Literature DB >> 22419084

Molecular analysis of enhancer RNAs and chromatin modifications in the region of their synthesis in Drosophila cells possessing genetic constructs.

D M Fedoseeva1, O V Kretova, N A Tchurikov.   

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Year:  2012        PMID: 22419084     DOI: 10.1134/S1607672912010012

Source DB:  PubMed          Journal:  Dokl Biochem Biophys        ISSN: 1607-6729            Impact factor:   0.788


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  14 in total

1.  Nucleosome positioning: an essential component of the enhancer regulatory code?

Authors:  Ahmet Ay; David N Arnosti
Journal:  Curr Biol       Date:  2010-05-11       Impact factor: 10.834

2.  Memories of lost enhancers.

Authors:  Ranjan Sen; Rudolf Grosschedl
Journal:  Genes Dev       Date:  2010-05-15       Impact factor: 11.361

3.  Molecular analysis of RNA induced by enhancer in Drosophila cells carrying reporter genetic constructs.

Authors:  D M Fedoseeva; O V Kretova; N A Tchurikov
Journal:  Dokl Biochem Biophys       Date:  2010-12-24       Impact factor: 0.788

4.  Functional analysis of LCR sequences from the cut locus of Drosophila melanogaster.

Authors:  N A Tchurikov; D V Sosin; O V Kretova; E D Moiseeva
Journal:  Dokl Biochem Biophys       Date:  2007 Jul-Aug       Impact factor: 0.788

5.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

6.  Identification of functional elements and regulatory circuits by Drosophila modENCODE.

Authors:  Sushmita Roy; Jason Ernst; Peter V Kharchenko; Pouya Kheradpour; Nicolas Negre; Matthew L Eaton; Jane M Landolin; Christopher A Bristow; Lijia Ma; Michael F Lin; Stefan Washietl; Bradley I Arshinoff; Ferhat Ay; Patrick E Meyer; Nicolas Robine; Nicole L Washington; Luisa Di Stefano; Eugene Berezikov; Christopher D Brown; Rogerio Candeias; Joseph W Carlson; Adrian Carr; Irwin Jungreis; Daniel Marbach; Rachel Sealfon; Michael Y Tolstorukov; Sebastian Will; Artyom A Alekseyenko; Carlo Artieri; Benjamin W Booth; Angela N Brooks; Qi Dai; Carrie A Davis; Michael O Duff; Xin Feng; Andrey A Gorchakov; Tingting Gu; Jorja G Henikoff; Philipp Kapranov; Renhua Li; Heather K MacAlpine; John Malone; Aki Minoda; Jared Nordman; Katsutomo Okamura; Marc Perry; Sara K Powell; Nicole C Riddle; Akiko Sakai; Anastasia Samsonova; Jeremy E Sandler; Yuri B Schwartz; Noa Sher; Rebecca Spokony; David Sturgill; Marijke van Baren; Kenneth H Wan; Li Yang; Charles Yu; Elise Feingold; Peter Good; Mark Guyer; Rebecca Lowdon; Kami Ahmad; Justen Andrews; Bonnie Berger; Steven E Brenner; Michael R Brent; Lucy Cherbas; Sarah C R Elgin; Thomas R Gingeras; Robert Grossman; Roger A Hoskins; Thomas C Kaufman; William Kent; Mitzi I Kuroda; Terry Orr-Weaver; Norbert Perrimon; Vincenzo Pirrotta; James W Posakony; Bing Ren; Steven Russell; Peter Cherbas; Brenton R Graveley; Suzanna Lewis; Gos Micklem; Brian Oliver; Peter J Park; Susan E Celniker; Steven Henikoff; Gary H Karpen; Eric C Lai; David M MacAlpine; Lincoln D Stein; Kevin P White; Manolis Kellis
Journal:  Science       Date:  2010-12-22       Impact factor: 47.728

7.  Most "dark matter" transcripts are associated with known genes.

Authors:  Harm van Bakel; Corey Nislow; Benjamin J Blencowe; Timothy R Hughes
Journal:  PLoS Biol       Date:  2010-05-18       Impact factor: 8.029

8.  Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.

Authors:  Peter V Kharchenko; Artyom A Alekseyenko; Yuri B Schwartz; Aki Minoda; Nicole C Riddle; Jason Ernst; Peter J Sabo; Erica Larschan; Andrey A Gorchakov; Tingting Gu; Daniela Linder-Basso; Annette Plachetka; Gregory Shanower; Michael Y Tolstorukov; Lovelace J Luquette; Ruibin Xi; Youngsook L Jung; Richard W Park; Eric P Bishop; Theresa K Canfield; Richard Sandstrom; Robert E Thurman; David M MacAlpine; John A Stamatoyannopoulos; Manolis Kellis; Sarah C R Elgin; Mitzi I Kuroda; Vincenzo Pirrotta; Gary H Karpen; Peter J Park
Journal:  Nature       Date:  2010-12-22       Impact factor: 49.962

9.  Evidence for RNA synthesis in the intergenic region between enhancer and promoter and its inhibition by insulators in Drosophila melanogaster.

Authors:  Nickolai A Tchurikov; Olga V Kretova; Evgenia D Moiseeva; Dmitri V Sosin
Journal:  Nucleic Acids Res       Date:  2008-11-20       Impact factor: 16.971

10.  A facilitated tracking and transcription mechanism of long-range enhancer function.

Authors:  Xingguo Zhu; Jianhua Ling; Ling Zhang; Wenhu Pi; Min Wu; Dorothy Tuan
Journal:  Nucleic Acids Res       Date:  2007-08-17       Impact factor: 16.971

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  1 in total

1.  Analysis of insulator proteins binding in reporter genetic constructs transfected into Drosophila S2 cells.

Authors:  D M Fedoseeva; N A Tchurikov
Journal:  Dokl Biochem Biophys       Date:  2013-08-23       Impact factor: 0.788

  1 in total

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