| Literature DB >> 22412536 |
Rehana Yasmeen, Muhammad Zia-Ur-Rehman, Muhammad Azim Khattak, Muhammad Nadeem Arshad, Islam Ullah Khan.
Abstract
In the structure of the title compound, C(13)H(14)N(2)O(3)·H(2)O, all atoms of the organic molecule except the terminal methyl group of the ethyl group attached to the N atom of the pyridinone ring are roughly coplanar, with an r.m.s. deviation of 0.0897 Å. In the crystal, C-H⋯O contacts link pairs of naphthyridine mol-ecules into head-to-tail dimers. These are joined by strong O-H⋯O hydrogen bonds from the water molecules into infinite chains along the a axis.Entities:
Year: 2012 PMID: 22412536 PMCID: PMC3295425 DOI: 10.1107/S1600536812004333
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H14N2O3·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3082 reflections |
| θ = 2.5–27.9° | |
| µ = 0.10 mm−1 | |
| β = 91.646 (1)° | Needle, white |
| 0.19 × 0.09 × 0.07 mm | |
| Bruker Kappa APEXII CCD diffractometer | 2152 reflections with |
| Radiation source: fine-focus sealed tube | |
| Graphite monochromator | θmax = 28.3°, θmin = 1.7° |
| φ and ω scans | |
| 12165 measured reflections | |
| 3128 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3128 reflections | (Δ/σ)max < 0.001 |
| 181 parameters | Δρmax = 0.27 e Å−3 |
| 0 restraints | Δρmin = −0.18 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.6664 (3) | 0.38694 (7) | 0.77501 (14) | 0.0320 (4) | |
| C2 | 0.7843 (3) | 0.42644 (7) | 0.69281 (14) | 0.0309 (4) | |
| C3 | 0.6891 (3) | 0.42666 (7) | 0.57746 (15) | 0.0328 (4) | |
| H3 | 0.7687 | 0.4530 | 0.5274 | 0.039* | |
| C4 | 0.3706 (3) | 0.35103 (7) | 0.60267 (14) | 0.0307 (4) | |
| C5 | 0.4552 (3) | 0.34821 (7) | 0.72122 (14) | 0.0310 (4) | |
| C6 | 0.3282 (4) | 0.30618 (7) | 0.78758 (16) | 0.0381 (4) | |
| H6 | 0.3764 | 0.3023 | 0.8671 | 0.046* | |
| C7 | 0.1332 (4) | 0.27070 (7) | 0.73569 (16) | 0.0398 (4) | |
| H7 | 0.0481 | 0.2426 | 0.7796 | 0.048* | |
| C8 | 0.0627 (3) | 0.27700 (7) | 0.61615 (15) | 0.0349 (4) | |
| C9 | 1.0005 (3) | 0.46984 (7) | 0.72231 (14) | 0.0330 (4) | |
| C10 | 1.2543 (4) | 0.51876 (9) | 0.87123 (18) | 0.0525 (5) | |
| H10A | 1.4364 | 0.5102 | 0.8395 | 0.079* | |
