Literature DB >> 28827147

RING-Between-RING E3 Ligases: Emerging Themes amid the Variations.

Katja K Dove1, Rachel E Klevit2.   

Abstract

Covalent, reversible, post-translational modification of cellular proteins with the small modifier, ubiquitin (Ub), regulates virtually every known cellular process in eukaryotes. The process is carried out by a trio of enzymes: a Ub-activating (E1) enzyme, a Ub-conjugating (E2) enzyme, and a Ub ligase (E3) enzyme. RING-in-Between-RING (RBR) E3s constitute one of three classes of E3 ligases and are defined by a RING-HECT-hybrid mechanism that utilizes a E2-binding RING domain and a second domain (called RING2) that contains an active site Cys required for the formation of an obligatory E3~Ub intermediate. Albeit a small class, RBR E3s in humans regulate diverse cellular process. This review focuses on non-Parkin members such as HOIP/HOIL-1L (the only E3s known to generate linear Ub chains), HHARI and TRIAD1, both of which have been recently demonstrated to work together with Cullin RING E3 ligases. We provide a brief historical background and highlight, summarize, and discuss recent developments in the young field of RBR E3s. Insights reviewed here include new understandings of the RBR Ub-transfer mechanism, specifically the role of RING1 and various Ub-binding sites, brief structural comparisons among members, and different modes of auto-inhibition and activation.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  RING-between-RING ubiquitin E3 ligases; protein ubiquitylation; ubiquitin

Mesh:

Substances:

Year:  2017        PMID: 28827147      PMCID: PMC5675740          DOI: 10.1016/j.jmb.2017.08.008

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  81 in total

1.  Mechanism underlying IκB kinase activation mediated by the linear ubiquitin chain assembly complex.

Authors:  Hiroaki Fujita; Simin Rahighi; Mariko Akita; Ryuichi Kato; Yoshiteru Sasaki; Soichi Wakatsuki; Kazuhiro Iwai
Journal:  Mol Cell Biol       Date:  2014-01-27       Impact factor: 4.272

2.  Human Homolog of Drosophila Ariadne (HHARI) is a marker of cellular proliferation associated with nuclear bodies.

Authors:  Fatima Elmehdawi; Gabrielle Wheway; Katarzyna Szymanska; Matthew Adams; Alec S High; Colin A Johnson; Philip A Robinson
Journal:  Exp Cell Res       Date:  2012-10-08       Impact factor: 3.905

3.  HoxA10 influences protein ubiquitination by activating transcription of ARIH2, the gene encoding Triad1.

Authors:  Hao Wang; Ling Bei; Chirag A Shah; Elizabeth Horvath; Elizabeth A Eklund
Journal:  J Biol Chem       Date:  2011-03-28       Impact factor: 5.157

4.  Ariadne-1: a vital Drosophila gene is required in development and defines a new conserved family of ring-finger proteins.

Authors:  M Aguilera; M Oliveros; M Martínez-Padrón; J A Barbas; A Ferrús
Journal:  Genetics       Date:  2000-07       Impact factor: 4.562

5.  Dorfin ubiquitylates mutant SOD1 and prevents mutant SOD1-mediated neurotoxicity.

Authors:  Jun-Ichi Niwa; Shinsuke Ishigaki; Nozomi Hishikawa; Masahiko Yamamoto; Manabu Doyu; Shigeo Murata; Keiji Tanaka; Naoyuki Taniguchi; Gen Sobue
Journal:  J Biol Chem       Date:  2002-07-26       Impact factor: 5.157

6.  Structure of the Parkin in-between-ring domain provides insights for E3-ligase dysfunction in autosomal recessive Parkinson's disease.

Authors:  Steven A Beasley; Ventzislava A Hristova; Gary S Shaw
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-27       Impact factor: 11.205

7.  Structural basis for the RING-catalyzed synthesis of K63-linked ubiquitin chains.

Authors:  Emma Branigan; Anna Plechanovová; Ellis G Jaffray; James H Naismith; Ronald T Hay
Journal:  Nat Struct Mol Biol       Date:  2015-07-06       Impact factor: 15.369

Review 8.  Linear ubiquitination signals in adaptive immune responses.

