Literature DB >> 22430200

A non-canonical UBA-UBL interaction forms the linear-ubiquitin-chain assembly complex.

Hirokazu Yagi1, Kazuhiro Ishimoto, Takeshi Hiromoto, Hiroaki Fujita, Tsunehiro Mizushima, Yoshinori Uekusa, Maho Yagi-Utsumi, Eiji Kurimoto, Masanori Noda, Susumu Uchiyama, Fuminori Tokunaga, Kazuhiro Iwai, Koichi Kato.   

Abstract

HOIL-1L and its binding partner HOIP are essential components of the E3-ligase complex that generates linear ubiquitin (Ub) chains, which are critical regulators of NF-κB activation. Using crystallographic and mutational approaches, we characterize the unexpected structural basis for the specific interaction between the Ub-like domain (UBL) of HOIL-1L and the Ub-associated domain (UBA) of HOIP. Our data indicate the functional significance of this non-canonical mode of UBA-UBL interaction in E3 complex formation and subsequent NF-κB activation. This study highlights the versatility and specificity of protein-protein interactions involving Ub/UBLs and their cognate proteins.

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Year:  2012        PMID: 22430200      PMCID: PMC3343348          DOI: 10.1038/embor.2012.24

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  22 in total

1.  Proteins containing the UBA domain are able to bind to multi-ubiquitin chains.

Authors:  C R Wilkinson; M Seeger; R Hartmann-Petersen; M Stone; M Wallace; C Semple; C Gordon
Journal:  Nat Cell Biol       Date:  2001-10       Impact factor: 28.824

2.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

3.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

4.  Methods used in the structure determination of bovine mitochondrial F1 ATPase.

Authors:  J P Abrahams; A G Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-01-01

Review 5.  Structural complexity in ubiquitin recognition.

Authors:  J Wade Harper; Brenda A Schulman
Journal:  Cell       Date:  2006-03-24       Impact factor: 41.582

6.  Determination of the secondary structures of proteins by circular dichroism and optical rotatory dispersion.

Authors:  Y H Chen; J T Yang; H M Martinez
Journal:  Biochemistry       Date:  1972-10-24       Impact factor: 3.162

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Backbone and side chain 1H, 13C, and 15N assignments of the ubiquitin-like domain of human HOIL-1L, an essential component of linear ubiquitin chain assembly complex.

Authors:  Yoshinori Uekusa; Syunsuke Mimura; Hiroaki Sasakawa; Eiji Kurimoto; Eri Sakata; Serve Olivier; Hirokazu Yagi; Fuminori Tokunaga; Kazuhiro Iwai; Koichi Kato
Journal:  Biomol NMR Assign       Date:  2011-11-30       Impact factor: 0.746

9.  SHARPIN forms a linear ubiquitin ligase complex regulating NF-κB activity and apoptosis.

Authors:  Fumiyo Ikeda; Yonathan Lissanu Deribe; Sigrid S Skånland; Benjamin Stieglitz; Caroline Grabbe; Mirita Franz-Wachtel; Sjoerd J L van Wijk; Panchali Goswami; Vanja Nagy; Janos Terzic; Fuminori Tokunaga; Ariadne Androulidaki; Tomoko Nakagawa; Manolis Pasparakis; Kazuhiro Iwai; John P Sundberg; Liliana Schaefer; Katrin Rittinger; Boris Macek; Ivan Dikic
Journal:  Nature       Date:  2011-03-31       Impact factor: 49.962

10.  Involvement of linear polyubiquitylation of NEMO in NF-kappaB activation.

Authors:  Fuminori Tokunaga; Shin-ichi Sakata; Yasushi Saeki; Yoshinori Satomi; Takayoshi Kirisako; Kiyoko Kamei; Tomoko Nakagawa; Michiko Kato; Shigeo Murata; Shoji Yamaoka; Masahiro Yamamoto; Shizuo Akira; Toshifumi Takao; Keiji Tanaka; Kazuhiro Iwai
Journal:  Nat Cell Biol       Date:  2009-01-11       Impact factor: 28.824

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  25 in total

1.  RING-between-RINGs--keeping the safety on loaded guns.

Authors:  Katja K Dove; Rachel E Klevit
Journal:  EMBO J       Date:  2012-09-07       Impact factor: 11.598

Review 2.  Linear ubiquitin chains: NF-κB signalling, cell death and beyond.