| H10B | 1.2713 | 0.5202 | 0.9556 | 0.079* | |
| H10C | 1.1896 | 0.5546 | 0.8418 | 0.079* | |
| C11 | −0.1477 (4) | 0.23821 (8) | 0.55685 (18) | 0.0448 (4) | |
| H11A | −0.2117 | 0.2543 | 0.4833 | 0.067* | |
| H11B | −0.3074 | 0.2329 | 0.6065 | 0.067* | |
| H11C | −0.0590 | 0.2025 | 0.5428 | 0.067* | |
| C12 | 0.3991 (4) | 0.39784 (8) | 0.40625 (15) | 0.0421 (4) | |
| H12A | 0.4415 | 0.4358 | 0.3801 | 0.051* | |
| H12B | 0.1945 | 0.3926 | 0.3994 | 0.051* | |
| C13 | 0.5409 (5) | 0.35647 (9) | 0.32742 (18) | 0.0560 (6) | |
| H19A | 0.4711 | 0.3616 | 0.2479 | 0.084* | |
| H19B | 0.4995 | 0.3188 | 0.3527 | 0.084* | |
| H19C | 0.7430 | 0.3625 | 0.3311 | 0.084* | |
| N1 | 0.1777 (3) | 0.31671 (6) | 0.55030 (12) | 0.0346 (3) | |
| N2 | 0.4905 (3) | 0.39199 (6) | 0.53125 (12) | 0.0331 (3) | |
| O1 | 0.7306 (3) | 0.38354 (6) | 0.88110 (11) | 0.0449 (4) | |
| O2 | 1.1179 (3) | 0.49770 (6) | 0.64973 (12) | 0.0529 (4) | |
| O3 | 1.0520 (3) | 0.47558 (6) | 0.83641 (11) | 0.0483 (4) | |
| O4 | 0.2506 (4) | 0.38795 (8) | 0.03949 (15) | 0.0678 (5) | |
| H4B | 0.099 (7) | 0.3912 (13) | −0.025 (3) | 0.102* | |
| H4A | 0.394 (7) | 0.3865 (14) | −0.003 (3) | 0.102* |
| C1 | 0.0303 (8) | 0.0350 (9) | 0.0306 (8) | 0.0031 (6) | −0.0017 (6) | 0.0001 (7) |
| C2 | 0.0285 (8) | 0.0320 (8) | 0.0322 (8) | 0.0010 (6) | −0.0005 (6) | −0.0023 (7) |
| C3 | 0.0334 (8) | 0.0311 (8) | 0.0339 (9) | −0.0009 (6) | 0.0000 (6) | 0.0004 (7) |
| C4 | 0.0294 (8) | 0.0304 (8) | 0.0321 (8) | 0.0033 (6) | −0.0007 (6) | −0.0006 (6) |
| C5 | 0.0301 (8) | 0.0305 (8) | 0.0324 (8) | 0.0020 (6) | 0.0002 (6) | 0.0006 (7) |
| C6 | 0.0403 (9) | 0.0399 (10) | 0.0341 (9) | −0.0007 (7) | 0.0005 (7) | 0.0025 (7) |
| C7 | 0.0406 (9) | 0.0368 (9) | 0.0421 (10) | −0.0045 (7) | 0.0036 (7) | 0.0030 (8) |
| C8 | 0.0291 (8) | 0.0325 (8) | 0.0433 (9) | 0.0011 (6) | 0.0029 (7) | −0.0062 (7) |
| C9 | 0.0301 (8) | 0.0349 (9) | 0.0338 (9) | 0.0015 (7) | −0.0019 (6) | −0.0006 (7) |
| C10 | 0.0581 (12) | 0.0563 (12) | 0.0427 (11) | −0.0220 (10) | −0.0066 (9) | −0.0083 (9) |
| C11 | 0.0428 (10) | 0.0412 (10) | 0.0505 (11) | −0.0069 (8) | 0.0010 (8) | −0.0079 (8) |
| C12 | 0.0480 (10) | 0.0434 (10) | 0.0342 (9) | −0.0084 (8) | −0.0126 (8) | 0.0078 (8) |
