Literature DB >> 22389377

Improved thermostability of Clostridium thermocellum endoglucanase Cel8A by using consensus-guided mutagenesis.

Michael Anbar1, Ozgur Gul, Raphael Lamed, Ugur O Sezerman, Edward A Bayer.   

Abstract

The use of thermostable cellulases is advantageous for the breakdown of lignocellulosic biomass toward the commercial production of biofuels. Previously, we have demonstrated the engineering of an enhanced thermostable family 8 cellulosomal endoglucanase (EC 3.2.1.4), Cel8A, from Clostridium thermocellum, using random error-prone PCR and a combination of three beneficial mutations, dominated by an intriguing serine-to-glycine substitution (M. Anbar, R. Lamed, E. A. Bayer, ChemCatChem 2:997-1003, 2010). In the present study, we used a bioinformatics-based approach involving sequence alignment of homologous family 8 glycoside hydrolases to create a library of consensus mutations in which residues of the catalytic module are replaced at specific positions with the most prevalent amino acids in the family. One of the mutants (G283P) displayed a higher thermal stability than the wild-type enzyme. Introducing this mutation into the previously engineered Cel8A triple mutant resulted in an optimized enzyme, increasing the half-life of activity by 14-fold at 85°C. Remarkably, no loss of catalytic activity was observed compared to that of the wild-type endoglucanase. The structural changes were simulated by molecular dynamics analysis, and specific regions were identified that contributed to the observed thermostability. Intriguingly, most of the proteins used for sequence alignment in determining the consensus residues were derived from mesophilic bacteria, with optimal temperatures well below that of C. thermocellum Cel8A.

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Year:  2012        PMID: 22389377      PMCID: PMC3346478          DOI: 10.1128/AEM.07985-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  37 in total

1.  Mutations from a family-shuffling-library reveal amino acid residues responsible for the thermostability of endoglucanase CelA from Clostridium thermocellum.

Authors:  Zhuo-Lin Yi; Zhong-Liu Wu
Journal:  Biotechnol Lett       Date:  2010-07-31       Impact factor: 2.461

2.  Structure-guided consensus approach to create a more thermostable penicillin G acylase.

Authors:  Karen M Polizzi; Javier F Chaparro-Riggers; Eduardo Vazquez-Figueroa; Andreas S Bommarius
Journal:  Biotechnol J       Date:  2006-05       Impact factor: 4.677

3.  Enhanced thermostability of methyl parathion hydrolase from Ochrobactrum sp. M231 by rational engineering of a glycine to proline mutation.

Authors:  Jian Tian; Ping Wang; Shan Gao; Xiaoyu Chu; Ningfeng Wu; Yunliu Fan
Journal:  FEBS J       Date:  2010-10-26       Impact factor: 5.542

4.  Biomass recalcitrance: engineering plants and enzymes for biofuels production.

Authors:  Michael E Himmel; Shi-You Ding; David K Johnson; William S Adney; Mark R Nimlos; John W Brady; Thomas D Foust
Journal:  Science       Date:  2007-02-09       Impact factor: 47.728

Review 5.  From cellulosomes to cellulosomics.

Authors:  Edward A Bayer; Raphael Lamed; Bryan A White; Harry J Flint
Journal:  Chem Rec       Date:  2008       Impact factor: 6.771

6.  Properties of a Clostridium thermocellum Endoglucanase Produced in Escherichia coli.

Authors:  W H Schwarz; F Gräbnitz; W L Staudenbauer
Journal:  Appl Environ Microbiol       Date:  1986-06       Impact factor: 4.792

7.  The refined crystal structure of Bacillus cereus oligo-1,6-glucosidase at 2.0 A resolution: structural characterization of proline-substitution sites for protein thermostabilization.

