| Literature DB >> 22220100 |
Fu-Yue Dong1, Jie Wu, Hai-Yan Tian, Qing-Mei Ye, Ren-Wang Jiang.
Abstract
IN THE TITLE COMPOUND (SYSTENATIC NAME: 3,4,5-trihy-droxy-benzoic acid pyridine monosolvate), C(5)H(5)N·C(7)H(6)O(5), the gallic acid mol-ecule is essentially planar (r.m.s deviation = 0.0766 Å for non-H atoms) and is linked to the pyridine mol-ecule by an O-H⋯N hydrogen bond. An intra-molecular O-H⋯O hydrogen bond occurs in the gallic acid mol-ecule. The gallic acid and pyridine mean planes make a dihedral angle 12.6 (3)°. Inter-molecular O-H⋯O and O-H⋯N hydrogen bonding involving the hy-droxy and carboxyl groups and the pyridine mol-ecule, and π-π inter-actions between inversion-related pyridines [centroid-centroid distance = 3.459 (6) Å] and between pyridine and benzene rings [centroid-centroid distance = 3.548 (6) Å], lead to a three-dimensional network in the crystal.Entities:
Year: 2011 PMID: 22220100 PMCID: PMC3247482 DOI: 10.1107/S1600536811043868
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H5N·C7H6O5 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 2601 reflections |
| θ = 2.5–25.0° | |
| µ = 0.12 mm−1 | |
| β = 107.632 (8)° | Prism, colorless |
| 0.34 × 0.20 × 0.12 mm | |
| Bruker SMART CCD 1000 diffractometer | 1944 independent reflections |
| Radiation source: fine-focus sealed tube | 1031 reflections with |
| graphite | |
| ω scan | θmax = 25.0°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 2601 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 1944 reflections | Δρmax = 0.36 e Å−3 |
| 166 parameters | Δρmin = −0.30 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.026 (5) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.2507 (3) | 0.4817 (3) | 0.5719 (2) | 0.0455 (9) | |
| H1A | 0.1613 | 0.4918 | 0.5650 | 0.068* | |
| O2 | 0.0218 (3) | 0.5026 (3) | 0.3644 (3) | 0.0478 (9) | |
| H2A | −0.0003 | 0.5559 | 0.3111 | 0.09 (2)* | |
| O3 | 0.0523 (3) | 0.3953 (3) | 0.1596 (2) | 0.0443 (9) | |
| H3A | 0.0722 | 0.3559 | 0.1064 | 0.026 (12)* | |
| O4 | 0.6443 (3) | 0.2100 (3) | 0.4836 (2) | 0.0447 (9) | |
| H4A | 0.7301 | 0.2041 | 0.4794 | 0.067* | |
| O5 | 0.5775 (3) | 0.1955 (3) | 0.2878 (2) | 0.0372 (8) | |
| C1 | 0.4139 (4) | 0.3050 (4) | 0.3759 (3) | 0.0272 (10) | |
| C2 | 0.3957 (4) | 0.3632 (4) | 0.4761 (3) | 0.0335 (10) | |
| H2B | 0.4718 | 0.3581 | 0.5478 | 0.040* | |
| C3 | 0.2654 (4) | 0.4285 (4) | 0.4696 (3) | 0.0319 (10) | |
| C4 | 0.1511 (4) | 0.4397 (4) | 0.3634 (3) | 0.0293 (10) | |
| C5 | 0.1690 (4) | 0.3824 (4) | 0.2629 (3) | 0.0299 (10) | |
| C6 | 0.2988 (4) | 0.3151 (4) | 0.2682 (3) | 0.0308 (10) | |
| H6A | 0.3096 | 0.2768 | 0.2004 | 0.037* | |
| C7 | 0.5536 (4) | 0.2314 (4) | 0.3809 (3) | 0.0298 (10) | |
| N1 | 0.9126 (4) | 0.1750 (4) | 0.4402 (4) | 0.0467 (10) | |
| C8 | 1.1809 (5) | 0.0925 (5) | 0.4259 (5) | 0.0508 (13) | |
| H8A | 1.2731 | 0.0630 | 0.4216 | 0.061* | |
| C9 | 1.1691 (5) | 0.1366 (5) | 0.5296 (5) | 0.0544 (14) | |
| H9A | 1.2532 | 0.1387 | 0.5962 | 0.065* | |
| C10 | 1.0337 (6) | 0.1779 (5) | 0.5367 (4) | 0.0516 (14) | |
| H10A | 1.0251 | 0.2082 | 0.6082 | 0.062* | |
| C11 | 0.9235 (6) | 0.1326 (5) | 0.3370 (4) | 0.0529 (14) | |
| H11A | 0.8389 | 0.1312 | 0.2708 | 0.063* | |
| C12 | 1.0599 (6) | 0.0908 (5) | 0.3285 (4) | 0.0542 (14) | |
| H12A | 1.0685 | 0.0619 | 0.2567 | 0.065* |
| O1 | 0.0410 (17) | 0.066 (2) | 0.0299 (16) | 0.0120 (17) | 0.0106 (13) | −0.0052 (16) |
| O2 | 0.0428 (18) | 0.065 (2) | 0.0382 (17) | 0.0205 (18) | 0.0164 (14) | 0.0152 (18) |
| O3 | 0.0319 (16) | 0.067 (2) | 0.0288 (16) | 0.0128 (16) | 0.0009 (13) | −0.0029 (17) |
| O4 | 0.0269 (15) | 0.071 (2) | 0.0322 (16) | 0.0146 (17) | 0.0036 (13) | 0.0038 (16) |
| O5 | 0.0367 (16) | 0.051 (2) | 0.0277 (15) | 0.0034 (15) | 0.0150 (12) | −0.0043 (15) |
| C1 | 0.024 (2) | 0.032 (2) | 0.026 (2) | −0.0016 (19) | 0.0081 (17) | 0.0049 (18) |
| C2 | 0.027 (2) | 0.044 (3) | 0.024 (2) | −0.001 (2) | −0.0009 (17) | −0.002 (2) |
| C3 | 0.036 (2) | 0.036 (3) | 0.026 (2) | −0.001 (2) | 0.0132 (19) | −0.0036 (19) |
| C4 | 0.027 (2) | 0.035 (3) | 0.026 (2) | 0.009 (2) | 0.0088 (17) | 0.0079 (19) |
| C5 | 0.022 (2) | 0.038 (3) | 0.026 (2) | −0.003 (2) | 0.0023 (17) | 0.0054 (19) |
| C6 | 0.026 (2) | 0.043 (3) | 0.0227 (19) | −0.005 (2) | 0.0056 (16) | 0.0005 (19) |
| C7 | 0.0213 (19) | 0.039 (3) | 0.026 (2) | −0.005 (2) | 0.0024 (17) | 0.003 (2) |
| N1 | 0.036 (2) | 0.043 (3) | 0.065 (3) | 0.0048 (19) | 0.021 (2) | 0.005 (2) |
| C8 | 0.042 (3) | 0.039 (3) | 0.078 (4) | 0.006 (2) | 0.028 (3) | 0.013 (3) |
| C9 | 0.037 (3) | 0.054 (3) | 0.060 (3) | −0.008 (3) | −0.003 (2) | 0.011 (3) |
| C10 | 0.067 (3) | 0.048 (3) | 0.047 (3) | −0.012 (3) | 0.028 (3) | −0.009 (3) |
| C11 | 0.054 (3) | 0.048 (3) | 0.043 (3) | −0.003 (3) | −0.006 (2) | 0.012 (3) |
| C12 | 0.077 (4) | 0.049 (3) | 0.049 (3) | 0.004 (3) | 0.038 (3) | 0.002 (3) |
| O1—C3 | 1.379 (5) | C4—C5 | 1.388 (5) |
| O1—H1A | 0.8200 | C5—C6 | 1.385 (5) |
| O2—C4 | 1.377 (5) | C6—H6A | 0.9300 |
| O2—H2A | 0.8200 | N1—C11 | 1.333 (6) |
| O3—C5 | 1.378 (4) | N1—C10 | 1.343 (6) |
| O3—H3A | 0.8200 | C8—C9 | 1.348 (7) |
