| Literature DB >> 21349170 |
Cherry Yin-Yi Chang1, Hui-Wen Chang, Chih-Mei Chen, Chia-Ying Lin, Chih-Ping Chen, Chih-Ho Lai, Wei-Yong Lin, Hsing-Ping Liu, Jim Jinn-Chyuan Sheu, Fuu-Jen Tsai.
Abstract
BACKGROUND: Mucin 4 (MUC4) plays an important role in protecting and lubricating the epithelial surface of reproductive tracts, but its role in the pathogenesis of endometriosis is largely unknown.Entities:
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Year: 2011 PMID: 21349170 PMCID: PMC3052195 DOI: 10.1186/1741-7015-9-19
Source DB: PubMed Journal: BMC Med ISSN: 1741-7015 Impact factor: 8.775
Figure 1Allelic discrimination plots of the six tested single-nucleotide polymorphisms (SNPs) in the mucin 4 (. The DNA samples from patients and controls were genotyped by using the TaqMan SNP Genotyping Assay System. The major (also the wild-type) alleles were detected by 6-carboxyfluorescein (FAM)-labeled probes (blue), and the minor alleles were detected by 2'-chloro-7'-phenyl-1,4-dichloro-6-carboxyfluorescein (VIC)-labeled probes. The genotyping results of the six SNPs in the MUC4 gene are presented as allelic discrimination plots. Of note, the intensity of FAM signals tended to be similar among samples in our assays, thus the dots for a wild-type genotype overlapped each other. "X" indicates the participant who failed to be genotyped.
Genotype and allele distributions of the six SNPs in the MUC4 gene in Taiwanese endometriosis patients and controlsa
| SNPs | Genotype/allele | No. (%)of patients | HWE | No. (%)of controls | HWE | OR (95% CI) | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| rs882605 | TT | 9 | (7.0) | 0.62 | 10 | (7.2) | 0.07 | 0.04 | 1.13 | (0.43 to 3.00) |
| TG | 54 | (42.2) | 40 | (28.8) | 1.97 | (1.17 to 3.32)b | ||||
| GG | 65 | (50.8) | 89 | (64.0) | 1.00 | Reference | ||||
| T | 72 | (28.1) | 60 | (21.6) | 0.08 | 1.42 | (0.96 to 2.11) | |||
| G | 184 | (71.9) | 218 | (78.4) | 1.00 | Reference | ||||
| rs1104760 | CC | 7 | (5.4) | 0.94 | 9 | (6.3) | 0.09 | 0.30 | 0.96 | (0.33 to 2.82) |
| CT | 47 | (36.2) | 39 | (27.5) | 1.49 | (0.89 to 2.51) | ||||
| TT | 76 | (58.5) | 94 | (66.2) | 1.00 | Reference | ||||
| C | 61 | (23.5) | 57 | (20.1) | 0.34 | 1.22 | (0.81 to 1.84) | |||
| T | 199 | (76.5) | 227 | (79.9) | 1.00 | Reference | ||||
| rs2246901 | GG | 8 | (6.0) | 0.96 | 10 | (7.1) | 0.15 | 0.56 | 0.91 | (0.33 to 2.53) |
| TG | 49 | (36.6) | 43 | (30.5) | 1.30 | (0.78 to 2.17) | ||||
| TT | 77 | (57.5) | 88 | (62.4) | 1.00 | reference | ||||
| G | 65 | (24.3) | 63 | (22.3) | 0.60 | 1.11 | (0.75 to 1.65) | |||
| T | 203 | (75.7) | 219 | (77.7) | 1.00 | Reference | ||||
| rs2258447 | AA | 9 | (6.4) | 0.37 | 10 | (7.0) | 0.07 | 0.70 | 1.02 | (0.38 to 2.77) |
| AG | 44 | (32.1) | 40 | (28.2) | 1.25 | (0.74 to 2.11) | ||||
| GG | 81 | (61.4) | 92 | (64.8) | 1.00 | Reference | ||||
| A | 62 | (22.5) | 60 | (21.1) | 0.57 | 1.12 | (0.75 to 1.68) | |||
| G | 206 | (77.5) | 224 | (78.9) | 1.00 | Reference | ||||
| rs2291652 | CC | 11 | (8.7) | 0.92 | 11 | (8.4) | 0.26 | 0.52 | 1.17 | (0.46 to 2.96) |
| CT | 52 | (40.9) | 45 | (34.4) | 1.35 | (0.81 to 2.28) | ||||
| TT | 64 | (50.4) | 75 | (57.3) | 1.00 | Reference | ||||
| C | 74 | (29.1) | 67 | (25.6) | 0.36 | 1.20 | (0.81 to 1.76) | |||
| T | 180 | (70.9) | 195 | (74.4) | 1.00 | Reference | ||||
| rs2688513 | CC | 8 | (6.0) | 0.62 | 10 | (7.0) | 0.09 | 0.66 | 0.91 | (0.33 to 2.53) |
| TC | 45 | (33.8) | 41 | (28.9) | 1.25 | (0.74 to 2.10) | ||||
| TT | 80 | (60.2) | 91 | (64.1) | 1.00 | Reference | ||||
| C | 61 | (22.9) | 61 | (21.5) | 0.68 | 1.09 | (0.73 to 1.63) | |||
| T | 205 | (77.1) | 223 | (78.5) | 1.00 | Reference | ||||
aMUC4, mucin 4 gene; SNP, single-nucleotide polymorphism; OR, odds ratio; 95% CI, 95% confidence interval; HWE, P values of deviation from the Hardy-Weinberg equilibrium constant. Allelic frequencies were determined by χ2 test using 2 × 2 contingency tables. Genotype frequencies were determined by χ2 test using 2 × 3 contingency tables. bP < 0.05 was considered statistically significant.