| C13 | 0.0709 (14) | 0.0609 (13) | 0.0361 (10) | −0.0118 (11) | −0.0036 (9) | −0.0068 (9) |
| N1 | 0.0317 (7) | 0.0341 (7) | 0.0377 (8) | −0.0003 (6) | −0.0017 (6) | −0.0028 (6) |
| N2 | 0.0348 (7) | 0.0347 (8) | 0.0296 (7) | −0.0011 (6) | −0.0041 (5) | 0.0011 (6) |
| O1 | 0.0472 (7) | 0.0558 (8) | 0.0313 (7) | −0.0130 (6) | −0.0069 (5) | 0.0055 (6) |
| O2 | 0.0583 (8) | 0.0615 (9) | 0.0388 (7) | −0.0266 (7) | −0.0020 (6) | 0.0047 (6) |
| O3 | 0.0571 (8) | 0.0544 (8) | 0.0331 (7) | −0.0227 (6) | −0.0046 (6) | −0.0034 (6) |
| O4 | 0.0642 (10) | 0.0912 (13) | 0.0477 (9) | −0.0087 (9) | −0.0003 (8) | 0.0004 (8) |
| C1—O1 | 1.237 (2) | C9—O3 | 1.319 (2) |
| C1—C2 | 1.445 (2) | C10—O3 | 1.445 (2) |
| C1—C5 | 1.472 (2) | C10—H10A | 0.9600 |
| C2—C3 | 1.373 (2) | C10—H10B | 0.9600 |
| C2—C9 | 1.478 (2) | C10—H10C | 0.9600 |
| C3—N2 | 1.340 (2) | C11—H11A | 0.9600 |
| C3—H3 | 0.9300 | C11—H11B | 0.9600 |
| C4—N1 | 1.344 (2) | C11—H11C | 0.9600 |
| C4—N2 | 1.395 (2) | C12—N2 | 1.479 (2) |
| C4—C5 | 1.395 (2) | C12—C13 | 1.498 (3) |
| C5—C6 | 1.395 (2) | C12—H12A | 0.9700 |
| C6—C7 | 1.366 (2) | C12—H12B | 0.9700 |
| C6—H6 | 0.9300 | C13—H19A | 0.9600 |
| C7—C8 | 1.397 (2) | C13—H19B | 0.9600 |
| C7—H7 | 0.9300 | C13—H19C | 0.9600 |
| C8—N1 | 1.328 (2) | O4—H4B | 1.01 (4) |
| C8—C11 | 1.497 (2) | O4—H4A | 0.84 (3) |
| C9—O2 | 1.203 (2) | ||
| O1—C1—C2 | 125.82 (15) | H10A—C10—H10B | 109.5 |
| O1—C1—C5 | 120.43 (15) | O3—C10—H10C | 109.5 |
| C2—C1—C5 | 113.75 (14) | H10A—C10—H10C | 109.5 |
| C3—C2—C1 | 119.95 (14) | H10B—C10—H10C | 109.5 |
| C3—C2—C9 | 114.64 (14) | C8—C11—H11A | 109.5 |
| C1—C2—C9 | 125.38 (14) | C8—C11—H11B | 109.5 |
| N2—C3—C2 | 125.18 (15) | H11A—C11—H11B | 109.5 |
| N2—C3—H3 | 117.4 | C8—C11—H11C | 109.5 |
| C2—C3—H3 | 117.4 | H11A—C11—H11C | 109.5 |
| N1—C4—N2 | 116.27 (14) | H11B—C11—H11C | 109.5 |
| N1—C4—C5 | 124.62 (15) | N2—C12—C13 | 113.02 (16) |
| N2—C4—C5 | 119.10 (14) | N2—C12—H12A | 109.0 |
| C6—C5—C4 | 116.23 (15) | C13—C12—H12A | 109.0 |
| C6—C5—C1 | 121.03 (15) | N2—C12—H12B | 109.0 |
| C4—C5—C1 | 122.75 (14) | C13—C12—H12B | 109.0 |
| C7—C6—C5 | 119.97 (16) | H12A—C12—H12B | 107.8 |
| C7—C6—H6 | 120.0 | C12—C13—H19A | 109.5 |
