Literature DB >> 22412415

Redetermination of catena-poly[[chlorido-(thio-urea-κS)copper(I)]-μ-thio-urea-κS:S] at 100 K.

Hafid Zouihri1.   

Abstract

The structure of the polymeric title compound, [CuCl(CH(4)N(2)S)(2)](n), has been redetermined to modern standards of precision with anisotropic refinement and location of the H atoms. The previous structure report [Spofford & Amma (1970 ▶). Acta Cryst. B26, 1474-1483] is generally confirmed to higher precision [typical Cu-S bond length s.u. values = 0.005 (old) and 0.001 Å (new)]. The asymmetric unit contains two formula units, with both Cu(I) atoms coordinated by one terminal S atom and two bridging S atoms of thio-urea ligands. This connectivity leads to polymeric [100] chains in the crystal. If very long contacts to nearby chloride ions [2.8687 (9) and 3.1394 (12) Å] are considered to be bonding, then very distorted CuS(3)Cl tetra-hedral coordination polyhedra arise. The crystal structure is consolidated by weak intra- and inter-chain N-H⋯S and N-H⋯Cl hydrogen bonds.

Entities:  

Year:  2012        PMID: 22412415      PMCID: PMC3297225          DOI: 10.1107/S1600536812004448

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of a related thio­urea salt, see: Zouihri (2012 ▶). For the previous structure determination of the title compound, see: Spofford & Amma (1970 ▶).

Experimental

Crystal data

[CuCl(CH4N2S)2] M = 251.24 Monoclinic, a = 5.8043 (2) Å b = 8.1292 (3) Å c = 35.9657 (12) Å β = 92.326 (2)° V = 1695.62 (10) Å3 Z = 8 Mo Kα radiation μ = 3.32 mm−1 T = 100 K 0.45 × 0.18 × 0.07 mm

