Literature DB >> 22220100

Gallic acid pyridine monosolvate.

Fu-Yue Dong1, Jie Wu, Hai-Yan Tian, Qing-Mei Ye, Ren-Wang Jiang.   

Abstract

IN THE TITLE COMPOUND (SYSTENATIC NAME: 3,4,5-trihy-droxy-benzoic acid pyridine monosolvate), C(5)H(5)N·C(7)H(6)O(5), the gallic acid mol-ecule is essentially planar (r.m.s deviation = 0.0766 Å for non-H atoms) and is linked to the pyridine mol-ecule by an O-H⋯N hydrogen bond. An intra-molecular O-H⋯O hydrogen bond occurs in the gallic acid mol-ecule. The gallic acid and pyridine mean planes make a dihedral angle 12.6 (3)°. Inter-molecular O-H⋯O and O-H⋯N hydrogen bonding involving the hy-droxy and carboxyl groups and the pyridine mol-ecule, and π-π inter-actions between inversion-related pyridines [centroid-centroid distance = 3.459 (6) Å] and between pyridine and benzene rings [centroid-centroid distance = 3.548 (6) Å], lead to a three-dimensional network in the crystal.

Entities:  

Year:  2011        PMID: 22220100      PMCID: PMC3247482          DOI: 10.1107/S1600536811043868

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of gallic acid, see: Souza et al. (2011 ▶); Ozcelik et al. (2011 ▶); Liu et al. (2011 ▶). For previous reports on the crystal structures of gallic acid monohydrate and gallic acid monopyridine solvate, see: Clarke et al. (2011 ▶); Jiang et al. (2000 ▶). For π–π inter­actions in natural flavonoids, see: Jiang et al. (2002 ▶, 2009 ▶).

Experimental

Crystal data

C5H5N·C7H6O5 M = 249.22 Monoclinic, a = 9.335 (1) Å b = 10.435 (2) Å c = 11.8581 (15) Å β = 107.632 (8)° V = 1100.9 (3) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.34 × 0.20 × 0.12 mm

