Literature DB >> 22412536

Methyl 1-ethyl-7-methyl-4-oxo-1,4-di-hydro-1,8-naphthyridine-3-carboxyl-ate monohydrate.

Rehana Yasmeen, Muhammad Zia-Ur-Rehman, Muhammad Azim Khattak, Muhammad Nadeem Arshad, Islam Ullah Khan.   

Abstract

In the structure of the title compound, C(13)H(14)N(2)O(3)·H(2)O, all atoms of the organic molecule except the terminal methyl group of the ethyl group attached to the N atom of the pyridinone ring are roughly coplanar, with an r.m.s. deviation of 0.0897 Å. In the crystal, C-H⋯O contacts link pairs of naphthyridine mol-ecules into head-to-tail dimers. These are joined by strong O-H⋯O hydrogen bonds from the water molecules into infinite chains along the a axis.

Entities:  

Year:  2012        PMID: 22412536      PMCID: PMC3295425          DOI: 10.1107/S1600536812004333

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the coordination properties of 1,8-naphthyridine ligands, see: Gavrilova & Bosnich (2004 ▶); Mintert & Sheldrick (1995 ▶). For their biological activity, see: Chen et al. (2001 ▶); Ferrarini et al. (2000 ▶); Roma et al. (2000 ▶). For related structures, see: Deeba, Khan, Zia-ur-Rehman, Çaylak & Şahin (2009 ▶); Deeba, Khan, Zia-ur-Rehman, Şahin & Çaylak (2009 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C13H14N2O3·H2O M = 264.28 Monoclinic, a = 4.6989 (1) Å b = 23.7246 (7) Å c = 11.3635 (3) Å β = 91.646 (1)° V = 1266.27 (6) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.19 × 0.09 × 0.07 mm

