| Literature DB >> 22417007 |
Cherry Yin-Yi Chang1, Yi Chen, Wu-Chou Lin, Chih-Mei Chen, Chih-Ping Chen, Shan-Chih Lee, Jim Jinn-Chyuan Sheu, Fuu-Jen Tsai.
Abstract
BACKGROUND: Mucins are highly glycosylated proteins protecting and lubricating epithelial surface of respiratory, gastrointestinal and reproductive tracts. Members of the mucin protein family have been suggested to play an important role in development of endometriosis and infertility. This study investigates genetic association of mucin2 (MUC2) with the risk of endometriosis and endometriosis-related infertility.Entities:
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Year: 2012 PMID: 22417007 PMCID: PMC3338096 DOI: 10.1186/1471-2350-13-15
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Figure 1Pairwise linkage disequilibrium (LD) between SNPs of the MUC2 gene. LD maps were shown for controls (A) and patients (B). Values shown are for D'.
Association between SNPs in MUC2 gene and endometriosis in Taiwanese patients and controls
| SNP | Genotype/allele | No. (%) of patients | No. (%) of controls | OR | 95% CI | |||
|---|---|---|---|---|---|---|---|---|
| rs2856111 | CC | 35 | (18.5) | 35 | (18.2) | 0.29 | 0.79 | 0.46-1.36 |
| CT | 96 | (50.8) | 111 | (57.8) | 0.69 | 0.43-1.10 | ||
| TT | 58 | (30.7) | 46 | (24.0) | 1.00 | |||
| C | 166 | (43.9) | 181 | (47.1) | 0.37 | 0.88 | 0.66-1.17 | |
| T | 212 | (56.1) | 203 | (52.9) | 1.00 | |||
| rs11245936 | AA | 1 | (0.5) | 3 | (1.6) | 0.34 | 0.32 | 0.03-3.10 |
| AG | 21 | (11.0) | 28 | (14.5) | 0.72 | 0.39-1.32 | ||
| GG | 169 | (88.5) | 162 | (83.9) | 1.00 | |||
| A | 23 | (6.0) | 34 | (8.8) | 0.14 | 0.66 | 0.38-1.22 | |
| G | 359 | (94.0) | 352 | (91.2) | 1.00 | |||
| rs10794288 | CC | 34 | (17.4) | 45 | (23.0) | 0.092 | 0.56 | 0.33-0.96 |
| CT | 87 | (44.6) | 96 | (49.0) | 0.67 | 0.43-1.06 | ||
| TT | 74 | (37.9) | 55 | (28.0) | 1.00 | |||
| C | 155 | (39.7) | 186 | (47.4) | 0.030* | 0.73 | 0.55-0.97 | |
| T | 235 | (60.3) | 206 | (52.6) | 1.00 | |||
| rs10902088 | TT | 27 | (14.0) | 43 | (22.3) | 0.045* | 0.47 | 0.27-0.83 |
| CT | 93 | (48.2) | 95 | (49.2) | 0.74 | 0.47-1.16 | ||
| CC | 73 | (37.8) | 55 | (28.5) | 1.00 | |||
| T | 147 | (38.1) | 181 | (47.4) | 0.013* | 0.70 | 0.52-0.93 | |
| C | 239 | (61.9) | 205 | (52.6) | 1.00 | |||
| rs7103978 | GG | 2 | (1.0) | 1 | (0.5) | 0.053 | 1.84 | 0.16-21.58 |
| AG | 19 | (9.8) | 37 | (18.9) | 0.47 | 0.26-0.85 | ||
| AA | 172 | (89.1) | 158 | (80.6) | 1.00 | |||
| G | 23 | (6.0) | 39 | (9.9) | 0.040* | 0.57 | 0.34-0.98 | |
| A | 363 | (94.0) | 353 | (90.1) | 1.00 | |||
| rs11245954 | GG | 0 | (0.0) | 0 | (0.0) | NA | NA | NA |
| AG | 21 | (10.8) | 26 | (13.5) | 0.78 | 0.42-1.43 | ||
| AA | 173 | (89.2) | 166 | (86.5) | 1.00 | |||
| G | 21 | (5.4) | 26 | (6.8) | 0.43 | 0.79 | 0.44-1.43 | |
| A | 367 | (94.6) | 358 | (93.2) | 1.00 | |||
*Indicates statistical significance
aP-values were calculated using χ2 test without corrections for multiple test
Association between allele distributions of SNPs in MUC2 and endometriosis-related infertility
| SNP | Infertile | Non-Infertile | OR | 95% CI | |
|---|---|---|---|---|---|
| rs2856111 | 48.1 | 41.3 | 0.36 | 1.32 | 0.73-2.38 |
| rs11245936 | 3.8 | 5.4 | 0.64 | 0.70 | 0.16-3.16 |
| rs10794288 | 24.1 | 41.7 | 0.015* | 0.44 | 0.23-0.87 |
| rs10902088 | 26.0 | 43.1 | 0.024* | 0.46 | 0.24-0.91 |
| rs7103978 | 5.8 | 5.8 | 0.99 | 0.99 | 0.28-3.54 |
| rs11245954 | 3.8 | 4.7 | 0.79 | 0.82 | 0.18-3.72 |
*Indicates statistical significance
MAF minor allele frequency
aP-values were calculated using χ2 test
Association between MUC2 haplotypes and endometriosis or endometriosis-related infertility
| SNP marker | Haplotype | Endometriosis | Endometriosis-related infertility | ||||
|---|---|---|---|---|---|---|---|
| Case (%) | Control (%) | Infertility (%) | Non-infertility (%) | ||||
| rs10794288, rs10902088 | T-C | 58.6 | 49.6 | 0.012* | 74.9 | 57.2 | 0.0091* |
| C-T | 35.8 | 43.2 | 0.035* | 23.4 | 38.3 | 0.025* | |
| C-C | 3.4 | 3.7 | 0.83 | 0.1 | 2.6 | 0.20 | |
| T-T | 2.1 | 3.5 | 0.27 | 1.6 | 1.9 | 0.89 | |
| rs10794288, rs10902088, rs7103978 | T-C-A | 57.8 | 48.1 | 0.0063* | 74.8 | 56.3 | 0.0066* |
| C-T-A | 32.0 | 35.9 | 0.25 | 22.0 | 34.1 | 0.06 | |
| C-T-G | 3.8 | 7.2 | 0.036* | 1.4 | 4.2 | 0.29 | |
| C-C-A | 3.4 | 3.7 | 0.81 | 0 | 2.6 | 0.20 | |
| T-T-G | 1.5 | 2.0 | 0.61 | 1.6 | 1.1 | 0.76 | |
*Indicates statistical significance. aP-values were calculated using χ2 test