Data collection

Bruker SMART CCD 1000 diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.821, T max = 0.986 2601 measured reflections 1944 independent reflections 1031 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.172 S = 1.02 1944 reflections 166 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.30 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: XP in SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811043868/pk2351sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811043868/pk2351Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811043868/pk2351Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H5N·C7H6O5F(000) = 520
Mr = 249.22Dx = 1.504 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2601 reflections
a = 9.335 (1) Åθ = 2.5–25.0°
b = 10.435 (2) ŵ = 0.12 mm1
c = 11.8581 (15) ÅT = 293 K
β = 107.632 (8)°Prism, colorless
V = 1100.9 (3) Å30.34 × 0.20 × 0.12 mm
Z = 4
Bruker SMART CCD 1000 diffractometer1944 independent reflections
Radiation source: fine-focus sealed tube1031 reflections with I > 2σ(I)
graphiteRint = 0.057
ω scanθmax = 25.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −1→11
Tmin = 0.821, Tmax = 0.986k = −1→12
2601 measured reflectionsl = −14→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.066H-atom parameters constrained
wR(F2) = 0.172w = 1/[σ2(Fo2) + (0.0724P)2] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
1944 reflectionsΔρmax = 0.36 e Å3
166 parametersΔρmin = −0.30 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.026 (5)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.2507 (3)0.4817 (3)0.5719 (2)0.0455 (9)
H1A0.16130.49180.56500.068*
O20.0218 (3)0.5026 (3)0.3644 (3)0.0478 (9)
H2A−0.00030.55590.31110.09 (2)*
O30.0523 (3)0.3953 (3)0.1596 (2)0.0443 (9)
H3A0.07220.35590.10640.026 (12)*
O40.6443 (3)0.2100 (3)0.4836 (2)0.0447 (9)
H4A0.73010.20410.47940.067*
O50.5775 (3)0.1955 (3)0.2878 (2)0.0372 (8)
C10.4139 (4)0.3050 (4)0.3759 (3)0.0272 (10)
C20.3957 (4)0.3632 (4)0.4761 (3)0.0335 (10)
H2B0.47180.35810.54780.040*
C30.2654 (4)0.4285 (4)0.4696 (3)0.0319 (10)
C40.1511 (4)0.4397 (4)0.3634 (3)0.0293 (10)
C50.1690 (4)0.3824 (4)0.2629 (3)0.0299 (10)
C60.2988 (4)0.3151 (4)0.2682 (3)0.0308 (10)
H6A0.30960.27680.20040.037*
C70.5536 (4)0.2314 (4)0.3809 (3)0.0298 (10)
N10.9126 (4)0.1750 (4)0.4402 (4)0.0467 (10)
C81.1809 (5)0.0925 (5)0.4259 (5)0.0508 (13)
H8A1.27310.06300.42160.061*
C91.1691 (5)0.1366 (5)0.5296 (5)0.0544 (14)
H9A1.25320.13870.59620.065*
C101.0337 (6)0.1779 (5)0.5367 (4)0.0516 (14)
H10A1.02510.20820.60820.062*
C110.9235 (6)0.1326 (5)0.3370 (4)0.0529 (14)
H11A0.83890.13120.27080.063*
C121.0599 (6)0.0908 (5)0.3285 (4)0.0542 (14)
H12A1.06850.06190.25670.065*
U11U22U33U12U13U23
O10.0410 (17)0.066 (2)0.0299 (16)0.0120 (17)0.0106 (13)−0.0052 (16)
O20.0428 (18)0.065 (2)0.0382 (17)0.0205 (18)0.0164 (14)0.0152 (18)
O30.0319 (16)0.067 (2)0.0288 (16)0.0128 (16)0.0009 (13)−0.0029 (17)
O40.0269 (15)0.071 (2)0.0322 (16)0.0146 (17)0.0036 (13)0.0038 (16)