Data collection

Bruker Kappa APEXII CCD diffractometer 12165 measured reflections 3128 independent reflections 2152 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.163 S = 0.98 3128 reflections 181 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812004333/sj5191sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004333/sj5191Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812004333/sj5191Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14N2O3·H2OF(000) = 560
Mr = 264.28Dx = 1.386 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3082 reflections
a = 4.6989 (1) Åθ = 2.5–27.9°
b = 23.7246 (7) ŵ = 0.10 mm1
c = 11.3635 (3) ÅT = 296 K
β = 91.646 (1)°Needle, white
V = 1266.27 (6) Å30.19 × 0.09 × 0.07 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer2152 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.026
Graphite monochromatorθmax = 28.3°, θmin = 1.7°
φ and ω scansh = −6→6
12165 measured reflectionsk = −29→31
3128 independent reflectionsl = −14→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.163H atoms treated by a mixture of independent and constrained refinement
S = 0.98w = 1/[σ2(Fo2) + (0.0956P)2 + 0.2245P] where P = (Fo2 + 2Fc2)/3
3128 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6664 (3)0.38694 (7)0.77501 (14)0.0320 (4)
C20.7843 (3)0.42644 (7)0.69281 (14)0.0309 (4)
C30.6891 (3)0.42666 (7)0.57746 (15)0.0328 (4)
H30.76870.45300.52740.039*
C40.3706 (3)0.35103 (7)0.60267 (14)0.0307 (4)
C50.4552 (3)0.34821 (7)0.72122 (14)0.0310 (4)
C60.3282 (4)0.30618 (7)0.78758 (16)0.0381 (4)
H60.37640.30230.86710.046*
C70.1332 (4)0.27070 (7)0.73569 (16)0.0398 (4)
H70.04810.24260.77960.048*
C80.0627 (3)0.27700 (7)0.61615 (15)0.0349 (4)
C91.0005 (3)0.46984 (7)0.72231 (14)0.0330 (4)
C101.2543 (4)0.51876 (9)0.87123 (18)0.0525 (5)
H10A1.43640.51020.83950.079*
H10B1.27130.52020.95560.079*
H10C1.18960.55460.84180.079*
C11−0.1477 (4)0.23821 (8)0.55685 (18)0.0448 (4)
H11A−0.21170.25430.48330.067*
H11B−0.30740.23290.60650.067*
H11C−0.05900.20250.54280.067*
C120.3991 (4)0.39784 (8)0.40625 (15)0.0421 (4)
H12A0.44150.43580.38010.051*
H12B0.19450.39260.39940.051*
C130.5409 (5)0.35647 (9)0.32742 (18)0.0560 (6)
H19A0.47110.36160.24790.084*
H19B0.49950.31880.35270.084*
H19C0.74300.36250.33110.084*
N10.1777 (3)0.31671 (6)0.55030 (12)0.0346 (3)
N20.4905 (3)0.39199 (6)0.53125 (12)0.0331 (3)
O10.7306 (3)0.38354 (6)0.88110 (11)0.0449 (4)
O21.1179 (3)0.49770 (6)0.64973 (12)0.0529 (4)
O31.0520 (3)0.47558 (6)0.83641 (11)0.0483 (4)
O40.2506 (4)0.38795 (8)0.03949 (15)0.0678 (5)
H4B0.099 (7)0.3912 (13)−0.025 (3)0.102*
H4A0.394 (7)0.3865 (14)−0.003 (3)0.102*
U11U22U33U12U13U23
C10.0303 (8)0.0350 (9)0.0306 (8)0.0031 (6)−0.0017 (6)0.0001 (7)
C20.0285 (8)0.0320 (8)0.0322 (8)0.0010 (6)−0.0005 (6)−0.0023 (7)
C30.0334 (8)0.0311 (8)0.0339 (9)−0.0009 (6)0.0000 (6)0.0004 (7)
C40.0294 (8)0.0304 (8)0.0321 (8)0.0033 (6)−0.0007 (6)−0.0006 (6)
C50.0301 (8)0.0305 (8)0.0324 (8)0.0020 (6)0.0002 (6)0.0006 (7)
C60.0403 (9)0.0399 (10)0.0341 (9)−0.0007 (7)0.0005 (7)0.0025 (7)
C70.0406 (9)0.0368 (9)0.0421 (10)−0.0045 (7)0.0036 (7)0.0030 (8)
C80.0291 (8)0.0325 (8)0.0433 (9)0.0011 (6)0.0029 (7)−0.0062 (7)
C90.0301 (8)0.0349 (9)0.0338 (9)0.0015 (7)−0.0019 (6)−0.0006 (7)
C100.0581 (12)0.0563 (12)0.0427 (11)−0.0220 (10)−0.0066 (9)−0.0083 (9)
C110.0428 (10)0.0412 (10)0.0505 (11)−0.0069 (8)0.0010 (8)−0.0079 (8)
C120.0480 (10)0.0434 (10)0.0342 (9)−0.0084 (8)−0.0126 (8)0.0078 (8)