Haplotype frequencies of MUC4 polymorphisms in endometriosis patients and controlsa
| rs1104760/rs882605 | Patients, % | Controls, % | |
|---|---|---|---|
| TG | 73.2 | 78.8 | 0.1202 |
| CT | 22.9 | 20.1 | 0.4134 |
| TT | 3.9 | 1.1 | 0.0353b |
aMUC4, mucin 4 gene. The reported haplotype percents are estimated percents based on allele frequencies and the linkage disequilibrium. The P values are based on a comparison of a given haplotype with all other haplotypes combined. bP < 0.05 was considered statistically significant.
Genotype and allele distributions of SNPs in the MUC4 gene in endometriosis patients at different clinical stagesa
| SNP | Genotype/allele | |||||
|---|---|---|---|---|---|---|
| rs882605 | TT | 0 | (0.0) | 7 | (8.0) | 0.25 |
| TG | 2 | (25.0) | 41 | (46.6) | ||
| GG | 6 | (75.0) | 40 | (45.5) | ||
| TT+TG | 2 | (25.0) | 48 | (54.5) | 0.11 | |
| GG | 6 | (75.0) | 40 | (45.5) | ||
| T | 2 | (12.5) | 55 | (31.3) | 0.12 | |
| G | 14 | (87.5) | 121 | (68.8) | ||
| rs1104760 | CC | 0 | (0.0) | 5 | (5.8) | 0.05 |
| CT | 0 | (0.0) | 36 | (41.9) | ||
| TT | 7 | (100.0) | 45 | (52.3) | ||
| CC+CT | 0 | (0.0) | 41 | (47.7) | 0.0d | |
| TT | 7 | (100.0) | 45 | (52.3) | ||
| C | 0 | (0.0) | 46 | (26.7) | 0.03d | |
| T | 14 | (100.0) | 126 | (73.3) | ||
| rs2688513 | CC | 0 | (0.0) | 6 | (6.9) | 0.04d |
| CT | 0 | (0.0) | 34 | (39.1) | ||
| TT | 8 | (100.0) | 47 | (54.0) | ||
| CC+CT | 0 | (0.0) | 40 | (46.0) | 0.01d | |
| TT | 8 | (100.0) | 47 | (54.0) | ||
| C | 0 | (0.0) | 46 | (26.4) | 0.02d | |
| T | 16 | (100.0) | 128 | (73.6) | ||
| rs2246901 | GG | 0 | (0.0) | 6 | (6.8) | 0.03d |
| TG | 0 | (0.0) | 36 | (40.9) | ||
| TT | 8 | (100.0) | 46 | (52.3) | ||
| GG+TG | 0 | (0.0) | 42 | (47.7) | 0.01d | |
| TT | 8 | (100.0) | 46 | (52.3) | ||
| G | 0 | (0.0) | 48 | (27.3) | 0.02d | |
| T | 16 | (100.0) | 128 | (72.7) | ||
| rs2258447 | AA | 0 | (0.0) | 7 | (7.9) | 0.08 |
| AG | 0 | (0.0) | 32 | (36.0) | ||
| GG | 7 | (100.0) | 50 | (56.2) | ||
| AA+AG | 0 | (0.0) | 39 | (43.8) | 0.02d | |
| GG | 7 | (100.0) | 50 | (56.2) | ||
| A | 0 | (0.0) | 46 | (25.8) | 0.03d | |
| G | 14 | (100.0) | 132 | (74.2) | ||
| rs2291652 | CC | 0 | (0.0) | 7 | (8.3) | 0.61 |
| CT | 2 | (33.3) | 36 | (42.9) | ||
| TT | 4 | (66.7) | 41 | (48.8) | ||
| CC+CT | 2 | (33.3) | 43 | (51.2) | 0.40 | |
| TT | 4 | (66.7) | 41 | (48.8) | ||
| C | 2 | (16.7) | 50 | (29.8) | 0.33 | |
| T | 10 | (83.3) | 118 | (70.2) | ||
aSNP, single-nucleotide polymorphism; MUC4, mucin 4 gene. Allelic frequencies were determined by Fisher's exact test using 2 × 2 contingency tables. Genotype frequencies were determined by Fisher's exact test using 2 × 3 contingency tables. bMild stage, patients at clinical stage1 or stage 2; cSevere stage, patients at clinical stage 3 or stage 4; dP < 0.05 was considered statistically significant.
