Literature DB >> 22412563

1,2-Bis[(3,6,9-trimethyl-3,12-ep-oxy-3,4,5,5a,6,7,8,8a,9,10,12,12a-dodeca-hydro-pyrano[4,3-j][1,2]benzodioxepin-4-yl)-oxy]ethane.

Liwei Jia, Zhengyu Yue, Dongying Lv, Po Gao.   

Abstract

The title compound, C(32)H(50)O(10), prepared from a mixture of α- and β-dihydro-artemisinin, has two β-arteether moieties linked via an -OCH(2)CH(2)O- bridge, so that the mol-ecule is symmetric about the bridge. Each asymmetric unit contains a β-arteether moiety and an -OCH(2) group, which is only one-half of the mol-ecule. The endo-peroxide bridges of the parent compounds have been retained in each half of the diol-bridged dimer. The rings exhibit chair and twist-boat conformations.

Entities:  

Year:  2012        PMID: 22412563      PMCID: PMC3295452          DOI: 10.1107/S1600536812005089

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature and structures, see: Brossi et al. (1988 ▶); Dominguez Gerpe et al. (1988 ▶); Flack & Bernardinelli (2000 ▶); Flippen-Anderson et al. (1989 ▶); Haynes et al. (2002 ▶); Luo et al. (1984 ▶); Paik et al. (2006 ▶); Qinghaosu Research Group (1980 ▶); Venugopalan et al. (1995 ▶); Woerdenbag et al. (1993 ▶); Yue et al. (2006 ▶). For the synthesis, see: Posner et al. (1997 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C32H50O10 M = 594.72 Monoclinic, a = 18.033 (4) Å b = 9.3127 (19) Å c = 11.061 (2) Å β = 123.58 (3)° V = 1547.5 (8) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 295 K 0.42 × 0.38 × 0.31 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.962, T max = 0.972 6717 measured reflections 1614 independent reflections 1195 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.129 S = 1.10 1614 reflections 194 parameters 1 restraint H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.20 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812005089/jj2118sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812005089/jj2118Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812005089/jj2118Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C32H50O10F(000) = 644
Mr = 594.72Dx = 1.276 Mg m3
Monoclinic, C2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2yCell parameters from 5507 reflections
a = 18.033 (4) Åθ = 3.7–26.0°
b = 9.3127 (19) ŵ = 0.09 mm1
c = 11.061 (2) ÅT = 295 K
β = 123.58 (3)°Prism, colorless
V = 1547.5 (8) Å30.42 × 0.38 × 0.31 mm
Z = 2
Rigaku R-AXIS RAPID diffractometer1614 independent reflections
Radiation source: fine-focus sealed tube1195 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.043
Detector resolution: 10.000 pixels mm-1θmax = 26.0°, θmin = 3.7°
ω scansh = −22→22
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −11→9
Tmin = 0.962, Tmax = 0.972l = −13→13
6717 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0715P)2 + 0.1671P] where P = (Fo2 + 2Fc2)/3
1614 reflections(Δ/σ)max < 0.001
194 parametersΔρmax = 0.20 e Å3
1 restraintΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.85534 (15)0.7920 (3)0.4203 (3)0.0696 (7)
O20.81128 (13)0.6711 (3)0.4401 (2)0.0638 (7)
O30.76331 (14)0.7918 (3)0.1695 (2)0.0578 (6)
O40.68018 (14)0.8818 (2)0.2453 (3)0.0600 (6)
O50.52997 (15)0.8430 (3)0.1553 (3)0.0655 (7)
C10.8536 (2)0.7701 (5)0.2924 (4)0.0638 (9)
C20.8844 (2)0.6212 (5)0.2839 (5)0.0741 (11)
H2A0.91720.62840.23820.089*
