Literature DB >> 22418467

Position and orientation estimation of fixed dipole emitters using an effective Hermite point spread function model.

Sjoerd Stallinga1, Bernd Rieger.   

Abstract

We introduce a method for determining the position and orientation of fixed dipole emitters based on a combination of polarimetry and spot shape detection. A key element is an effective Point Spread Function model based on Hermite functions. The model offers a good description of the shape variations with dipole orientation and polarization detection channel, and provides computational advantages over the exact vectorial description of dipole image formation. The realized localization uncertainty is comparable to the free dipole case in which spots are rotationally symmetric and can be well modeled with a Gaussian. This result holds for all dipole orientations, for all practical signal levels, and for defocus values within the depth of focus, implying that the massive localization bias for defocused emitters with tilted dipole axis found with Gaussian spot fitting is eliminated.

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Year:  2012        PMID: 22418467     DOI: 10.1364/OE.20.005896

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  20 in total

1.  Determining the rotational mobility of a single molecule from a single image: a numerical study.

Authors:  Adam S Backer; W E Moerner
Journal:  Opt Express       Date:  2015-02-23       Impact factor: 3.894

2.  Fundamental precision bounds for three-dimensional optical localization microscopy using self-interference digital holography.

Authors:  Abhijit Marar; Peter Kner
Journal:  Biomed Opt Express       Date:  2020-12-03       Impact factor: 3.732

3.  Fisher information theory for parameter estimation in single molecule microscopy: tutorial.

Authors:  Jerry Chao; E Sally Ward; Raimund J Ober
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2016-07-01       Impact factor: 2.129

Review 4.  Precisely and accurately localizing single emitters in fluorescence microscopy.

Authors:  Hendrik Deschout; Francesca Cella Zanacchi; Michael Mlodzianoski; Alberto Diaspro; Joerg Bewersdorf; Samuel T Hess; Kevin Braeckmans
Journal:  Nat Methods       Date:  2014-03       Impact factor: 28.547

Review 5.  Fluorophore localization algorithms for super-resolution microscopy.

Authors:  Alex Small; Shane Stahlheber
Journal:  Nat Methods       Date:  2014-03       Impact factor: 28.547

Review 6.  Fluorescence nanoscopy. Methods and applications.

Authors:  Jose Requejo-Isidro
Journal:  J Chem Biol       Date:  2013-06-04

7.  TestSTORM: Simulator for optimizing sample labeling and image acquisition in localization based super-resolution microscopy.

Authors:  József Sinkó; Róbert Kákonyi; Eric Rees; Daniel Metcalf; Alex E Knight; Clemens F Kaminski; Gábor Szabó; Miklós Erdélyi
Journal:  Biomed Opt Express       Date:  2014-02-18       Impact factor: 3.732

8.  SimpleSTORM: a fast, self-calibrating reconstruction algorithm for localization microscopy.

Authors:  Ullrich Köthe; Frank Herrmannsdörfer; Ilia Kats; Fred A Hamprecht
Journal:  Histochem Cell Biol       Date:  2014-04-11       Impact factor: 4.304

Review 9.  The role of molecular dipole orientation in single-molecule fluorescence microscopy and implications for super-resolution imaging.

Authors:  Mikael P Backlund; Matthew D Lew; Adam S Backer; Steffen J Sahl; W E Moerner
Journal:  Chemphyschem       Date:  2013-12-30       Impact factor: 3.102

10.  The double-helix point spread function enables precise and accurate measurement of 3D single-molecule localization and orientation.

Authors:  Mikael P Backlund; Matthew D Lew; Adam S Backer; Steffen J Sahl; Ginni Grover; Anurag Agrawal; Rafael Piestun; W E Moerner
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2013-02-22
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