| O4—C7 | 1.275 (4) | C8—C12 | 1.349 (7) |
| O4—H4A | 0.8200 | C8—H8A | 0.9300 |
| O5—C7 | 1.248 (4) | C9—C10 | 1.362 (7) |
| C1—C2 | 1.391 (5) | C9—H9A | 0.9300 |
| C1—C6 | 1.402 (5) | C10—H10A | 0.9300 |
| C1—C7 | 1.499 (5) | C11—C12 | 1.379 (7) |
| C2—C3 | 1.375 (5) | C11—H11A | 0.9300 |
| C2—H2B | 0.9300 | C12—H12A | 0.9300 |
| C3—C4 | 1.387 (5) | ||
| C3—O1—H1A | 109.5 | C1—C6—H6A | 120.1 |
| C4—O2—H2A | 109.5 | O5—C7—O4 | 123.2 (4) |
| C5—O3—H3A | 109.5 | O5—C7—C1 | 120.3 (3) |
| C7—O4—H4A | 109.5 | O4—C7—C1 | 116.5 (3) |
| C2—C1—C6 | 119.2 (4) | C11—N1—C10 | 120.8 (4) |
| C2—C1—C7 | 121.3 (3) | C9—C8—C12 | 120.4 (5) |
| C6—C1—C7 | 119.5 (3) | C9—C8—H8A | 119.8 |
| C3—C2—C1 | 120.2 (3) | C12—C8—H8A | 119.8 |
| C3—C2—H2B | 119.9 | C8—C9—C10 | 119.9 (5) |
| C1—C2—H2B | 119.9 | C8—C9—H9A | 120.1 |
| C2—C3—O1 | 118.2 (3) | C10—C9—H9A | 120.1 |
| C2—C3—C4 | 121.1 (4) | N1—C10—C9 | 119.8 (4) |
| O1—C3—C4 | 120.7 (4) | N1—C10—H10A | 120.1 |
| O2—C4—C3 | 117.9 (4) | C9—C10—H10A | 120.1 |
| O2—C4—C5 | 123.1 (3) | N1—C11—C12 | 120.0 (5) |
| C3—C4—C5 | 118.9 (4) | N1—C11—H11A | 120.0 |
| O3—C5—C6 | 122.3 (4) | C12—C11—H11A | 120.0 |
| O3—C5—C4 | 116.9 (4) | C8—C12—C11 | 119.1 (5) |
| C6—C5—C4 | 120.7 (3) | C8—C12—H12A | 120.5 |
| C5—C6—C1 | 119.8 (4) | C11—C12—H12A | 120.5 |
| C5—C6—H6A | 120.1 | ||
| C6—C1—C2—C3 | 0.9 (6) | C4—C5—C6—C1 | −0.2 (6) |
| C7—C1—C2—C3 | −179.0 (4) | C2—C1—C6—C5 | −0.2 (6) |
| C1—C2—C3—O1 | 178.3 (4) | C7—C1—C6—C5 | 179.7 (4) |
| C1—C2—C3—C4 | −1.2 (6) | C2—C1—C7—O5 | −169.7 (4) |
| C2—C3—C4—O2 | 177.8 (4) | C6—C1—C7—O5 | 10.4 (6) |
| O1—C3—C4—O2 | −1.6 (6) | C2—C1—C7—O4 | 9.5 (6) |
| C2—C3—C4—C5 | 0.8 (6) | C6—C1—C7—O4 | −170.3 (4) |
| O1—C3—C4—C5 | −178.7 (4) | C12—C8—C9—C10 | 1.0 (8) |
| O2—C4—C5—O3 | 2.7 (6) | C11—N1—C10—C9 | −0.4 (7) |
| C3—C4—C5—O3 | 179.6 (4) | C8—C9—C10—N1 | −0.2 (8) |
| O2—C4—C5—C6 | −177.0 (4) | C10—N1—C11—C12 | 0.2 (7) |
| C3—C4—C5—C6 | −0.1 (7) | C9—C8—C12—C11 | −1.2 (8) |
| O3—C5—C6—C1 | −179.9 (4) | N1—C11—C12—C8 | 0.6 (7) |
| H··· | ||||
| O1—H1A···O2i | 0.82 | 2.12 | 2.869 (3) | 152. |
| O1—H1A···O2 | 0.82 | 2.34 | 2.736 (4) | 110. |
| O2—H2A···O5ii | 0.82 | 1.87 | 2.675 (4) | 166. |
| O3—H3A···O4iii | 0.82 | 1.91 | 2.718 (3) | 169. |
| O4—H4A···N1 | 0.82 | 1.92 | 2.730 (4) | 169. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.82 | 2.12 | 2.869 (3) | 152 |
| O1—H1 | 0.82 | 2.34 | 2.736 (4) | 110 |
| O2—H2 | 0.82 | 1.87 | 2.675 (4) | 166 |
| O3—H3 | 0.82 | 1.91 | 2.718 (3) | 169 |
| O4—H4 | 0.82 | 1.92 | 2.730 (4) | 169 |
Symmetry codes: (i) ; (ii) ; (iii) .