Literature DB >> 22417533

MacA is a second cytochrome c peroxidase of Geobacter sulfurreducens.

Julian Seidel1, Maren Hoffmann, Katie E Ellis, Antonia Seidel, Thomas Spatzal, Stefan Gerhardt, Sean J Elliott, Oliver Einsle.   

Abstract

The metal-reducing δ-proteobacterium Geobacter sulfurreducens produces a large number of c-type cytochromes, many of which have been implicated in the transfer of electrons to insoluble metal oxides. Among these, the dihemic MacA was assigned a central role. Here we have produced G. sulfurreducens MacA by recombinant expression in Escherichia coli and have solved its three-dimensional structure in three different oxidation states. Sequence comparisons group MacA into the family of diheme cytochrome c peroxidases, and the protein indeed showed hydrogen peroxide reductase activity with ABTS(-2) as an electron donor. The observed K(M) was 38.5 ± 3.7 μM H(2)O(2) and v(max) was 0.78 ± 0.03 μmol of H(2)O(2)·min(-1)·mg(-1), resulting in a turnover number k(cat) = 0.46 · s(-1). In contrast, no Fe(III) reductase activity was observed. MacA was found to display electrochemical properties similar to other bacterial diheme peroxidases, in addition to the ability to electrochemically mediate electron transfer to the soluble cytochrome PpcA. Differences in activity between CcpA and MacA can be rationalized with structural variations in one of the three loop regions, loop 2, that undergoes conformational changes during reductive activation of the enzyme. This loop is adjacent to the active site heme and forms an open loop structure rather than a more rigid helix as in CcpA. For the activation of the protein, the loop has to displace the distal ligand to the active site heme, H93, in loop 1. A H93G variant showed an unexpected formation of a helix in loop 2 and disorder in loop 1, while a M297H variant that altered the properties of the electron transfer heme abolished reductive activation.

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Year:  2012        PMID: 22417533      PMCID: PMC3724352          DOI: 10.1021/bi300249u

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  38 in total

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Authors:  B A Methé; K E Nelson; J A Eisen; I T Paulsen; W Nelson; J F Heidelberg; D Wu; M Wu; N Ward; M J Beanan; R J Dodson; R Madupu; L M Brinkac; S C Daugherty; R T DeBoy; A S Durkin; M Gwinn; J F Kolonay; S A Sullivan; D H Haft; J Selengut; T M Davidsen; N Zafar; O White; B Tran; C Romero; H A Forberger; J Weidman; H Khouri; T V Feldblyum; T R Utterback; S E Van Aken; D R Lovley; C M Fraser
Journal:  Science       Date:  2003-12-12       Impact factor: 47.728

2.  MacA, a diheme c-type cytochrome involved in Fe(III) reduction by Geobacter sulfurreducens.

Authors:  Jessica E Butler; Franz Kaufmann; Maddalena V Coppi; Cinthia Núñez; Derek R Lovley
Journal:  J Bacteriol       Date:  2004-06       Impact factor: 3.490

3.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
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Authors: 
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5.  Geobacter sulfurreducens can grow with oxygen as a terminal electron acceptor.

Authors:  W C Lin; M V Coppi; D R Lovley
Journal:  Appl Environ Microbiol       Date:  2004-04       Impact factor: 4.792

6.  Crystal structure of Nitrosomonas europaea cytochrome c peroxidase and the structural basis for ligand switching in bacterial di-heme peroxidases.

Authors:  H Shimizu; D J Schuller; W N Lanzilotta; M Sundaramoorthy; D M Arciero; A B Hooper; T L Poulos
Journal:  Biochemistry       Date:  2001-11-13       Impact factor: 3.162

7.  The steady-state kinetics of peroxidase with 2,2'-azino-di-(3-ethyl-benzthiazoline-6-sulphonic acid) as chromogen.

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8.  OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens.

Authors:  Ching Leang; M V Coppi; D R Lovley
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

9.  Structural basis for the mechanism of Ca(2+) activation of the di-heme cytochrome c peroxidase from Pseudomonas nautica 617.

Authors:  João M Dias; Teresa Alves; Cecília Bonifácio; Alice S Pereira; José Trincão; Dominique Bourgeois; Isabel Moura; Maria João Romão
Journal:  Structure       Date:  2004-06       Impact factor: 5.006

10.  Paracoccus pantotrophus pseudoazurin is an electron donor to cytochrome c peroxidase.

Authors:  Sofia R Pauleta; Françoise Guerlesquin; Celia F Goodhew; Bart Devreese; Jozef Van Beeumen; Alice S Pereira; Isabel Moura; Graham W Pettigrew
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  11 in total

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2.  AlphaFold2 fails to predict protein fold switching.

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Journal:  Protein Sci       Date:  2022-06       Impact factor: 6.993

Review 3.  Multi-heme proteins: nature's electronic multi-purpose tool.

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Journal:  Biochim Biophys Acta       Date:  2013-04-02

4.  Structure of the processive rubber oxygenase RoxA from Xanthomonas sp.

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Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-06       Impact factor: 11.205

5.  Resonance Raman, Electron Paramagnetic Resonance, and Magnetic Circular Dichroism Spectroscopic Investigation of Diheme Cytochrome c Peroxidases from Nitrosomonas europaea and Shewanella oneidensis.

Authors:  Matthew W Wolf; Kimberly Rizzolo; Sean J Elliott; Nicolai Lehnert
Journal:  Biochemistry       Date:  2018-11-01       Impact factor: 3.162

6.  Impact of quaternary structure upon bacterial cytochrome c peroxidases: does homodimerization matter?

Authors:  Katie E Ellis; Katherine E Frato; Sean J Elliott
Journal:  Biochemistry       Date:  2012-12-05       Impact factor: 3.162

7.  Oxidation triggers extensive conjugation and unusual stabilization of two di-heme dication diradical intermediates: role of bridging group for electronic communication.

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Journal:  Chem Sci       Date:  2015-10-26       Impact factor: 9.825

8.  Nutrient and acetate amendment leads to acetoclastic methane production and microbial community change in a non-producing Australian coal well.

Authors:  Michiel H In 't Zandt; Sabrina Beckmann; Ruud Rijkers; Mike S M Jetten; Mike Manefield; Cornelia U Welte
Journal:  Microb Biotechnol       Date:  2017-09-19       Impact factor: 5.813

9.  Competitive advantage of oxygen-tolerant bioanodes of Geobacter sulfurreducens in bioelectrochemical systems.

Authors:  Allison M Speers; Gemma Reguera
Journal:  Biofilm       Date:  2021-06-14

10.  Abundance of the multiheme c-type cytochrome OmcB increases in outer biofilm layers of electrode-grown Geobacter sulfurreducens.

Authors:  Camille S Stephen; Edward V LaBelle; Susan L Brantley; Daniel R Bond
Journal:  PLoS One       Date:  2014-08-04       Impact factor: 3.240

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