Literature DB >> 22405089

Haploinsufficiency of ARID1B, a member of the SWI/SNF-a chromatin-remodeling complex, is a frequent cause of intellectual disability.

Juliane Hoyer1, Arif B Ekici, Sabine Endele, Bernt Popp, Christiane Zweier, Antje Wiesener, Eva Wohlleber, Andreas Dufke, Eva Rossier, Corinna Petsch, Markus Zweier, Ina Göhring, Alexander M Zink, Gudrun Rappold, Evelin Schröck, Dagmar Wieczorek, Olaf Riess, Hartmut Engels, Anita Rauch, André Reis.   

Abstract

Intellectual disability (ID) is a clinically and genetically heterogeneous common condition that remains etiologically unresolved in the majority of cases. Although several hundred diseased genes have been identified in X-linked, autosomal-recessive, or syndromic types of ID, the establishment of an etiological basis remains a difficult task in unspecific, sporadic cases. Just recently, de novo mutations in SYNGAP1, STXBP1, MEF2C, and GRIN2B were reported as relatively common causes of ID in such individuals. On the basis of a patient with severe ID and a 2.5 Mb microdeletion including ARID1B in chromosomal region 6q25, we performed mutational analysis in 887 unselected patients with unexplained ID. In this cohort, we found eight (0.9%) additional de novo nonsense or frameshift mutations predicted to cause haploinsufficiency. Our findings indicate that haploinsufficiency of ARID1B, a member of the SWI/SNF-A chromatin-remodeling complex, is a common cause of ID, and they add to the growing evidence that chromatin-remodeling defects are an important contributor to neurodevelopmental disorders. Copyright Â
© 2012 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22405089      PMCID: PMC3309205          DOI: 10.1016/j.ajhg.2012.02.007

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  24 in total

Review 1.  Genetics of early onset cognitive impairment.

Authors:  Hans Hilger Ropers
Journal:  Annu Rev Genomics Hum Genet       Date:  2010       Impact factor: 8.929

2.  Mutations in MEF2C from the 5q14.3q15 microdeletion syndrome region are a frequent cause of severe mental retardation and diminish MECP2 and CDKL5 expression.

Authors:  Markus Zweier; Anne Gregor; Christiane Zweier; Hartmut Engels; Heinrich Sticht; Eva Wohlleber; Emilia K Bijlsma; Susan E Holder; Martin Zenker; Eva Rossier; Ute Grasshoff; Diana S Johnson; Lisa Robertson; Helen V Firth; Arif B Ekici; André Reis; Anita Rauch
Journal:  Hum Mutat       Date:  2010-06       Impact factor: 4.878

3.  Distinct mammalian SWI/SNF chromatin remodeling complexes with opposing roles in cell-cycle control.

Authors:  Norman G Nagl; Xiaomei Wang; Antonia Patsialou; Michael Van Scoy; Elizabeth Moran
Journal:  EMBO J       Date:  2007-01-25       Impact factor: 11.598

4.  Interstitial deletion of 6q25.2-q25.3: a novel microdeletion syndrome associated with microcephaly, developmental delay, dysmorphic features and hearing loss.

Authors:  Sandesh Chakravarthy Sreenath Nagamani; Ayelet Erez; Christine Eng; Zhishuo Ou; Craig Chinault; Laura Workman; James Coldwell; Pawel Stankiewicz; Ankita Patel; James R Lupski; Sau Wai Cheung
Journal:  Eur J Hum Genet       Date:  2008-11-26       Impact factor: 4.246

5.  Mutations in SYNGAP1 in autosomal nonsyndromic mental retardation.

Authors:  Fadi F Hamdan; Julie Gauthier; Dan Spiegelman; Anne Noreau; Yan Yang; Stéphanie Pellerin; Sylvia Dobrzeniecka; Mélanie Côté; Elizabeth Perreau-Linck; Elizabeth Perreault-Linck; Lionel Carmant; Guy D'Anjou; Eric Fombonne; Anjene M Addington; Judith L Rapoport; Lynn E Delisi; Marie-Odile Krebs; Faycal Mouaffak; Ridha Joober; Laurent Mottron; Pierre Drapeau; Claude Marineau; Ronald G Lafrenière; Jean Claude Lacaille; Guy A Rouleau; Jacques L Michaud
Journal:  N Engl J Med       Date:  2009-02-05       Impact factor: 91.245

Review 6.  The genetic landscape of intellectual disability arising from chromosome X.