| C5—C6—H6 | 120.0 | C12—C13—H19B | 109.5 |
| C6—C7—C8 | 119.43 (16) | H19A—C13—H19B | 109.5 |
| C6—C7—H7 | 120.3 | C12—C13—H19C | 109.5 |
| C8—C7—H7 | 120.3 | H19A—C13—H19C | 109.5 |
| N1—C8—C7 | 122.34 (15) | H19B—C13—H19C | 109.5 |
| N1—C8—C11 | 117.19 (16) | C8—N1—C4 | 117.42 (14) |
| C7—C8—C11 | 120.48 (16) | C3—N2—C4 | 119.21 (14) |
| O2—C9—O3 | 122.85 (15) | C3—N2—C12 | 119.92 (14) |
| O2—C9—C2 | 123.56 (15) | C4—N2—C12 | 120.87 (13) |
| O3—C9—C2 | 113.58 (14) | C9—O3—C10 | 116.29 (14) |
| O3—C10—H10A | 109.5 | H4B—O4—H4A | 99 (3) |
| O3—C10—H10B | 109.5 | ||
| O1—C1—C2—C3 | −178.42 (16) | C3—C2—C9—O2 | −10.8 (2) |
| C5—C1—C2—C3 | 2.3 (2) | C1—C2—C9—O2 | 171.14 (17) |
| O1—C1—C2—C9 | −0.5 (3) | C3—C2—C9—O3 | 168.67 (15) |
| C5—C1—C2—C9 | −179.75 (14) | C1—C2—C9—O3 | −9.3 (2) |
| C1—C2—C3—N2 | −0.6 (2) | C7—C8—N1—C4 | 0.8 (2) |
| C9—C2—C3—N2 | −178.77 (15) | C11—C8—N1—C4 | −178.85 (14) |
| N1—C4—C5—C6 | 0.4 (2) | N2—C4—N1—C8 | 179.33 (14) |
| N2—C4—C5—C6 | −179.72 (14) | C5—C4—N1—C8 | −0.8 (2) |
| N1—C4—C5—C1 | −179.66 (14) | C2—C3—N2—C4 | −1.5 (2) |
| N2—C4—C5—C1 | 0.2 (2) | C2—C3—N2—C12 | 177.86 (16) |
| O1—C1—C5—C6 | −1.5 (2) | N1—C4—N2—C3 | −178.45 (14) |
| C2—C1—C5—C6 | 177.77 (14) | C5—C4—N2—C3 | 1.7 (2) |
| O1—C1—C5—C4 | 178.56 (15) | N1—C4—N2—C12 | 2.2 (2) |
| C2—C1—C5—C4 | −2.1 (2) | C5—C4—N2—C12 | −177.68 (15) |
| C4—C5—C6—C7 | 0.0 (2) | C13—C12—N2—C3 | 99.01 (19) |
| C1—C5—C6—C7 | −179.89 (16) | C13—C12—N2—C4 | −81.6 (2) |
| C5—C6—C7—C8 | 0.0 (3) | O2—C9—O3—C10 | 1.6 (3) |
| C6—C7—C8—N1 | −0.4 (3) | C2—C9—O3—C10 | −177.90 (15) |
| C6—C7—C8—C11 | 179.24 (16) |
| H··· | ||||
| O4—H4 | 1.01 (4) | 2.02 (4) | 2.994 (2) | 163 (3) |
| O4—H4 | 0.84 (3) | 2.09 (3) | 2.928 (2) | 176 (3) |
| O4—H4 | 1.01 (4) | 2.56 (3) | 3.224 (2) | 124 (2) |
| C3—H3···O2iii | 0.93 | 2.40 | 3.293 (2) | 160 |
| C11—H11 | 0.96 | 2.59 | 3.539 (3) | 168 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O4—H4 | 1.01 (4) | 2.02 (4) | 2.994 (2) | 163 (3) |
| O4—H4 | 0.84 (3) | 2.09 (3) | 2.928 (2) | 176 (3) |
| O4—H4 | 1.01 (4) | 2.56 (3) | 3.224 (2) | 124 (2) |
| C3—H3⋯O2iii | 0.93 | 2.40 | 3.293 (2) | 160 |
| C11—H11 | 0.96 | 2.59 | 3.539 (3) | 168 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .