| Literature DB >> 22389719 |
Yi Cai1, Jianghua Wang, Chengxi Ren, Michael Ittmann.
Abstract
Prostate cancer is the most common visceral malignancy in Western men and a major cause of cancer deaths. Increased activation of the AKT and NFkB pathways have been identified as critical steps in prostate cancer initiation and progression. GGAP2 (GTP-binding and GTPase activating protein 2) is a multidomain protein that contains an N-terminal Ras homology domain (GTPase), followed by a PH domain, a C-terminal GAP domain and an ankyrin repeat domain. GGAP2 can directly activate signaling via both the AKT and NFkB pathways and acts as a node of crosstalk between these pathways. Increased GGAP2 expression is present in three quarters of prostate cancers. Mutations of GGAP2 have been reported in cell lines from other malignancies. We therefore analyzed 84 prostate cancer tissues and 43 benign prostate tissues for somatic mutations in GGAP2 by direct sequencing of individual clones derived from the GAP and GTPase domains of normal and tumor tissue. Overall, half of cancers contained mutant GAP domain clones and in 20% of cancers, 30% or more of clones were mutant in the GAP domain. Surprisingly, the mutations were heterogeneous and nonclonal, with multiple different mutations being present in many tumors. Similar findings were observed in the analysis of the GTPase domain. Mutant GGAP2 proteins had significantly higher transcriptional activity using AP-1 responsive reporter constructs when compared to wild-type protein. Furthermore, the presence of these mutations was associated with aggressive clinical behavior. The presence of high frequency nonclonal mutations of a single gene is novel and represents a new mode of genetic alteration that can promote tumor progression. Analysis of mutations in cancer has been used to predict outcome and guide therapeutic target identification but such analysis has focused on clonal mutations. Our studies indicate that in some cases high frequency nonclonal mutations may need to be assessed as well.Entities:
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Year: 2012 PMID: 22389719 PMCID: PMC3289671 DOI: 10.1371/journal.pone.0032708
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Mutation analysis of the GAP domain of GGAP2 in prostate cancer.
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| ID | Type | Clones | Mutations | Percent | |||||
| 7357 | Cancer | 19 | 8 | 42 | E656G | V711M | I589F | S584A | |
| L624P | E696G | L630P | W703X | ||||||
| 1954 | 17 | 5 | 29 | L624M | E672G | L643P | S705T | ||
| AS692G | |||||||||
| 11686 | 20 | 4 | 20 | S666P/K681E | N648S | G594R/L632W | |||
| 10420 | 12 | 4 | 33 | R653C | A705G | R679H | V711M | ||
| 11147 | 14 | 3 | 21 | D649G | I678T | T640A | |||
| 9523 | 18 | 3 | 17 | G621D | G594E | A580V/A607T | |||
| 6882 | 14 | 3 | 21 | L641P | A645D | Q709X | |||
| 6098 | 7 | 2 | 29 | D710V | L702P | ||||
| 6511 | 10 | 2 | 20 | R662C | T622I | ||||
| 3689 | 12 | 2 | 17 | T599P | L686P | ||||
| 8032 | 13 | 1 | 8 | C593R | |||||
| 12375 | 13 | 1 | 8 | L698P | |||||
| 97 | Benign | 16 | 1 | 6 | S670P | ||||
| 11627 | 16 | 1 | 6 | L620V | |||||
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| 19334 | Cancer | 8 | 5 | 63 | E638G | W600R | I611V | E612K | |
| A721V | |||||||||
| 27312 | 8 | 4 | 50 | A663P | Q707R | I581V | V576A | ||
| 11537 | 9 | 4 | 44 | D633G | Q684R | S625P | A651G | ||
| 23536 | 10 | 4 | 40 | N648Y | V591L | G586R | Q707R | ||
| 47974 | 9 | 4 | 44 | E612V | V642G | I646L | L639M | ||
| 17557 | 6 | 3 | 50 | K664Q | I609T | G621C | |||
| 6337 | 7 | 3 | 43 | T659A | I609T | A651G | |||
| 20088 | 7 | 3 | 43 | S657G | V706M | I611V | |||
| 17125 | 8 | 3 | 38 | I581V | R582P | I581V | |||
| 18099 | 10 | 3 | 30 | K664Q | H623R | A607V/E696G | |||
| 22766 | 10 | 3 | 30 | E612Q | G621S | S602N | |||
| 18062 | 10 | 3 | 30 | S692G | T569A | A544T | |||
| 10702 | 7 | 2 | 29 | Y682C | Q707R | ||||
| 21918 | 8 | 2 | 25 | A708V | A708V | ||||
| 8665 | 10 | 1 | 10 | W600L/S629L | |||||
| 27804 | 8 | 1 | 12 | N652I/L686P | |||||
| 29823 | 8 | 1 | 12 | R653C | |||||
| 26065 | 6 | 1 | 17 | S629P | |||||
| 24069 | 10 | 1 | 10 | D592G | |||||
| 29886 | 10 | 1 | 10 | Q707X | |||||
| 25909 | Benign | 9 | 1 | 11 | T659A |
Missense and stop mutations cancer and benign tissues are shown using the format: normal amino acid/amino acid number in GGAP2/mutant amino acid. An X indicates a stop mutation. Only tissues with missense or stop mutations are shown.
Mutation analysis of the GTPase domain of GGAP2 in prostate cancer.
| ID | Tissue | Clones | Mutations | Percent | Missense | mutations | ||
| 10764 | Cancer | 9 | 4 | 44 | V364A | L239P | P300S | R182G |
| 6346 | 10 | 4 | 40 | E281G | S275P | A198V | S302P | |
| 12161 | 10 | 4 | 40 | A173T | N265D | E167K | H117R | |
| 4343 | 5 | 2 | 40 | Q115R | L246F | |||
| 8032 | 9 | 2 | 22 | H268R/L234P | Q262R | |||
| 7357 | 10 | 2 | 20 | R234C | S329N | |||
| 8748 | 8 | 2 | 25 | S207N | C200G | |||
| 1954 | 8 | 1 | 12 | E332G | ||||
| 3230 | 7 | 1 | 14 | K360E | ||||
| 3689 | 8 | 1 | 12 | R310G | ||||
| 6882 | 10 | 1 | 10 | A292V | ||||
| 9560 | 7 | 1 | 14 | S329G | ||||
| 11147 | 6 | 1 | 17 | F223L | ||||
| 14198 | 7 | 1 | 14 | A175T | ||||
| 15250 | 7 | 1 | 14 | K229E | ||||
| 1610 | Benign | 12 | 1 | 8 | H117R |
The GTPase domain was cloned from cDNAs from prostate cancer (>70% cancer) or benign peripheral zone tissues and sequenced. A total of 23 cancers and 12 benign tissue samples were analyzed. The number of clones is indicated as is the number and percentage of clones with missense mutations. For each individual tissue the missense mutations are shown using the format: normal amino acid/amino acid number in GGAP2/mutant amino acid. Only tissues with missense mutations are shown.
Summary of mutation analysis of GAP and GTPase.
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| Cancer | GAP (cDNA) | 15 | 206 | 38 | 2 |
| GAP (genomic) | 46 | 334 | 52 | 1 | |
| GTPase (cDNA) | 23 | 188 | 28 | 1 |
Summary of mutation analysis of GAP and GTPase clones from cDNA or genomic DNAs from prostate cancer or benign prostate tissues. Does not include the known germline polymorphic loci.
Figure 1GGAP2 mutations result in enhanced transcription from AP-1 reporter constructs.
Asterisks indicate statistically significant increase relative to wild-type (WT) GGAP2 by ANOVA (p<.05). Mean +/−SEM. Mutation and number of transfections are shown.
Figure 2Association of GAP domain mutations with clinical and pathological parameters associated with aggressive prostate cancer.
The fraction of clones containing missense or stop mutations for cases with each indicated clinical or pathological parameter is shown. All differences between pathological and clinical variables were statistically significant. Specifically: for early PSA recurrence (<2 years post surgery) versus no or late recurrence (p<0.001, chi sq); extracapsular extension (ECE) versus no ECE (p = 0.015, chi sq); seminal vesicle invasion (SVI) versus no SVI (p = 0.027, chi sq); pelvic lymph node metastasis (LN) versus no metastasis (p = 0.027, chi sq); Gleason 5/6 versus 7–10 (p = 0.002, chi sq).
Primers for site directed mutagenesis of GGAP2.
| L233S | For |
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| S275P | For |
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| L239P | For |
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| L643P | For |
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| V711M | For |
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| S692G | For |
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| L624P | For |
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| L643P | For |
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| Q115R | For |
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