Literature DB >> 25184531

Mendelian disorders of the epigenetic machinery: tipping the balance of chromatin states.

Jill A Fahrner1, Hans T Bjornsson.   

Abstract

Mendelian disorders of the epigenetic machinery are a newly delineated group of multiple congenital anomaly and intellectual disability syndromes resulting from mutations in genes encoding components of the epigenetic machinery. The gene products affected in these inherited conditions act in trans and are expected to have widespread epigenetic consequences. Many of these syndromes demonstrate phenotypic overlap with classical imprinting disorders and with one another. The various writer and eraser systems involve opposing players, which we propose must maintain a balance between open and closed chromatin states in any given cell. An imbalance might lead to disrupted expression of disease-relevant target genes. We suggest that classifying disorders based on predicted effects on this balance would be informative regarding pathogenesis. Furthermore, strategies targeted at restoring this balance might offer novel therapeutic avenues, taking advantage of available agents such as histone deacetylase inhibitors and histone acetylation antagonists.

Entities:  

Keywords:  DNA methylation; chromatin; epigenetics; epigenomics; histone tail modifications; therapeutic development

Mesh:

Substances:

Year:  2014        PMID: 25184531      PMCID: PMC4406255          DOI: 10.1146/annurev-genom-090613-094245

Source DB:  PubMed          Journal:  Annu Rev Genomics Hum Genet        ISSN: 1527-8204            Impact factor:   8.929


  137 in total

1.  Heterozygous missense mutations in SMARCA2 cause Nicolaides-Baraitser syndrome.

Authors:  Jeroen K J Van Houdt; Beata Anna Nowakowska; Sérgio B Sousa; Barbera D C van Schaik; Eve Seuntjens; Nelson Avonce; Alejandro Sifrim; Omar A Abdul-Rahman; Marie-José H van den Boogaard; Armand Bottani; Marco Castori; Valérie Cormier-Daire; Matthew A Deardorff; Isabel Filges; Alan Fryer; Jean-Pierre Fryns; Simone Gana; Livia Garavelli; Gabriele Gillessen-Kaesbach; Bryan D Hall; Denise Horn; Danny Huylebroeck; Jakub Klapecki; Malgorzata Krajewska-Walasek; Alma Kuechler; Matthew A Lines; Saskia Maas; Kay D Macdermot; Shane McKee; Alex Magee; Stella A de Man; Yves Moreau; Fanny Morice-Picard; Ewa Obersztyn; Jacek Pilch; Elizabeth Rosser; Nora Shannon; Irene Stolte-Dijkstra; Patrick Van Dijck; Catheline Vilain; Annick Vogels; Emma Wakeling; Dagmar Wieczorek; Louise Wilson; Orsetta Zuffardi; Antoine H C van Kampen; Koenraad Devriendt; Raoul Hennekam; Joris Robert Vermeesch
Journal:  Nat Genet       Date:  2012-02-26       Impact factor: 38.330

Review 2.  Phenotypic plasticity and the epigenetics of human disease.

Authors:  Andrew P Feinberg
Journal:  Nature       Date:  2007-05-24       Impact factor: 49.962

3.  Mutations in the chromatin-associated protein ATRX.

Authors:  Richard J Gibbons; Takahito Wada; Christopher A Fisher; Nicola Malik; Matthew J Mitson; David P Steensma; Alan Fryer; David R Goudie; Ian D Krantz; Joanne Traeger-Synodinos
Journal:  Hum Mutat       Date:  2008-06       Impact factor: 4.878

4.  The transcriptional coactivators p300 and CBP are histone acetyltransferases.

Authors:  V V Ogryzko; R L Schiltz; V Russanova; B H Howard; Y Nakatani
Journal:  Cell       Date:  1996-11-29       Impact factor: 41.582

Review 5.  X-inactivation, imprinting, and long noncoding RNAs in health and disease.

Authors:  Jeannie T Lee; Marisa S Bartolomei
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

6.  H3K36 methylation antagonizes PRC2-mediated H3K27 methylation.

Authors:  Wen Yuan; Mo Xu; Chang Huang; Nan Liu; She Chen; Bing Zhu
Journal:  J Biol Chem       Date:  2011-01-14       Impact factor: 5.157

7.  De novo mutations in the genome organizer CTCF cause intellectual disability.

Authors:  Anne Gregor; Martin Oti; Evelyn N Kouwenhoven; Juliane Hoyer; Heinrich Sticht; Arif B Ekici; Susanne Kjaergaard; Anita Rauch; Hendrik G Stunnenberg; Steffen Uebe; Georgia Vasileiou; André Reis; Huiqing Zhou; Christiane Zweier
Journal:  Am J Hum Genet       Date:  2013-06-06       Impact factor: 11.025

8.  Epigenetic inactivation of the Sotos overgrowth syndrome gene histone methyltransferase NSD1 in human neuroblastoma and glioma.

Authors:  María Berdasco; Santiago Ropero; Fernando Setien; Mario F Fraga; Pablo Lapunzina; Régine Losson; Miguel Alaminos; Nai-Kong Cheung; Nazneen Rahman; Manel Esteller
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-14       Impact factor: 11.205

Review 9.  The role of MeCP2 in the brain.

Authors:  Jacky Guy; Hélène Cheval; Jim Selfridge; Adrian Bird
Journal:  Annu Rev Cell Dev Biol       Date:  2011-06-29       Impact factor: 13.827

Review 10.  The chromatin remodeller ATRX: a repeat offender in human disease.