Authors:  Fumiyo Ikeda
Journal:  Immunol Rev       Date:  2015-07       Impact factor: 12.988

9.  Structural basis for ligase-specific conjugation of linear ubiquitin chains by HOIP.

Authors:  Benjamin Stieglitz; Rohini R Rana; Marios G Koliopoulos; Aylin C Morris-Davies; Veronique Schaeffer; Evangelos Christodoulou; Steven Howell; Nicholas R Brown; Ivan Dikic; Katrin Rittinger
Journal:  Nature       Date:  2013-10-20       Impact factor: 49.962

10.  Structure of HHARI, a RING-IBR-RING ubiquitin ligase: autoinhibition of an Ariadne-family E3 and insights into ligation mechanism.

Authors:  David M Duda; Jennifer L Olszewski; Jonathan P Schuermann; Igor Kurinov; Darcie J Miller; Amanda Nourse; Arno F Alpi; Brenda A Schulman
Journal:  Structure       Date:  2013-05-23       Impact factor: 5.006

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  48 in total

1.  UbMES and UbFluor: Novel probes for ring-between-ring (RBR) E3 ubiquitin ligase PARKIN.

Authors:  Sungjin Park; Peter K Foote; David T Krist; Sarah E Rice; Alexander V Statsyuk
Journal:  J Biol Chem       Date:  2017-07-14       Impact factor: 5.157

Review 2.  The role of ubiquitination in tumorigenesis and targeted drug discovery.

Authors:  Lu Deng; Tong Meng; Lei Chen; Wenyi Wei; Ping Wang
Journal:  Signal Transduct Target Ther       Date:  2020-02-29

3.  The HOIL-1L ligase modulates immune signalling and cell death via monoubiquitination of LUBAC.

Authors:  Yasuhiro Fuseya; Hiroaki Fujita; Minsoo Kim; Fumiaki Ohtake; Akira Nishide; Katsuhiro Sasaki; Yasushi Saeki; Keiji Tanaka; Ryosuke Takahashi; Kazuhiro Iwai
Journal:  Nat Cell Biol       Date:  2020-05-11       Impact factor: 28.824

4.  Protein engineering of a ubiquitin-variant inhibitor of APC/C identifies a cryptic K48 ubiquitin chain binding site.

Authors:  Edmond R Watson; Christy R R Grace; Wei Zhang; Darcie J Miller; Iain F Davidson; J Rajan Prabu; Shanshan Yu; Derek L Bolhuis; Elizaveta T Kulko; Ronnald Vollrath; David Haselbach; Holger Stark; Jan-Michael Peters; Nicholas G Brown; Sachdev S Sidhu; Brenda A Schulman
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-26       Impact factor: 11.205

5.  Gid10 as an alternative N-recognin of the Pro/N-degron pathway.

Authors:  Artem Melnykov; Shun-Jia Chen; Alexander Varshavsky
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-23       Impact factor: 11.205

Review 6.  Targeted protein degradation: elements of PROTAC design.

Authors:  Stacey-Lynn Paiva; Craig M Crews
Journal:  Curr Opin Chem Biol       Date:  2019-04-17       Impact factor: 8.822

Review 7.  Regulation of immune responses by E3 ubiquitin ligase Cbl-b.

Authors:  Rong Tang; Wallace Y Langdon; Jian Zhang
Journal:  Cell Immunol       Date:  2018-11-07       Impact factor: 4.868

8.  Biophysical and biological evaluation of optimized stapled peptide inhibitors of the linear ubiquitin chain assembly complex (LUBAC).

Authors:  Francisco Aguilar-Alonso; Amanda L Whiting; Ye Joon Kim; Federico Bernal
Journal:  Bioorg Med Chem       Date:  2017-12-05       Impact factor: 3.641

9.  Recognition of nonproline N-terminal residues by the Pro/N-degron pathway.

Authors:  Cheng Dong; Shun-Jia Chen; Artem Melnykov; Sara Weirich; Kelly Sun; Albert Jeltsch; Alexander Varshavsky; Jinrong Min
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-08       Impact factor: 11.205

Review 10.  [Targeting Cullin-RING E3 ligases for anti-cancer therapy: efforts on drug discovery].

Authors:  Qing Yu; Xiufang Xiong; Yi Sun
Journal:  Zhejiang Da Xue Xue Bao Yi Xue Ban       Date:  2020-05-25
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