H2B0.92510.58580.38180.089*
C30.8104 (2)0.5128 (4)0.2012 (5)0.0694 (10)
H3A0.83690.42110.20410.083*
H3B0.77400.54270.10050.083*
C40.7496 (2)0.4904 (4)0.2559 (4)0.0590 (8)
H4A0.78360.43070.34310.071*
C50.6668 (2)0.4016 (4)0.1475 (4)0.0652 (9)
H50.63360.45460.05570.078*
C60.6066 (2)0.3825 (4)0.2020 (4)0.0700 (10)
H6A0.55350.33080.12980.084*
H6B0.63710.32550.29010.084*
C70.5804 (2)0.5246 (4)0.2323 (4)0.0642 (9)
H7A0.54080.50850.26450.077*
H7B0.54850.58050.14350.077*
C80.6620 (2)0.6093 (4)0.3487 (4)0.0576 (8)
H80.69170.54950.43620.069*
C90.6407 (2)0.7511 (4)0.3906 (4)0.0634 (9)
H90.69640.78250.47860.076*
C100.6163 (2)0.8677 (4)0.2800 (4)0.0643 (9)
H100.61470.95860.32310.077*
C110.6992 (2)0.7533 (3)0.1973 (4)0.0505 (7)
H110.64520.72320.10590.061*
C120.72923 (18)0.6310 (4)0.3060 (3)0.0497 (7)
C130.9078 (3)0.8911 (6)0.2898 (5)0.0916 (15)
H13A0.89080.97960.31250.137*
H13B0.89740.89770.19500.137*
H13C0.96980.87320.36030.137*
C140.6926 (4)0.2560 (5)0.1183 (6)0.0950 (14)
H14A0.72750.20400.20780.143*
H14B0.72690.27000.07680.143*
H14C0.63980.20250.05200.143*
C150.5731 (3)0.7405 (6)0.4325 (5)0.0923 (15)
H15A0.51620.71370.34900.138*
H15B0.56840.83180.46800.138*
H15C0.59240.66930.50700.138*
C160.4917 (3)0.9620 (4)0.0595 (5)0.0737 (10)
H16A0.51561.04980.11520.088*
H16B0.42800.96190.01620.088*
U11U22U33U12U13U23
O10.0611 (13)0.0951 (18)0.0531 (14)−0.0343 (13)0.0319 (11)−0.0154 (14)
O20.0523 (11)0.0890 (17)0.0424 (12)−0.0224 (12)0.0214 (9)−0.0031 (12)
O30.0544 (11)0.0700 (15)0.0532 (13)−0.0115 (10)0.0324 (10)0.0023 (11)
O40.0605 (13)0.0547 (13)0.0710 (16)−0.0134 (11)0.0401 (12)−0.0100 (12)
O50.0583 (12)0.0607 (14)0.0762 (17)−0.0088 (11)0.0364 (12)−0.0090 (13)
C10.0488 (17)0.091 (2)0.0528 (19)−0.0159 (17)0.0287 (15)−0.0025 (19)
C20.0547 (19)0.098 (3)0.073 (3)0.002 (2)0.0372 (18)0.007 (2)
C30.067 (2)0.078 (3)0.067 (2)0.0031 (18)0.0399 (19)0.002 (2)
C40.0566 (17)0.061 (2)0.050 (2)−0.0021 (15)0.0237 (15)0.0081 (16)
C50.073 (2)0.056 (2)0.055 (2)−0.0097 (17)0.0284 (18)0.0009 (17)
C60.073 (2)0.060 (2)0.062 (2)−0.0256 (18)0.0282 (18)−0.0002 (19)
C70.0589 (18)0.068 (2)0.065 (2)−0.0213 (16)0.0337 (17)−0.0048 (18)
C80.0548 (17)0.071 (2)0.0455 (18)−0.0178 (15)0.0267 (15)−0.0040 (17)
C90.0580 (18)0.086 (2)0.054 (2)−0.0178 (17)0.0354 (16)−0.0146 (19)
C100.0571 (17)0.068 (2)0.074 (2)−0.0143 (17)0.0399 (17)−0.020 (2)
C110.0509 (17)0.0509 (17)0.0500 (18)−0.0146 (13)0.0281 (15)−0.0052 (14)
C120.0446 (14)0.0619 (19)0.0361 (15)−0.0144 (13)0.0183 (12)−0.0016 (14)
C130.073 (2)0.129 (4)0.079 (3)−0.044 (3)0.046 (2)−0.013 (3)
C140.116 (3)0.066 (3)0.100 (4)−0.009 (2)0.057 (3)−0.013 (3)
C150.087 (3)0.129 (4)0.086 (3)−0.030 (3)0.063 (3)−0.024 (3)
C160.071 (2)0.0533 (19)0.093 (3)0.0042 (17)0.043 (2)−0.005 (2)
O1—C11.412 (4)C6—H6B0.9700
O1—O21.463 (3)C7—C81.532 (4)
O2—C121.450 (3)C7—H7A0.9700
O3—C111.397 (3)C7—H7B0.9700
O3—C11.446 (4)C8—C91.518 (5)
O4—C101.407 (4)C8—C121.538 (4)
O4—C111.426 (4)C8—H80.9800
O5—C101.416 (4)C9—C101.508 (5)
O5—C161.421 (5)C9—C151.528 (5)
C1—C131.502 (5)C9—H90.9800
C1—C21.516 (6)C10—H100.9800
C2—C31.512 (6)C11—C121.522 (4)
C2—H2A0.9700C11—H110.9800
C2—H2B0.9700C13—H13A0.9600
C3—C41.532 (5)C13—H13B0.9600
C3—H3A0.9700C13—H13C0.9600
C3—H3B0.9700C14—H14A0.9600
C4—C51.539 (5)C14—H14B0.9600
C4—C121.544 (5)C14—H14C0.9600
C4—H4A0.9800C15—H15A0.9600
