Literature DB >> 21578871

N'-[(E)-Benzyl-idene]-1-ethyl-7-methyl-4-oxo-1,4-dihydro-1,8-naphthyridine-3-carbohydrazide.

Farah Deeba, Misbahul Ain Khan, Muhammad Zia-Ur-Rehman, Ertan Sahin, Nagihan Caylak.   

Abstract

In the title compound, C(19)H(18)N(4)O(2), the 1,8-naphthyridine ring system is essentially planar [r.m.s. deviation = 0.011 (3) Å]. The dihedral angle between the naphthyridine ring system and the phenyl ring is 28.95 (7)°. The carbohydrazide H atom is involved in an intra-molecular N-H⋯O hydrogen bond, forming a six-membered hydrogen-bonded ring. In the crystal, the mol-ecules arrange themselves into centrosymmetric dimers by means of inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21578871      PMCID: PMC2972033          DOI: 10.1107/S1600536809048739

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of heterocyclic compounds, see: Chen et al. (2001 ▶); Zia-ur-Rehman et al. (2006 ▶, 2009 ▶). For their biological activity, see: Ferrarini et al. (2000 ▶); Hoock et al. (1999 ▶); Nakatani et al. (2001 ▶); Roma et al. (2000 ▶). For related structures, see: Catalano et al. (2000 ▶); Deeba et al. (2009 ▶).

Experimental

Crystal data

C19H18N4O2 M = 334.37 Triclinic, a = 7.1642 (1) Å b = 8.8383 (1) Å c = 14.4560 (2) Å α = 82.624 (6)° β = 85.454 (7)° γ = 68.594 (5)° V = 844.63 (4) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.20 × 0.10 × 0.10 mm