Authors:  David Clynes; Douglas R Higgs; Richard J Gibbons
Journal:  Trends Biochem Sci       Date:  2013-08-01       Impact factor: 13.807

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  37 in total

1.  Dominant mutations in KAT6A cause intellectual disability with recognizable syndromic features.

Authors:  Emma Tham; Anna Lindstrand; Avni Santani; Helena Malmgren; Addie Nesbitt; Holly A Dubbs; Elaine H Zackai; Michael J Parker; Francisca Millan; Kenneth Rosenbaum; Golder N Wilson; Ann Nordgren
Journal:  Am J Hum Genet       Date:  2015-02-26       Impact factor: 11.025

2.  Exploring by whole exome sequencing patients with initial diagnosis of Rubinstein-Taybi syndrome: the interconnections of epigenetic machinery disorders.

Authors:  Gloria Negri; Pamela Magini; Donatella Milani; Milena Crippa; Elisa Biamino; Maria Piccione; Stefano Sotgiu; Chiara Perrìa; Giuseppina Vitiello; Marina Frontali; Antonella Boni; Elisabetta Di Fede; Maria Chiara Gandini; Elisa Adele Colombo; Michael J Bamshad; Deborah A Nickerson; Joshua D Smith; Italia Loddo; Palma Finelli; Marco Seri; Tommaso Pippucci; Lidia Larizza; Cristina Gervasini
Journal:  Hum Genet       Date:  2019-02-26       Impact factor: 4.132

3.  Precocious chondrocyte differentiation disrupts skeletal growth in Kabuki syndrome mice.

Authors:  Jill A Fahrner; Wan-Ying Lin; Ryan C Riddle; Leandros Boukas; Valerie B DeLeon; Sheetal Chopra; Susan E Lad; Teresa Romeo Luperchio; Kasper D Hansen; Hans T Bjornsson
Journal:  JCI Insight       Date:  2019-10-17

4.  Molecularly confirmed Kabuki (Niikawa-Kuroki) syndrome patients demonstrate a specific cognitive profile with extensive visuospatial abnormalities.

Authors:  J Harris; E M Mahone; H T Bjornsson
Journal:  J Intellect Disabil Res       Date:  2019-02-14

5.  Delineation of a Human Mendelian Disorder of the DNA Demethylation Machinery: TET3 Deficiency.

Authors:  David B Beck; Ana Petracovici; Chongsheng He; Hannah W Moore; Raymond J Louie; Muhammad Ansar; Sofia Douzgou; Sivagamy Sithambaram; Trudie Cottrell; Regie Lyn P Santos-Cortez; Eloise J Prijoles; Renee Bend; Boris Keren; Cyril Mignot; Marie-Christine Nougues; Katrin Õunap; Tiia Reimand; Sander Pajusalu; Muhammad Zahid; Muhammad Arif Nadeem Saqib; Julien Buratti; Eleanor G Seaby; Kirsty McWalter; Aida Telegrafi; Dustin Baldridge; Marwan Shinawi; Suzanne M Leal; G Bradley Schaefer; Roger E Stevenson; Siddharth Banka; Roberto Bonasio; Jill A Fahrner
Journal:  Am J Hum Genet       Date:  2020-01-09       Impact factor: 11.025

6.  Genomic DNA Methylation Signatures Enable Concurrent Diagnosis and Clinical Genetic Variant Classification in Neurodevelopmental Syndromes.

Authors:  Erfan Aref-Eshghi; David I Rodenhiser; Laila C Schenkel; Hanxin Lin; Cindy Skinner; Peter Ainsworth; Guillaume Paré; Rebecca L Hood; Dennis E Bulman; Kristin D Kernohan; Kym M Boycott; Philippe M Campeau; Charles Schwartz; Bekim Sadikovic
Journal:  Am J Hum Genet       Date:  2018-01-04       Impact factor: 11.025

Review 7.  Mendelian disorders of the epigenetic machinery: postnatal malleability and therapeutic prospects.

Authors:  Jill A Fahrner; Hans T Bjornsson
Journal:  Hum Mol Genet       Date:  2019-11-21       Impact factor: 6.150

8.  Recapitulation and Reversal of Schizophrenia-Related Phenotypes in Setd1a-Deficient Mice.

Authors:  Jun Mukai; Enrico Cannavò; Gregg W Crabtree; Ziyi Sun; Anastasia Diamantopoulou; Pratibha Thakur; Chia-Yuan Chang; Yifei Cai; Stavros Lomvardas; Atsushi Takata; Bin Xu; Joseph A Gogos
Journal:  Neuron       Date:  2019-10-09       Impact factor: 17.173

9.  The defining DNA methylation signature of Kabuki syndrome enables functional assessment of genetic variants of unknown clinical significance.

Authors:  Erfan Aref-Eshghi; Laila C Schenkel; Hanxin Lin; Cindy Skinner; Peter Ainsworth; Guillaume Paré; David Rodenhiser; Charles Schwartz; Bekim Sadikovic
Journal:  Epigenetics       Date:  2017-11-07       Impact factor: 4.528

10.  Missense variants in the chromatin remodeler CHD1 are associated with neurodevelopmental disability.

Authors:  Genay O Pilarowski; Hilary J Vernon; Carolyn D Applegate; Leandros Boukas; Megan T Cho; Christina A Gurnett; Paul J Benke; Erin Beaver; Jennifer M Heeley; Livija Medne; Ian D Krantz; Meron Azage; Dmitriy Niyazov; Lindsay B Henderson; Ingrid M Wentzensen; Berivan Baskin; Maria J Guillen Sacoto; Gregory D Bowman; Hans T Bjornsson
Journal:  J Med Genet       Date:  2017-09-02       Impact factor: 6.318

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