Authors:  Jozef Gécz; Cheryl Shoubridge; Mark Corbett
Journal:  Trends Genet       Date:  2009-06-24       Impact factor: 11.639

7.  Mammalian SWI/SNF--a subunit BAF250/ARID1 is an E3 ubiquitin ligase that targets histone H2B.

Authors:  Xuan Shirley Li; Patrick Trojer; Tatsushi Matsumura; Jessica E Treisman; Naoko Tanese
Journal:  Mol Cell Biol       Date:  2010-01-19       Impact factor: 4.272

8.  Monoubiquitinated H2B is associated with the transcribed region of highly expressed genes in human cells.

Authors:  Neri Minsky; Efrat Shema; Yair Field; Meromit Schuster; Eran Segal; Moshe Oren
Journal:  Nat Cell Biol       Date:  2008-03-16       Impact factor: 28.824

9.  De novo STXBP1 mutations in mental retardation and nonsyndromic epilepsy.

Authors:  Fadi F Hamdan; Amélie Piton; Julie Gauthier; Anne Lortie; François Dubeau; Sylvia Dobrzeniecka; Dan Spiegelman; Anne Noreau; Stéphanie Pellerin; Mélanie Côté; Edouard Henrion; Eric Fombonne; Laurent Mottron; Claude Marineau; Pierre Drapeau; Ronald G Lafrenière; Jean Claude Lacaille; Guy A Rouleau; Jacques L Michaud
Journal:  Ann Neurol       Date:  2009-06       Impact factor: 10.422

10.  A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation.

Authors:  Patrick S Tarpey; Raffaella Smith; Erin Pleasance; Annabel Whibley; Sarah Edkins; Claire Hardy; Sarah O'Meara; Calli Latimer; Ed Dicks; Andrew Menzies; Phil Stephens; Matt Blow; Chris Greenman; Yali Xue; Chris Tyler-Smith; Deborah Thompson; Kristian Gray; Jenny Andrews; Syd Barthorpe; Gemma Buck; Jennifer Cole; Rebecca Dunmore; David Jones; Mark Maddison; Tatiana Mironenko; Rachel Turner; Kelly Turrell; Jennifer Varian; Sofie West; Sara Widaa; Paul Wray; Jon Teague; Adam Butler; Andrew Jenkinson; Mingming Jia; David Richardson; Rebecca Shepherd; Richard Wooster; M Isabel Tejada; Francisco Martinez; Gemma Carvill; Rene Goliath; Arjan P M de Brouwer; Hans van Bokhoven; Hilde Van Esch; Jamel Chelly; Martine Raynaud; Hans-Hilger Ropers; Fatima E Abidi; Anand K Srivastava; James Cox; Ying Luo; Uma Mallya; Jenny Moon; Josef Parnau; Shehla Mohammed; John L Tolmie; Cheryl Shoubridge; Mark Corbett; Alison Gardner; Eric Haan; Sinitdhorn Rujirabanjerd; Marie Shaw; Lucianne Vandeleur; Tod Fullston; Douglas F Easton; Jackie Boyle; Michael Partington; Anna Hackett; Michael Field; Cindy Skinner; Roger E Stevenson; Martin Bobrow; Gillian Turner; Charles E Schwartz; Jozef Gecz; F Lucy Raymond; P Andrew Futreal; Michael R Stratton
Journal:  Nat Genet       Date:  2009-04-19       Impact factor: 38.330

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  108 in total

1.  Translocations disrupting PHF21A in the Potocki-Shaffer-syndrome region are associated with intellectual disability and craniofacial anomalies.

Authors:  Hyung-Goo Kim; Hyun-Taek Kim; Natalia T Leach; Fei Lan; Reinhard Ullmann; Asli Silahtaroglu; Ingo Kurth; Anja Nowka; Ihn Sik Seong; Yiping Shen; Michael E Talkowski; Douglas Ruderfer; Ji-Hyun Lee; Caron Glotzbach; Kyungsoo Ha; Susanne Kjaergaard; Alex V Levin; Bernd F Romeike; Tjitske Kleefstra; Oliver Bartsch; Sarah H Elsea; Ethylin Wang Jabs; Marcy E MacDonald; David J Harris; Bradley J Quade; Hans-Hilger Ropers; Lisa G Shaffer; Kerstin Kutsche; Lawrence C Layman; Niels Tommerup; Vera M Kalscheuer; Yang Shi; Cynthia C Morton; Cheol-Hee Kim; James F Gusella
Journal:  Am J Hum Genet       Date:  2012-07-05       Impact factor: 11.025

Review 2.  Biology and Treatment of Rhabdoid Tumor.