Data collection

Rigaku R-AXIS RAPID-S diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.983, T max = 0.991 18153 measured reflections 3446 independent reflections 2105 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.175 S = 1.03 3446 reflections 236 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809048739/is2485sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809048739/is2485Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H18N4O2Z = 2
Mr = 334.37F(000) = 352
Triclinic, P1Dx = 1.315 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.1642 (1) ÅCell parameters from 18153 reflections
b = 8.8383 (1) Åθ = 2.5–26.4°
c = 14.4560 (2) ŵ = 0.09 mm1
α = 82.624 (6)°T = 293 K
β = 85.454 (7)°Needles, yellow
γ = 68.594 (5)°0.20 × 0.10 × 0.10 mm
V = 844.63 (4) Å3
Rigaku R-AXIS RAPID-S diffractometer3446 independent reflections
Radiation source: fine-focus sealed tube2105 reflections with I > 2σ(I)
graphiteRint = 0.066
ω scansθmax = 26.4°, θmin = 2.5°
Absorption correction: multi-scan (Blessing, 1995)h = −8→8
Tmin = 0.983, Tmax = 0.991k = −11→11
18153 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.175H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0691P)2 + 0.1621P] where P = (Fo2 + 2Fc2)/3
3446 reflections(Δ/σ)max < 0.001
236 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.1188 (4)0.2780 (3)0.28444 (16)0.0632 (7)
H1C−0.10270.18710.33120.095*
H1A−0.25880.33490.27340.095*
H1B−0.06370.35110.30560.095*
C80.3626 (5)−0.3046 (4)0.26006 (19)0.0813 (9)
H8A0.4932−0.34720.23040.122*
H8C0.3494−0.38180.31090.122*
H8B0.3459−0.20340.28340.122*
H130.603 (4)−0.009 (3)−0.3488 (17)0.072 (8)*
H1N0.454 (4)−0.035 (3)−0.2036 (17)0.065 (8)*
C50.1821 (3)0.1032 (3)0.03208 (15)0.0469 (5)
O10.3049 (3)0.1303 (2)−0.12329 (11)0.0627 (5)
N40.0597 (3)0.0569 (2)0.19056 (12)0.0476 (5)
N30.2269 (3)−0.1657 (2)0.10789 (12)0.0466 (5)
N10.4915 (3)−0.1421 (3)−0.20600 (13)0.0546 (5)
C100.3530 (3)−0.1374 (3)−0.04983 (14)0.0468 (5)
C90.3224 (3)−0.2282 (3)0.03032 (15)0.0477 (5)
H90.3716−0.34130.03080.057*
N20.5729 (3)−0.2165 (3)−0.28556 (13)0.0574 (5)
C110.2838 (3)0.0374 (3)−0.05407 (15)0.0480 (5)
C60.1544 (3)0.0025 (3)0.11057 (14)0.0444 (5)
O20.5063 (3)−0.3819 (2)−0.12262 (11)0.0682 (5)
C2−0.0111 (3)0.2171 (3)0.19557 (16)0.0510 (6)
C30.0108 (4)0.3277 (3)0.12111 (17)0.0631 (7)
H3−0.03950.43930.12660.076*
C130.6167 (4)−0.1254 (4)−0.35312 (17)0.0580 (6)
C70.2050 (4)−0.2758 (3)0.19052 (15)0.0564 (7)
H7B0.2152−0.37950.17090.068*
H7A0.0733−0.22810.21990.068*
C140.6940 (4)−0.1896 (3)−0.44275 (15)0.0549 (6)
C40.1069 (4)0.2702 (3)0.04011 (17)0.0594 (7)
H40.12210.3431−0.00970.071*
C120.4574 (4)−0.2336 (3)−0.12865 (15)0.0522 (6)
C150.7825 (4)−0.1063 (3)−0.50867 (17)0.0681 (7)
H150.7952−0.0104−0.49530.082*