Genotype and allele distributions of the six SNPs in the MUC4 gene in endometriosis patients with different reproductive abilitya
| SNP | Genotype/allele | No. (%) infertility | No. (%) noninfertility | OR (95% CI) | ||||
|---|---|---|---|---|---|---|---|---|
| rs882605 | TT | 0 | (0.0) | 8 | (8.7) | 0.07 | - | - |
| TG | 5 | (26.3) | 42 | (45.7) | 0.36 | (0.12 to 1.08) | ||
| GG | 14 | (73.7) | 42 | (45.7) | 1.00 | Reference | ||
| T | 5 | (13.2) | 58 | (31.5) | 0.03b | 0.33 | (0.12 to 0.89) | |
| G | 33 | (86.8) | 126 | (68.5) | 1.00 | Reference | ||
| rs1104760 | CC | 0 | (0.0) | 6 | (6.3) | 0.41 | - | - |
| CT | 4 | (25.0) | 37 | (38.5) | 0.48 | (0.14 to 1.60) | ||
| TT | 12 | (75.0) | 53 | (55.2) | 1.00 | Reference | ||
| C | 4 | (12.5) | 49 | (25.5) | 0.12 | 0.42 | (0.14 to 1.25) | |
| T | 28 | (87.5) | 143 | (74.5) | 1.00 | Reference | ||
| rs2688513 | CC | 0 | (0.0) | 7 | (7.4) | 0.32 | - | - |
| TC | 5 | (25.0) | 34 | (36.2) | 0.52 | (0.17 to 1.56) | ||
| TT | 15 | (75.0) | 53 | (56.4) | 1.00 | Reference | ||
| C | 5 | (12.5) | 48 | (25.5) | 0.09 | 0.42 | (0.15 to 1.12) | |
| T | 35 | (87.5) | 140 | (74.5) | 1.00 | Reference | ||
| rs2246901 | GG | 0 | (0.0) | 7 | (7.4) | 0.25 | - | - |
| TG | 5 | (25.0) | 37 | (38.9) | 0.46 | (0.15 to 1.38) | ||
| TT | 15 | (75.0) | 51 | (53.7) | 1.00 | Reference | ||
| G | 5 | (12.5) | 51 | (26.8) | 0.06 | 0.39 | (0.14 to 1.05) | |
| T | 35 | (87.5) | 139 | (73.2) | 1.00 | Reference | ||
| rs2258447 | AA | 1 | (5.0) | 7 | (7.3) | 0.41 | 0.53 | (0.05 to 5.53) |
| AG | 4 | (20.0) | 33 | (34.4) | 0.45 | (0.14 to 1.48) | ||
| GG | 15 | (75.0) | 56 | (58.3) | 1.00 | Reference | ||
| A | 6 | (15.0) | 47 | (24.5) | 0.22 | 0.54 | (0.22 to 1.38) | |
| G | 34 | (85.0) | 145 | (75.5) | 1.00 | Reference | ||
| rs2291652 | CC | 0 | (0.0) | 7 | (7.8) | 0.29 | - | - |
| CT | 7 | (35.0) | 40 | (44.4) | 0.58 | (0.21 to 1.60) | ||
| TT | 13 | (65.0) | 43 | (47.8) | 1.00 | Reference | ||
| C | 7 | (17.5) | 54 | (30.0) | 0.12 | 0.49 | (0.21 to 1.19) | |
| T | 33 | (82.5) | 126 | (70.0) | 1.00 | Reference | ||
aSNP, single-nucleotide polymorphism; MUC4, mucin 4 gene; OR, odds ratio; 95% CI, 95% confidence interval. Allelic frequencies were determined by Fisher's exact test using 2 × 2 contingency tables. Genotype frequencies were determined by Fisher's exact test using 2 × 3 contingency tables. bP < 0.05 was considered statistically significant.
Haplotype frequencies of MUC4 polymorphisms in endometriosis patients with infertilitya
| rs882605/rs2246901/rs2688513 | Infertility, % | Noninfertility, % | |
|---|---|---|---|
| GTT | 87.2 | 67.4 | 0.012b |
| TGC | 12.5 | 24.4 | 0.099 |
| TTT | 0.2 | 4.4 | 0.206 |
| GGT | 0.0 | 2.2 | 0.344 |
aMUC4, mucin 4 gene. The reported haplotype percentages are estimated percentages based on allele frequencies and the linkage disequilibrium. The P values are based on a comparison of a given haplotype with all other haplotypes combined. bP < 0.05 was considered statistically significant.
Figure 2Functional domains in the MUC4 protein sequence and the predicted secondary structures. Six functional domains and/or signatures (boxes) were annotated by aligning MUC4 protein sequence in PROSITE protein domain database [28]. The boundaries of each signature are listed. Among six SNPs tested in this study (stars), rs882605 and rs2688513 (black) were found in two different long-loop regions, 300-319 and 4,134-4,158, respectively (bold letters refer to amino acid substitution sites). The SNP rs2246901 (gray) was found in a type D von Willebrand factor (VWFD) domain. The MUC4 reference sequence can be located at National Center for Biotechnology Information databank NP_060876.4.