C130.0709 (14)0.0609 (13)0.0361 (10)−0.0118 (11)−0.0036 (9)−0.0068 (9)
N10.0317 (7)0.0341 (7)0.0377 (8)−0.0003 (6)−0.0017 (6)−0.0028 (6)
N20.0348 (7)0.0347 (8)0.0296 (7)−0.0011 (6)−0.0041 (5)0.0011 (6)
O10.0472 (7)0.0558 (8)0.0313 (7)−0.0130 (6)−0.0069 (5)0.0055 (6)
O20.0583 (8)0.0615 (9)0.0388 (7)−0.0266 (7)−0.0020 (6)0.0047 (6)
O30.0571 (8)0.0544 (8)0.0331 (7)−0.0227 (6)−0.0046 (6)−0.0034 (6)
O40.0642 (10)0.0912 (13)0.0477 (9)−0.0087 (9)−0.0003 (8)0.0004 (8)
C1—O11.237 (2)C9—O31.319 (2)
C1—C21.445 (2)C10—O31.445 (2)
C1—C51.472 (2)C10—H10A0.9600
C2—C31.373 (2)C10—H10B0.9600
C2—C91.478 (2)C10—H10C0.9600
C3—N21.340 (2)C11—H11A0.9600
C3—H30.9300C11—H11B0.9600
C4—N11.344 (2)C11—H11C0.9600
C4—N21.395 (2)C12—N21.479 (2)
C4—C51.395 (2)C12—C131.498 (3)
C5—C61.395 (2)C12—H12A0.9700
C6—C71.366 (2)C12—H12B0.9700
C6—H60.9300C13—H19A0.9600
C7—C81.397 (2)C13—H19B0.9600
C7—H70.9300C13—H19C0.9600
C8—N11.328 (2)O4—H4B1.01 (4)
C8—C111.497 (2)O4—H4A0.84 (3)
C9—O21.203 (2)
O1—C1—C2125.82 (15)H10A—C10—H10B109.5
O1—C1—C5120.43 (15)O3—C10—H10C109.5
C2—C1—C5113.75 (14)H10A—C10—H10C109.5
C3—C2—C1119.95 (14)H10B—C10—H10C109.5
C3—C2—C9114.64 (14)C8—C11—H11A109.5
C1—C2—C9125.38 (14)C8—C11—H11B109.5
N2—C3—C2125.18 (15)H11A—C11—H11B109.5
N2—C3—H3117.4C8—C11—H11C109.5
C2—C3—H3117.4H11A—C11—H11C109.5
N1—C4—N2116.27 (14)H11B—C11—H11C109.5
N1—C4—C5124.62 (15)N2—C12—C13113.02 (16)
N2—C4—C5119.10 (14)N2—C12—H12A109.0
C6—C5—C4116.23 (15)C13—C12—H12A109.0
C6—C5—C1121.03 (15)N2—C12—H12B109.0
C4—C5—C1122.75 (14)C13—C12—H12B109.0
C7—C6—C5119.97 (16)H12A—C12—H12B107.8
C7—C6—H6120.0C12—C13—H19A109.5
C5—C6—H6120.0C12—C13—H19B109.5
C6—C7—C8119.43 (16)H19A—C13—H19B109.5
C6—C7—H7120.3C12—C13—H19C109.5
C8—C7—H7120.3H19A—C13—H19C109.5
N1—C8—C7122.34 (15)H19B—C13—H19C109.5
N1—C8—C11117.19 (16)C8—N1—C4117.42 (14)
C7—C8—C11120.48 (16)C3—N2—C4119.21 (14)
O2—C9—O3122.85 (15)C3—N2—C12119.92 (14)
O2—C9—C2123.56 (15)C4—N2—C12120.87 (13)
O3—C9—C2113.58 (14)C9—O3—C10116.29 (14)
O3—C10—H10A109.5H4B—O4—H4A99 (3)
O3—C10—H10B109.5
O1—C1—C2—C3−178.42 (16)C3—C2—C9—O2−10.8 (2)
C5—C1—C2—C32.3 (2)C1—C2—C9—O2171.14 (17)
O1—C1—C2—C9−0.5 (3)C3—C2—C9—O3168.67 (15)
C5—C1—C2—C9−179.75 (14)C1—C2—C9—O3−9.3 (2)
C1—C2—C3—N2−0.6 (2)C7—C8—N1—C40.8 (2)
C9—C2—C3—N2−178.77 (15)C11—C8—N1—C4−178.85 (14)
N1—C4—C5—C60.4 (2)N2—C4—N1—C8179.33 (14)
N2—C4—C5—C6−179.72 (14)C5—C4—N1—C8−0.8 (2)
N1—C4—C5—C1−179.66 (14)C2—C3—N2—C4−1.5 (2)
N2—C4—C5—C10.2 (2)C2—C3—N2—C12177.86 (16)
O1—C1—C5—C6−1.5 (2)N1—C4—N2—C3−178.45 (14)
C2—C1—C5—C6177.77 (14)C5—C4—N2—C31.7 (2)
O1—C1—C5—C4178.56 (15)N1—C4—N2—C122.2 (2)
C2—C1—C5—C4−2.1 (2)C5—C4—N2—C12−177.68 (15)
C4—C5—C6—C70.0 (2)C13—C12—N2—C399.01 (19)
C1—C5—C6—C7−179.89 (16)C13—C12—N2—C4−81.6 (2)
C5—C6—C7—C80.0 (3)O2—C9—O3—C101.6 (3)
C6—C7—C8—N1−0.4 (3)C2—C9—O3—C10−177.90 (15)
C6—C7—C8—C11179.24 (16)
D—H···AD—HH···AD···AD—H···A
O4—H4B···O1i1.01 (4)2.02 (4)2.994 (2)163 (3)
O4—H4A···O1ii0.84 (3)2.09 (3)2.928 (2)176 (3)
O4—H4B···O3i1.01 (4)2.56 (3)3.224 (2)124 (2)
C3—H3···O2iii0.932.403.293 (2)160
C11—H11C···O4iv0.962.593.539 (3)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4B⋯O1i1.01 (4)2.02 (4)2.994 (2)163 (3)
O4—H4A⋯O1ii0.84 (3)2.09 (3)2.928 (2)176 (3)
O4—H4B⋯O3i1.01 (4)2.56 (3)3.224 (2)124 (2)
C3—H3⋯O2iii0.932.403.293 (2)160
C11—H11C⋯O4iv0.962.593.539 (3)168

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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