C190.6743 (5)−0.3296 (4)−0.46494 (18)0.0778 (9)
H190.6135−0.3863−0.42190.093*
C170.8318 (5)−0.3036 (4)−0.6144 (2)0.0901 (10)
H170.8780−0.3421−0.67200.108*
C160.8518 (5)−0.1637 (4)−0.59383 (19)0.0807 (9)
H160.9123−0.1073−0.63730.097*
C180.7436 (6)−0.3872 (4)−0.5502 (2)0.0992 (12)
H180.7305−0.4826−0.56400.119*
U11U22U33U12U13U23
C10.0648 (16)0.0627 (16)0.0549 (15)−0.0110 (13)0.0065 (12)−0.0216 (12)
C80.108 (2)0.0676 (18)0.0590 (16)−0.0244 (17)−0.0082 (16)0.0081 (14)
C50.0490 (13)0.0456 (12)0.0439 (12)−0.0144 (10)0.0011 (10)−0.0061 (10)
O10.0816 (13)0.0578 (10)0.0443 (9)−0.0239 (9)0.0122 (8)−0.0018 (8)
N40.0495 (11)0.0484 (11)0.0412 (10)−0.0126 (9)0.0058 (8)−0.0109 (8)
N30.0524 (11)0.0450 (10)0.0398 (10)−0.0149 (9)0.0093 (8)−0.0096 (8)
N10.0641 (13)0.0592 (13)0.0389 (11)−0.0206 (11)0.0121 (9)−0.0124 (9)
C100.0482 (13)0.0518 (13)0.0381 (11)−0.0155 (10)0.0046 (10)−0.0082 (10)
C90.0492 (13)0.0460 (12)0.0448 (12)−0.0133 (10)0.0070 (10)−0.0111 (10)
N20.0586 (13)0.0661 (13)0.0432 (11)−0.0171 (10)0.0096 (9)−0.0136 (9)
C110.0504 (13)0.0540 (13)0.0392 (11)−0.0192 (11)0.0038 (10)−0.0063 (10)
C60.0421 (12)0.0461 (12)0.0408 (11)−0.0112 (10)0.0033 (9)−0.0070 (9)
O20.0869 (13)0.0542 (11)0.0533 (10)−0.0148 (9)0.0182 (9)−0.0144 (8)
C20.0487 (13)0.0503 (13)0.0493 (13)−0.0099 (11)0.0003 (10)−0.0133 (11)
C30.0777 (18)0.0438 (13)0.0589 (15)−0.0108 (13)0.0029 (13)−0.0105 (11)
C130.0620 (16)0.0665 (17)0.0463 (14)−0.0239 (13)0.0064 (11)−0.0119 (12)
C70.0746 (17)0.0453 (13)0.0436 (12)−0.0187 (12)0.0179 (12)−0.0054 (10)
C140.0554 (15)0.0638 (15)0.0403 (12)−0.0161 (12)0.0055 (10)−0.0076 (11)
C40.0732 (17)0.0480 (14)0.0499 (14)−0.0157 (12)0.0022 (12)−0.0011 (11)
C120.0525 (14)0.0578 (15)0.0435 (13)−0.0162 (12)0.0070 (10)−0.0111 (11)
C150.0797 (19)0.0685 (17)0.0563 (15)−0.0290 (15)0.0143 (13)−0.0099 (13)
C190.110 (2)0.0807 (19)0.0517 (15)−0.0485 (18)0.0251 (15)−0.0146 (14)
C170.125 (3)0.095 (2)0.0570 (17)−0.048 (2)0.0380 (17)−0.0298 (16)
C160.095 (2)0.089 (2)0.0568 (16)−0.0363 (18)0.0282 (15)−0.0125 (15)
C180.154 (3)0.095 (2)0.0663 (19)−0.066 (2)0.038 (2)−0.0343 (17)
C1—C21.501 (3)C9—H90.9300
C1—H1C0.9600N2—C131.279 (3)
C1—H1A0.9600O2—C121.220 (3)
C1—H1B0.9600C2—C31.397 (3)
C8—C71.501 (4)C3—C41.369 (3)
C8—H8A0.9600C3—H30.9300
C8—H8C0.9600C13—C141.467 (3)
C8—H8B0.9600C13—H131.01 (3)
C5—C41.391 (3)C7—H7B0.9700
C5—C61.398 (3)C7—H7A0.9700
C5—C111.467 (3)C14—C191.375 (4)
O1—C111.246 (3)C14—C151.384 (3)
N4—C21.328 (3)C4—H40.9300
N4—C61.345 (3)C15—C161.378 (3)
N3—C91.339 (3)C15—H150.9300
N3—C61.388 (3)C19—C181.379 (4)
N3—C71.477 (3)C19—H190.9300
N1—C121.354 (3)C17—C161.367 (4)
N1—N21.379 (3)C17—C181.370 (4)
N1—H1N0.89 (3)C17—H170.9300
C10—C91.373 (3)C16—H160.9300
C10—C111.435 (3)C18—H180.9300
C10—C121.494 (3)