Authors:  James I Geller; Jacquelyn J Roth; Jaclyn A Biegel
Journal:  Crit Rev Oncog       Date:  2015

3.  De novo loss-of-function mutations in SETD5, encoding a methyltransferase in a 3p25 microdeletion syndrome critical region, cause intellectual disability.

Authors:  Detelina Grozeva; Keren Carss; Olivera Spasic-Boskovic; Michael J Parker; Hayley Archer; Helen V Firth; Soo-Mi Park; Natalie Canham; Susan E Holder; Meredith Wilson; Anna Hackett; Michael Field; James A B Floyd; Matthew Hurles; F Lucy Raymond
Journal:  Am J Hum Genet       Date:  2014-03-27       Impact factor: 11.025

4.  Exome sequencing unravels unexpected differential diagnoses in individuals with the tentative diagnosis of Coffin-Siris and Nicolaides-Baraitser syndromes.

Authors:  Nuria C Bramswig; Hermann-Josef Lüdecke; Yasemin Alanay; Beate Albrecht; Alexander Barthelmie; Koray Boduroglu; Diana Braunholz; Almuth Caliebe; Krystyna H Chrzanowska; Johanna Christina Czeschik; Sabine Endele; Elisabeth Graf; Encarna Guillén-Navarro; Pelin Özlem Simsek Kiper; Vanesa López-González; Ilaria Parenti; Jelena Pozojevic; Gulen Eda Utine; Thomas Wieland; Frank J Kaiser; Bernd Wollnik; Tim M Strom; Dagmar Wieczorek
Journal:  Hum Genet       Date:  2015-02-28       Impact factor: 4.132

5.  Coffin-Siris Syndrome with obesity, macrocephaly, hepatomegaly and hyperinsulinism caused by a mutation in the ARID1B gene.

Authors:  Mari-Anne Vals; Eve Õiglane-Shlik; Margit Nõukas; Riina Shor; Aleksandr Peet; Mart Kals; Paula Ann Kivistik; Andres Metspalu; Katrin Õunap
Journal:  Eur J Hum Genet       Date:  2014-02-26       Impact factor: 4.246

6.  METTL23, a transcriptional partner of GABPA, is essential for human cognition.

Authors:  Rachel E Reiff; Bassam R Ali; Byron Baron; Timothy W Yu; Salma Ben-Salem; Michael E Coulter; Christian R Schubert; R Sean Hill; Nadia A Akawi; Banan Al-Younes; Namik Kaya; Gilad D Evrony; Muna Al-Saffar; Jillian M Felie; Jennifer N Partlow; Christine M Sunu; Pierre Schembri-Wismayer; Fowzan S Alkuraya; Brian F Meyer; Christopher A Walsh; Lihadh Al-Gazali; Ganeshwaran H Mochida
Journal:  Hum Mol Genet       Date:  2014-02-05       Impact factor: 6.150

Review 7.  Mendelian disorders of the epigenetic machinery: tipping the balance of chromatin states.

Authors:  Jill A Fahrner; Hans T Bjornsson
Journal:  Annu Rev Genomics Hum Genet       Date:  2014       Impact factor: 8.929

8.  Missense variants in the chromatin remodeler CHD1 are associated with neurodevelopmental disability.

Authors:  Genay O Pilarowski; Hilary J Vernon; Carolyn D Applegate; Leandros Boukas; Megan T Cho; Christina A Gurnett; Paul J Benke; Erin Beaver; Jennifer M Heeley; Livija Medne; Ian D Krantz; Meron Azage; Dmitriy Niyazov; Lindsay B Henderson; Ingrid M Wentzensen; Berivan Baskin; Maria J Guillen Sacoto; Gregory D Bowman; Hans T Bjornsson
Journal:  J Med Genet       Date:  2017-09-02       Impact factor: 6.318

Review 9.  Transcriptional regulation and its misregulation in disease.

Authors:  Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

Review 10.  The role of ARID1B, a BAF chromatin remodeling complex subunit, in neural development and behavior.

Authors:  Jeffrey J Moffat; Eui-Man Jung; Minhan Ka; Amanda L Smith; Byeong Tak Jeon; Gijs W E Santen; Woo-Yang Kim
Journal:  Prog Neuropsychopharmacol Biol Psychiatry       Date:  2018-08-24       Impact factor: 5.067

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