C5—C61.515 (5)C15—H15B0.9600
C5—C141.525 (6)C15—H15C0.9600
C5—H50.9800C16—C16i1.504 (9)
C6—C71.504 (5)C16—H16A0.9700
C6—H6A0.9700C16—H16B0.9700
C1—O1—O2109.0 (2)C7—C8—H8106.5
C12—O2—O1112.1 (2)C12—C8—H8106.5
C11—O3—C1113.3 (2)C10—C9—C8112.8 (3)
C10—O4—C11115.2 (2)C10—C9—C15111.6 (3)
C10—O5—C16114.8 (3)C8—C9—C15114.6 (3)
O1—C1—O3108.1 (3)C10—C9—H9105.6
O1—C1—C13104.9 (3)C8—C9—H9105.6
O3—C1—C13106.5 (3)C15—C9—H9105.6
O1—C1—C2112.8 (3)O4—C10—O5112.0 (3)
O3—C1—C2109.3 (3)O4—C10—C9111.9 (3)
C13—C1—C2114.8 (3)O5—C10—C9110.1 (3)
C3—C2—C1114.7 (3)O4—C10—H10107.6
C3—C2—H2A108.6O5—C10—H10107.6
C1—C2—H2A108.6C9—C10—H10107.6
C3—C2—H2B108.6O3—C11—O4105.4 (2)
C1—C2—H2B108.6O3—C11—C12113.0 (2)
H2A—C2—H2B107.6O4—C11—C12112.8 (2)
C2—C3—C4115.9 (3)O3—C11—H11108.5
C2—C3—H3A108.3O4—C11—H11108.5
C4—C3—H3A108.3C12—C11—H11108.5
C2—C3—H3B108.3O2—C12—C11109.4 (2)
C4—C3—H3B108.3O2—C12—C8104.6 (2)
H3A—C3—H3B107.4C11—C12—C8110.1 (2)
C3—C4—C5111.3 (3)O2—C12—C4106.0 (2)
C3—C4—C12113.0 (3)C11—C12—C4113.7 (2)
C5—C4—C12114.5 (3)C8—C12—C4112.5 (2)
C3—C4—H4A105.7C1—C13—H13A109.5
C5—C4—H4A105.7C1—C13—H13B109.5
C12—C4—H4A105.7H13A—C13—H13B109.5
C6—C5—C14110.4 (3)C1—C13—H13C109.5
C6—C5—C4110.7 (3)H13A—C13—H13C109.5
C14—C5—C4111.3 (3)H13B—C13—H13C109.5
C6—C5—H5108.1C5—C14—H14A109.5
C14—C5—H5108.1C5—C14—H14B109.5
C4—C5—H5108.1H14A—C14—H14B109.5
C7—C6—C5111.5 (3)C5—C14—H14C109.5
C7—C6—H6A109.3H14A—C14—H14C109.5
C5—C6—H6A109.3H14B—C14—H14C109.5
C7—C6—H6B109.3C9—C15—H15A109.5
C5—C6—H6B109.3C9—C15—H15B109.5
H6A—C6—H6B108.0H15A—C15—H15B109.5
C6—C7—C8111.5 (3)C9—C15—H15C109.5
C6—C7—H7A109.3H15A—C15—H15C109.5
C8—C7—H7A109.3H15B—C15—H15C109.5
C6—C7—H7B109.3O5—C16—C16i113.8 (3)
C8—C7—H7B109.3O5—C16—H16A108.8
H7A—C7—H7B108.0C16i—C16—H16A108.8
C9—C8—C7114.6 (3)O5—C16—H16B108.8
C9—C8—C12110.8 (3)C16i—C16—H16B108.8
C7—C8—C12111.3 (3)H16A—C16—H16B107.7
C9—C8—H8106.5
C1—O1—O2—C12−44.0 (3)C8—C9—C10—O4−51.6 (4)
O2—O1—C1—O372.2 (3)C15—C9—C10—O4177.6 (3)
O2—O1—C1—C13−174.5 (3)C8—C9—C10—O573.6 (3)
O2—O1—C1—C2−48.8 (3)C15—C9—C10—O5−57.2 (4)
C11—O3—C1—O1−31.6 (4)C1—O3—C11—O492.6 (3)
C11—O3—C1—C13−143.8 (3)C1—O3—C11—C12−31.0 (4)
C11—O3—C1—C291.6 (3)C10—O4—C11—O3−180.0 (3)
O1—C1—C2—C394.4 (4)C10—O4—C11—C12−56.3 (3)
O3—C1—C2—C3−25.9 (4)O1—O2—C12—C11−17.4 (3)
C13—C1—C2—C3−145.5 (4)O1—O2—C12—C8−135.4 (2)
C1—C2—C3—C4−56.7 (5)O1—O2—C12—C4105.6 (3)
C2—C3—C4—C5168.8 (3)O3—C11—C12—O257.2 (3)
C2—C3—C4—C1238.4 (4)O4—C11—C12—O2−62.2 (3)
C3—C4—C5—C6−179.1 (3)O3—C11—C12—C8171.6 (3)
C12—C4—C5—C6−49.4 (4)O4—C11—C12—C852.2 (3)
C3—C4—C5—C1457.7 (4)O3—C11—C12—C4−61.0 (3)
C12—C4—C5—C14−172.7 (3)O4—C11—C12—C4179.6 (2)
C14—C5—C6—C7179.8 (3)C9—C8—C12—O268.0 (3)
C4—C5—C6—C756.0 (4)C7—C8—C12—O2−163.2 (3)
C5—C6—C7—C8−60.4 (4)C9—C8—C12—C11−49.4 (3)
C6—C7—C8—C9−177.2 (3)C7—C8—C12—C1179.4 (3)
C6—C7—C8—C1256.1 (4)C9—C8—C12—C4−177.4 (3)
C7—C8—C9—C10−77.1 (3)C7—C8—C12—C4−48.6 (4)
C12—C8—C9—C1049.9 (4)C3—C4—C12—O2−71.1 (3)
C7—C8—C9—C1552.1 (4)C5—C4—C12—O2160.1 (3)
C12—C8—C9—C15179.1 (3)C3—C4—C12—C1149.1 (4)
C11—O4—C10—O5−69.3 (4)C5—C4—C12—C11−79.8 (3)
C11—O4—C10—C954.9 (4)C3—C4—C12—C8175.2 (3)
C16—O5—C10—O4−69.2 (4)C5—C4—C12—C846.4 (4)
C16—O5—C10—C9165.7 (3)C10—O5—C16—C16i92.8 (4)
  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure of an ether dimer of deoxydihydroqinghaosu, a potential metabolite of the antimalarial arteether.