Data collection

Bruker APEXII CCD detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.493, T max = 0.793 18106 measured reflections 4089 independent reflections 3372 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.081 S = 1.15 4089 reflections 245 parameters 16 restraints All H-atom parameters refined Δρmax = 0.58 e Å−3 Δρmin = −0.85 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812004448/hb6598sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004448/hb6598Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CuCl(CH4N2S)2]F(000) = 1008
Mr = 251.24Dx = 1.968 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 368 reflections
a = 5.8043 (2) Åθ = 1.7–27.2°
b = 8.1292 (3) ŵ = 3.32 mm1
c = 35.9657 (12) ÅT = 100 K
β = 92.326 (2)°Prism, colourless
V = 1695.62 (10) Å30.45 × 0.18 × 0.07 mm
Z = 8
Bruker APEXII CCD detector diffractometer4089 independent reflections
Radiation source: fine-focus sealed tube3372 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.040
ω and φ scansθmax = 28.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −7→7
Tmin = 0.493, Tmax = 0.793k = −10→10
18106 measured reflectionsl = −47→33
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081All H-atom parameters refined
S = 1.15w = 1/[σ2(Fo2) + (0.0226P)2 + 3.6977P] where P = (Fo2 + 2Fc2)/3
4089 reflections(Δ/σ)max = 0.001
245 parametersΔρmax = 0.58 e Å3
16 restraintsΔρmin = −0.85 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.20578 (8)0.31958 (6)0.100266 (15)0.02808 (13)
Cu2−0.13231 (8)0.24956 (6)0.157138 (12)0.02293 (12)
Cl1−0.45164 (14)0.01524 (10)0.18514 (2)0.01749 (17)
Cl20.35733 (14)0.18063 (12)0.02357 (3)0.0253 (2)
S30.05347 (13)0.07669 (10)0.11866 (2)0.01369 (17)
S40.06418 (14)0.35188 (12)0.20688 (3)0.0207 (2)
S20.02223 (14)0.52774 (12)0.06966 (3)0.01974 (19)
S10.55003 (14)0.38438 (11)0.13126 (3)0.01895 (19)
C4−0.1303 (6)0.3857 (4)0.24079 (10)0.0203 (8)
C3−0.1615 (5)0.0262 (4)0.08459 (9)0.0148 (7)
C10.5411 (6)0.5852 (4)0.14784 (10)0.0183 (7)
C20.2234 (6)0.6102 (4)0.04098 (10)0.0179 (7)
N30.4489 (5)0.5983 (5)0.04812 (10)0.0268 (8)
N10.7193 (6)0.6469 (4)0.16698 (10)0.0277 (8)
N7−0.3535 (5)0.3549 (5)0.23575 (10)0.0298 (8)
N20.3566 (5)0.6769 (4)0.14099 (9)0.0224 (7)
N40.1543 (5)0.6897 (5)0.01073 (9)0.0259 (7)
N6−0.3721 (5)−0.0059 (4)0.09504 (9)0.0227 (7)
N5−0.1090 (5)0.0156 (4)0.04974 (8)0.0218 (7)
N8−0.0560 (6)0.4419 (5)0.27368 (10)0.0295 (8)
H5A0.026 (4)0.043 (5)0.0426 (12)0.037 (13)*
H6A−0.482 (6)−0.015 (6)0.0781 (11)0.049 (15)*
H7A−0.398 (7)0.304 (5)0.2160 (8)0.034 (13)*
H8A−0.148 (6)0.478 (6)0.2898 (10)0.040 (14)*
H3A0.500 (7)0.538 (4)0.0666 (8)0.023 (11)*
H4A0.258 (5)0.731 (5)−0.0024 (10)0.024 (11)*
H5B−0.207 (6)−0.017 (5)0.0328 (9)0.028 (11)*
H6B−0.401 (7)0.005 (5)0.1181 (6)0.027 (12)*
H7B−0.443 (7)0.391 (6)0.2526 (10)0.043 (14)*
H8B0.082 (4)0.477 (6)0.2753 (14)0.048 (15)*
H2B0.358 (7)0.775 (3)0.1496 (11)0.025 (12)*
H1B0.817 (6)0.573 (4)0.1748 (11)0.025 (11)*
H4B0.016 (4)0.692 (5)0.0030 (12)0.030 (12)*
H3B0.537 (7)0.639 (6)0.0320 (10)0.041 (14)*
H2A0.249 (5)0.639 (5)0.1260 (9)0.026 (11)*
H1A0.715 (8)0.743 (3)0.1764 (13)0.044 (14)*
U11U22U33U12U13U23
Cu10.0184 (2)0.0208 (2)0.0442 (3)−0.00450 (19)−0.0103 (2)0.0088 (2)
Cu20.0198 (2)0.0286 (3)0.0199 (2)0.00834 (19)−0.00549 (18)−0.0093 (2)
Cl10.0177 (4)0.0183 (4)0.0164 (4)0.0011 (3)0.0005 (3)−0.0003 (3)
Cl20.0123 (4)0.0327 (5)0.0309 (5)−0.0007 (4)0.0013 (3)0.0069 (4)
S30.0108 (3)0.0163 (4)0.0139 (4)0.0007 (3)−0.0005 (3)−0.0006 (3)
S40.0119 (4)0.0297 (5)0.0202 (4)0.0024 (3)−0.0022 (3)−0.0077 (4)