C2—C1—H1C109.5C3—C2—C1120.2 (2)
C2—C1—H1A109.5C4—C3—C2119.4 (2)
H1C—C1—H1A109.5C4—C3—H3120.3
C2—C1—H1B109.5C2—C3—H3120.3
H1C—C1—H1B109.5N2—C13—C14120.2 (2)
H1A—C1—H1B109.5N2—C13—H13123.6 (14)
C7—C8—H8A109.5C14—C13—H13116.3 (14)
C7—C8—H8C109.5N3—C7—C8111.6 (2)
H8A—C8—H8C109.5N3—C7—H7B109.3
C7—C8—H8B109.5C8—C7—H7B109.3
H8A—C8—H8B109.5N3—C7—H7A109.3
H8C—C8—H8B109.5C8—C7—H7A109.3
C4—C5—C6116.1 (2)H7B—C7—H7A108.0
C4—C5—C11121.7 (2)C19—C14—C15118.3 (2)
C6—C5—C11122.2 (2)C19—C14—C13121.3 (2)
C2—N4—C6117.81 (19)C15—C14—C13120.3 (2)
C9—N3—C6119.42 (18)C3—C4—C5120.2 (2)
C9—N3—C7119.91 (18)C3—C4—H4119.9
C6—N3—C7120.65 (17)C5—C4—H4119.9
C12—N1—N2119.2 (2)O2—C12—N1123.7 (2)
C12—N1—H1N117.7 (16)O2—C12—C10122.0 (2)
N2—N1—H1N123.0 (16)N1—C12—C10114.2 (2)
C9—C10—C11120.18 (19)C16—C15—C14120.8 (3)
C9—C10—C12115.2 (2)C16—C15—H15119.6
C11—C10—C12124.6 (2)C14—C15—H15119.6
N3—C9—C10124.7 (2)C14—C19—C18120.9 (3)
N3—C9—H9117.7C14—C19—H19119.5
C10—C9—H9117.7C18—C19—H19119.5
C13—N2—N1115.6 (2)C16—C17—C18120.0 (3)
O1—C11—C10125.0 (2)C16—C17—H17120.0
O1—C11—C5120.8 (2)C18—C17—H17120.0
C10—C11—C5114.23 (19)C17—C16—C15120.0 (3)
N4—C6—N3116.26 (19)C17—C16—H16120.0
N4—C6—C5124.4 (2)C15—C16—H16120.0
N3—C6—C5119.32 (18)C17—C18—C19120.0 (3)
N4—C2—C3122.0 (2)C17—C18—H18120.0
N4—C2—C1117.8 (2)C19—C18—H18120.0
C6—N3—C9—C10−1.1 (3)N4—C2—C3—C40.3 (4)
C7—N3—C9—C10−179.3 (2)C1—C2—C3—C4−179.1 (2)
C11—C10—C9—N31.2 (4)N1—N2—C13—C14−176.7 (2)
C12—C10—C9—N3−178.0 (2)C9—N3—C7—C897.7 (3)
C12—N1—N2—C13−174.3 (2)C6—N3—C7—C8−80.4 (3)
C9—C10—C11—O1179.8 (2)N2—C13—C14—C1916.6 (4)
C12—C10—C11—O1−1.2 (4)N2—C13—C14—C15−165.8 (2)
C9—C10—C11—C5−0.3 (3)C2—C3—C4—C50.0 (4)
C12—C10—C11—C5178.8 (2)C6—C5—C4—C3−0.5 (4)
C4—C5—C11—O1−0.4 (4)C11—C5—C4—C3179.3 (2)
C6—C5—C11—O1179.4 (2)N2—N1—C12—O24.9 (4)
C4—C5—C11—C10179.6 (2)N2—N1—C12—C10−174.99 (19)
C6—C5—C11—C10−0.6 (3)C9—C10—C12—O22.0 (4)
C2—N4—C6—N3179.8 (2)C11—C10—C12—O2−177.1 (2)
C2—N4—C6—C5−0.5 (3)C9—C10—C12—N1−178.1 (2)
C9—N3—C6—N4179.85 (19)C11—C10—C12—N12.8 (3)
C7—N3—C6—N4−2.0 (3)C19—C14—C15—C16−1.0 (4)
C9—N3—C6—C50.1 (3)C13—C14—C15—C16−178.7 (3)
C7—N3—C6—C5178.3 (2)C15—C14—C19—C180.9 (5)
C4—C5—C6—N40.8 (3)C13—C14—C19—C18178.6 (3)
C11—C5—C6—N4−179.0 (2)C18—C17—C16—C15−0.3 (5)
C4—C5—C6—N3−179.5 (2)C14—C15—C16—C170.7 (5)
C11—C5—C6—N30.7 (3)C16—C17—C18—C190.3 (6)
C6—N4—C2—C3−0.1 (3)C14—C19—C18—C17−0.6 (6)
C6—N4—C2—C1179.3 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O10.89 (3)1.93 (2)2.674 (3)140 (2)
C7—H7B···O2i0.972.453.204 (3)134
C9—H9···O2i0.932.513.340 (3)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯O10.89 (3)1.93 (2)2.674 (3)140 (2)
C7—H7B⋯O2i 0.972.453.204 (3)134
C9—H9⋯O2i 0.932.513.340 (3)149

Symmetry code: (i) .

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