Authors:  J L Flippen-Anderson; C George; R Gilardi; Q S Yu; L Dominguez; A Brossi
Journal:  Acta Crystallogr C       Date:  1989-02-15       Impact factor: 1.172

3.  Second generation, orally active, antimalarial, artemisinin-derived trioxane dimers with high stability, efficacy, and anticancer activity.

Authors:  Ik-Hyeon Paik; Suji Xie; Theresa A Shapiro; Tanzina Labonte; Amy A Narducci Sarjeant; Astrid C Baege; Gary H Posner
Journal:  J Med Chem       Date:  2006-05-04       Impact factor: 7.446

4.  Trioxane dimers have potent antimalarial, antiproliferative and antitumor activities in vitro.

Authors:  G H Posner; P Ploypradith; W Hapangama; D Wang; J N Cumming; P Dolan; T W Kensler; D Klinedinst; T A Shapiro; Q Y Zheng; C K Murray; L G Pilkington; L R Jayasinghe; J F Bray; R Daughenbaugh
Journal:  Bioorg Med Chem       Date:  1997-07       Impact factor: 3.641

5.  A dimer of alpha- and beta-dihydroartemisinin: bis(3,6,9-trimethyl-3,12-epidioxy-3,4,5,5a,6,7,8,8a,9,10-decahydro-12H-pyrano[4,3-j][1,2]benzodioxepin-10-yl) ether.

Authors:  Zheng Yu Yue; Shu Hui Li; Po Gao; Jin Hui Zhang; Peng Fei Yan
Journal:  Acta Crystallogr C       Date:  2006-04-13       Impact factor: 1.172

6.  Cytotoxicity of artemisinin-related endoperoxides to Ehrlich ascites tumor cells.

Authors:  H J Woerdenbag; T A Moskal; N Pras; T M Malingré; F S el-Feraly; H H Kampinga; A W Konings
Journal:  J Nat Prod       Date:  1993-06       Impact factor: 4.050

7.  Arteether, a new antimalarial drug: synthesis and antimalarial properties.

Authors:  A Brossi; B Venugopalan; L Dominguez Gerpe; H J Yeh; J L Flippen-Anderson; P Buchs; X D Luo; W Milhous; W Peters
Journal:  J Med Chem       Date:  1988-03       Impact factor: 7.446

  7 in total

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