S20.0102 (4)0.0267 (5)0.0223 (5)0.0015 (3)0.0006 (3)0.0057 (4)
S10.0160 (4)0.0135 (4)0.0266 (5)0.0012 (3)−0.0077 (4)−0.0010 (3)
C40.0162 (16)0.0191 (18)0.0251 (19)0.0030 (14)−0.0043 (14)−0.0062 (15)
C30.0121 (15)0.0167 (17)0.0156 (17)−0.0031 (13)−0.0002 (13)−0.0031 (13)
C10.0169 (16)0.0179 (18)0.0200 (18)−0.0008 (14)0.0007 (14)0.0027 (14)
C20.0138 (15)0.0233 (19)0.0166 (17)0.0016 (14)−0.0019 (13)−0.0019 (14)
N30.0121 (14)0.042 (2)0.0262 (19)−0.0001 (14)0.0008 (13)0.0125 (16)
N10.0277 (17)0.0149 (17)0.039 (2)0.0035 (14)−0.0143 (15)−0.0072 (15)
N70.0121 (14)0.051 (2)0.0263 (19)−0.0026 (15)0.0018 (14)−0.0180 (17)
N20.0181 (15)0.0173 (16)0.0314 (18)0.0034 (13)−0.0036 (13)−0.0054 (15)
N40.0114 (14)0.041 (2)0.0249 (18)−0.0017 (14)−0.0019 (13)0.0098 (15)
N60.0153 (14)0.0362 (19)0.0166 (16)−0.0091 (14)0.0006 (13)−0.0030 (15)
N50.0152 (15)0.0377 (19)0.0123 (15)−0.0063 (14)−0.0001 (12)−0.0044 (13)
N80.0185 (16)0.046 (2)0.0237 (18)−0.0033 (16)−0.0016 (14)−0.0193 (16)
Cu1—S12.3091 (9)C1—N21.320 (4)
Cu1—S22.2617 (10)C2—N41.314 (5)
Cu1—S32.2728 (10)C2—N31.327 (4)
Cu1—Cl23.1394 (12)N3—H3A0.867 (19)
Cu2—S1i2.3081 (9)N3—H3B0.853 (19)
Cu2—S32.2747 (9)N1—H1B0.862 (19)
Cu2—S42.2421 (9)N1—H1A0.855 (19)
Cu2—Cl12.8687 (9)N7—H7A0.854 (19)
Cu1—Cu22.9470 (7)N7—H7B0.867 (19)
S3—C31.761 (3)N2—H2B0.852 (19)
S4—C41.717 (4)N2—H2A0.867 (19)
S2—C21.725 (4)N4—H4A0.852 (19)
S1—C11.739 (4)N4—H4B0.837 (19)
S1—Cu2ii2.3081 (9)N6—H6A0.866 (19)
C4—N81.324 (5)N6—H6B0.857 (19)
C4—N71.325 (4)N5—H5A0.862 (19)
C3—N51.305 (4)N5—H5B0.856 (19)
C3—N61.320 (4)N8—H8A0.856 (19)
C1—N11.319 (5)N8—H8B0.852 (19)
Cl2—Cu1—S1103.79 (3)N5—C3—S3119.8 (2)
Cl2—Cu1—S289.13 (4)N6—C3—S3119.1 (3)
Cl2—Cu1—S393.98 (3)N1—C1—N2119.7 (3)
S1—Cu1—S2116.46 (4)N1—C1—S1120.1 (3)
S1—Cu1—S3113.38 (4)N2—C1—S1120.1 (3)
S2—Cu1—S3127.63 (4)N4—C2—N3117.5 (3)
Cl1—Cu2—S397.61 (3)N4—C2—S2119.7 (3)
Cl1—Cu2—S4106.33 (3)N3—C2—S2122.8 (3)
Cl1—Cu2—S1i86.56 (3)C2—N3—H3A120 (3)
S2—Cu1—S3127.63 (4)C2—N3—H3B117 (3)
S2—Cu1—S1116.46 (4)H3A—N3—H3B123 (4)
S3—Cu1—S1113.38 (4)C1—N1—H1B113 (3)
S2—Cu1—Cu299.70 (3)C1—N1—H1A122 (3)
S3—Cu1—Cu249.63 (2)H1B—N1—H1A122 (4)
S1—Cu1—Cu2107.25 (3)C4—N7—H7A118 (3)
S4—Cu2—S3118.44 (3)C4—N7—H7B117 (3)
S4—Cu2—S1i121.18 (4)H7A—N7—H7B125 (4)
S3—Cu2—S1i116.02 (4)C1—N2—H2B118 (3)
S4—Cu2—Cu198.66 (3)C1—N2—H2A118 (3)
S3—Cu2—Cu149.58 (3)H2B—N2—H2A124 (4)
S1i—Cu2—Cu199.90 (3)C2—N4—H4A117 (3)
C3—S3—Cu1105.83 (12)C2—N4—H4B123 (3)
C3—S3—Cu2103.14 (11)H4A—N4—H4B120 (4)
Cu1—S3—Cu280.79 (3)C3—N6—H6A119 (3)
C4—S4—Cu2107.36 (12)C3—N6—H6B118 (3)
C2—S2—Cu1105.36 (12)H6A—N6—H6B122 (4)
C1—S1—Cu2ii110.00 (12)C3—N5—H5A121 (3)
C1—S1—Cu1110.01 (12)C3—N5—H5B122 (3)
Cu2ii—S1—Cu1138.40 (4)H5A—N5—H5B117 (4)
N8—C4—N7117.9 (4)C4—N8—H8A122 (3)
N8—C4—S4119.4 (3)C4—N8—H8B117 (3)
N7—C4—S4122.7 (3)H8A—N8—H8B117 (5)
N5—C3—N6121.0 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cl1iii0.85 (3)2.44 (3)3.230 (3)154 (4)
N1—H1B···S4ii0.87 (3)2.55 (3)3.404 (4)171 (3)
N2—H2A···S20.87 (3)2.54 (3)3.379 (3)164 (3)
N2—H2B···Cl1iii0.86 (3)2.56 (3)3.344 (3)153 (3)
N3—H3A···S10.87 (3)2.65 (3)3.488 (4)164 (3)
N3—H3B···Cl2iv0.86 (4)2.57 (4)3.373 (4)156 (4)
N4—H4A···Cl2iv0.85 (3)2.49 (3)3.309 (3)161 (3)
N4—H4B···Cl2v0.84 (3)2.55 (3)3.340 (3)157 (4)
N5—H5A···Cl20.86 (3)2.35 (3)3.197 (3)167 (4)
N5—H5B···Cl2vi0.86 (3)2.55 (4)3.356 (3)157 (3)
N6—H6A···Cl2i0.87 (4)2.66 (4)3.323 (3)134 (4)
N6—H6B···Cl10.86 (2)2.44 (2)3.296 (3)174 (3)
N7—H7A···Cl10.85 (3)2.61 (4)3.343 (4)145 (3)
N7—H7B···Cl1vii0.87 (4)2.55 (4)3.367 (4)157 (3)
N8—H8A···Cl1vii0.86 (4)2.54 (4)3.326 (4)152 (3)
N8—H8B···Cl1viii0.85 (3)2.55 (3)3.298 (4)148 (4)
Table 1