O50.0367 (16)0.051 (2)0.0277 (15)0.0034 (15)0.0150 (12)−0.0043 (15)
C10.024 (2)0.032 (2)0.026 (2)−0.0016 (19)0.0081 (17)0.0049 (18)
C20.027 (2)0.044 (3)0.024 (2)−0.001 (2)−0.0009 (17)−0.002 (2)
C30.036 (2)0.036 (3)0.026 (2)−0.001 (2)0.0132 (19)−0.0036 (19)
C40.027 (2)0.035 (3)0.026 (2)0.009 (2)0.0088 (17)0.0079 (19)
C50.022 (2)0.038 (3)0.026 (2)−0.003 (2)0.0023 (17)0.0054 (19)
C60.026 (2)0.043 (3)0.0227 (19)−0.005 (2)0.0056 (16)0.0005 (19)
C70.0213 (19)0.039 (3)0.026 (2)−0.005 (2)0.0024 (17)0.003 (2)
N10.036 (2)0.043 (3)0.065 (3)0.0048 (19)0.021 (2)0.005 (2)
C80.042 (3)0.039 (3)0.078 (4)0.006 (2)0.028 (3)0.013 (3)
C90.037 (3)0.054 (3)0.060 (3)−0.008 (3)−0.003 (2)0.011 (3)
C100.067 (3)0.048 (3)0.047 (3)−0.012 (3)0.028 (3)−0.009 (3)
C110.054 (3)0.048 (3)0.043 (3)−0.003 (3)−0.006 (2)0.012 (3)
C120.077 (4)0.049 (3)0.049 (3)0.004 (3)0.038 (3)0.002 (3)
O1—C31.379 (5)C4—C51.388 (5)
O1—H1A0.8200C5—C61.385 (5)
O2—C41.377 (5)C6—H6A0.9300
O2—H2A0.8200N1—C111.333 (6)
O3—C51.378 (4)N1—C101.343 (6)
O3—H3A0.8200C8—C91.348 (7)
O4—C71.275 (4)C8—C121.349 (7)
O4—H4A0.8200C8—H8A0.9300
O5—C71.248 (4)C9—C101.362 (7)
C1—C21.391 (5)C9—H9A0.9300
C1—C61.402 (5)C10—H10A0.9300
C1—C71.499 (5)C11—C121.379 (7)
C2—C31.375 (5)C11—H11A0.9300
C2—H2B0.9300C12—H12A0.9300
C3—C41.387 (5)
C3—O1—H1A109.5C1—C6—H6A120.1
C4—O2—H2A109.5O5—C7—O4123.2 (4)
C5—O3—H3A109.5O5—C7—C1120.3 (3)
C7—O4—H4A109.5O4—C7—C1116.5 (3)
C2—C1—C6119.2 (4)C11—N1—C10120.8 (4)
C2—C1—C7121.3 (3)C9—C8—C12120.4 (5)
C6—C1—C7119.5 (3)C9—C8—H8A119.8
C3—C2—C1120.2 (3)C12—C8—H8A119.8
C3—C2—H2B119.9C8—C9—C10119.9 (5)
C1—C2—H2B119.9C8—C9—H9A120.1
C2—C3—O1118.2 (3)C10—C9—H9A120.1
C2—C3—C4121.1 (4)N1—C10—C9119.8 (4)
O1—C3—C4120.7 (4)N1—C10—H10A120.1
O2—C4—C3117.9 (4)C9—C10—H10A120.1
O2—C4—C5123.1 (3)N1—C11—C12120.0 (5)
C3—C4—C5118.9 (4)N1—C11—H11A120.0
O3—C5—C6122.3 (4)C12—C11—H11A120.0
O3—C5—C4116.9 (4)C8—C12—C11119.1 (5)
C6—C5—C4120.7 (3)C8—C12—H12A120.5
C5—C6—C1119.8 (4)C11—C12—H12A120.5
C5—C6—H6A120.1
C6—C1—C2—C30.9 (6)C4—C5—C6—C1−0.2 (6)
C7—C1—C2—C3−179.0 (4)C2—C1—C6—C5−0.2 (6)
C1—C2—C3—O1178.3 (4)C7—C1—C6—C5179.7 (4)
C1—C2—C3—C4−1.2 (6)C2—C1—C7—O5−169.7 (4)
C2—C3—C4—O2177.8 (4)C6—C1—C7—O510.4 (6)
O1—C3—C4—O2−1.6 (6)C2—C1—C7—O49.5 (6)
C2—C3—C4—C50.8 (6)C6—C1—C7—O4−170.3 (4)
O1—C3—C4—C5−178.7 (4)C12—C8—C9—C101.0 (8)
O2—C4—C5—O32.7 (6)C11—N1—C10—C9−0.4 (7)
C3—C4—C5—O3179.6 (4)C8—C9—C10—N1−0.2 (8)
O2—C4—C5—C6−177.0 (4)C10—N1—C11—C120.2 (7)
C3—C4—C5—C6−0.1 (7)C9—C8—C12—C11−1.2 (8)
O3—C5—C6—C1−179.9 (4)N1—C11—C12—C80.6 (7)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O2i0.822.122.869 (3)152.
O1—H1A···O20.822.342.736 (4)110.
O2—H2A···O5ii0.821.872.675 (4)166.
O3—H3A···O4iii0.821.912.718 (3)169.
O4—H4A···N10.821.922.730 (4)169.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O2i0.822.122.869 (3)152
O1—H1A⋯O20.822.342.736 (4)110
O2—H2A⋯O5ii0.821.872.675 (4)166
O3—H3A⋯O4iii0.821.912.718 (3)169
O4—H4A⋯N10.821.922.730 (4)169

Symmetry codes: (i) ; (ii) ; (iii) .

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