Authors:  Kazuhiro Iwai; Hiroaki Fujita; Yoshiteru Sasaki
Journal:  Nat Rev Mol Cell Biol       Date:  2014-07-09       Impact factor: 94.444

Review 3.  RING-Between-RING E3 Ligases: Emerging Themes amid the Variations.

Authors:  Katja K Dove; Rachel E Klevit
Journal:  J Mol Biol       Date:  2017-08-19       Impact factor: 5.469

4.  Molecular Determinants of Scaffold-induced Linear Ubiquitinylation of B Cell Lymphoma/Leukemia 10 (Bcl10) during T Cell Receptor and Oncogenic Caspase Recruitment Domain-containing Protein 11 (CARD11) Signaling.

Authors:  Yong-Kang Yang; Chao Yang; Waipan Chan; Zhaoquan Wang; Katelynn E Deibel; Joel L Pomerantz
Journal:  J Biol Chem       Date:  2016-10-24       Impact factor: 5.157

Review 5.  Protein ubiquitination in lymphoid malignancies.

Authors:  Yibin Yang; Louis M Staudt
Journal:  Immunol Rev       Date:  2015-01       Impact factor: 12.988

Review 6.  Ubiquitin-proteasome signaling in lung injury.

Authors:  Natalia D Magnani; Laura A Dada; Jacob I Sznajder
Journal:  Transl Res       Date:  2018-04-23       Impact factor: 7.012

7.  Essential role of the linear ubiquitin chain assembly complex in lymphoma revealed by rare germline polymorphisms.

Authors:  Yibin Yang; Roland Schmitz; Joseph Mitala; Amanda Whiting; Wenming Xiao; Michele Ceribelli; George W Wright; Hong Zhao; Yandan Yang; Weihong Xu; Andreas Rosenwald; German Ott; Randy D Gascoyne; Joseph M Connors; Lisa M Rimsza; Elias Campo; Elaine S Jaffe; Jan Delabie; Erlend B Smeland; Rita M Braziel; Raymond R Tubbs; James R Cook; Dennis D Weisenburger; Wing C Chan; Adrian Wiestner; Michael J Kruhlak; Kazuhiro Iwai; Federico Bernal; Louis M Staudt
Journal:  Cancer Discov       Date:  2014-02-03       Impact factor: 39.397

8.  Biophysical and biological evaluation of optimized stapled peptide inhibitors of the linear ubiquitin chain assembly complex (LUBAC).

Authors:  Francisco Aguilar-Alonso; Amanda L Whiting; Ye Joon Kim; Federico Bernal
Journal:  Bioorg Med Chem       Date:  2017-12-05       Impact factor: 3.641

Review 9.  Role of Linear Ubiquitination in Health and Disease.

Authors:  Patricia Brazee; Laura A Dada; Jacob I Sznajder
Journal:  Am J Respir Cell Mol Biol       Date:  2016-06       Impact factor: 6.914

10.  The parkin-coregulated gene product PACRG promotes TNF signaling by stabilizing LUBAC.

Authors:  Jens Meschede; Maria Šadić; Nikolas Furthmann; Tim Miedema; Dominik A Sehr; A Kathrin Müller-Rischart; Verian Bader; Lena A Berlemann; Anna Pilsl; Anita Schlierf; Katalin Barkovits; Barbara Kachholz; Katrin Rittinger; Fumiyo Ikeda; Katrin Marcus; Liliana Schaefer; Jörg Tatzelt; Konstanze F Winklhofer
Journal:  Sci Signal       Date:  2020-02-04       Impact factor: 8.192

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