Selected bond lengths (Å)

Cu1—S12.3091 (9)
Cu1—S22.2617 (10)
Cu1—S32.2728 (10)
Cu1—Cl23.1394 (12)
Cu2—S1i2.3081 (9)
Cu2—S32.2747 (9)
Cu2—S42.2421 (9)
Cu2—Cl12.8687 (9)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Cl1ii0.85 (3)2.44 (3)3.230 (3)154 (4)
N1—H1B⋯S4iii0.87 (3)2.55 (3)3.404 (4)171 (3)
N2—H2A⋯S20.87 (3)2.54 (3)3.379 (3)164 (3)
N2—H2B⋯Cl1ii0.86 (3)2.56 (3)3.344 (3)153 (3)
N3—H3A⋯S10.87 (3)2.65 (3)3.488 (4)164 (3)
N3—H3B⋯Cl2iv0.86 (4)2.57 (4)3.373 (4)156 (4)
N4—H4A⋯Cl2iv0.85 (3)2.49 (3)3.309 (3)161 (3)
N4—H4B⋯Cl2v0.84 (3)2.55 (3)3.340 (3)157 (4)
N5—H5A⋯Cl20.86 (3)2.35 (3)3.197 (3)167 (4)
N5—H5B⋯Cl2vi0.86 (3)2.55 (4)3.356 (3)157 (3)
N6—H6A⋯Cl2i0.87 (4)2.66 (4)3.323 (3)134 (4)
N6—H6B⋯Cl10.86 (2)2.44 (2)3.296 (3)174 (3)
N7—H7A⋯Cl10.85 (3)2.61 (4)3.343 (4)145 (3)
N7—H7B⋯Cl1vii0.87 (4)2.55 (4)3.367 (4)157 (3)
N8—H8A⋯Cl1vii0.86 (4)2.54 (4)3.326 (4)152 (3)
N8—H8B⋯Cl1viii0.85 (3)2.55 (3)3.298 (4)148 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .

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