Authors:  K Watanabe; Y Hata; H Kizaki; Y Katsube; Y Suzuki
Journal:  J Mol Biol       Date:  1997-05-30       Impact factor: 5.469

8.  Enhancing the thermostability of alpha-glucosidase from Thermoanaerobacter tengcongensis MB4 by single proline substitution.

Authors:  Cheng Zhou; Yanfen Xue; Yanhe Ma
Journal:  J Biosci Bioeng       Date:  2010-01-03       Impact factor: 2.894

9.  Design of thermostable beta-propeller phytases with activity over a broad range of pHs and their overproduction by Pichia pastoris.

Authors:  José M Viader-Salvadó; Juan A Gallegos-López; J Gerardo Carreón-Treviño; Miguel Castillo-Galván; Arturo Rojo-Domínguez; Martha Guerrero-Olazarán
Journal:  Appl Environ Microbiol       Date:  2010-08-06       Impact factor: 4.792

10.  Incorporating Synthetic Oligonucleotides via Gene Reassembly (ISOR): a versatile tool for generating targeted libraries.

Authors:  Asael Herman; Dan S Tawfik
Journal:  Protein Eng Des Sel       Date:  2007-05-05       Impact factor: 1.650

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  27 in total

Review 1.  Tailoring Proteins to Re-Evolve Nature: A Short Review.

Authors:  Angelica Jimenez-Rosales; Miriam V Flores-Merino
Journal:  Mol Biotechnol       Date:  2018-12       Impact factor: 2.695

2.  A New Member of Family 11 Polysaccharide Lyase, Rhamnogalacturonan Lyase (CtRGLf) from Clostridium thermocellum.

Authors:  Arun Dhillon; Vania O Fernandes; Fernando M V Dias; José A M Prates; Luis M A Ferreira; Carlos M G A Fontes; M S J Centeno; Arun Goyal
Journal:  Mol Biotechnol       Date:  2016-04       Impact factor: 2.695

Review 3.  Handling gene and protein names in the age of bioinformatics: the special challenge of secreted multimodular bacterial enzymes such as the cbhA/cbh9A gene of Clostridium thermocellum.

Authors:  Wolfgang H Schwarz; Roman Brunecky; Jannis Broeker; Wolfgang Liebl; Vladimir V Zverlov
Journal:  World J Microbiol Biotechnol       Date:  2018-02-26       Impact factor: 3.312

4.  Consensus protein engineering on the thermostable histone-like bacterial protein HUs significantly improves stability and DNA binding affinity.

Authors:  Anastasios Georgoulis; Maria Louka; Stratos Mylonas; Philemon Stavros; George Nounesis; Constantinos E Vorgias
Journal:  Extremophiles       Date:  2020-01-24       Impact factor: 2.395

5.  Polarity Alteration of a Calcium Site Induces a Hydrophobic Interaction Network and Enhances Cel9A Endoglucanase Thermostability.

Authors:  Hsiu-Jung Wang; Yu-Yuan Hsiao; Yu-Pei Chen; Tien-Yang Ma; Ching-Ping Tseng
Journal:  Appl Environ Microbiol       Date:  2016-01-04       Impact factor: 4.792

6.  Improving the thermostability and catalytic efficiency of Bacillus deramificans pullulanase by site-directed mutagenesis.

Authors:  Xuguo Duan; Jian Chen; Jing Wu
Journal:  Appl Environ Microbiol       Date:  2013-04-26       Impact factor: 4.792

Review 7.  Thermostability engineering of industrial enzymes through structure modification.

Authors:  Nima Ghahremani Nezhad; Raja Noor Zaliha Raja Abd Rahman; Yahaya M Normi; Siti Nurbaya Oslan; Fairolniza Mohd Shariff; Thean Chor Leow
Journal:  Appl Microbiol Biotechnol       Date:  2022-07-09       Impact factor: 5.560

8.  4-Hydroxyphenylpyruvate Dioxygenase Thermolability Is Responsible for Temperature-Dependent Melanogenesis in Aeromonas salmonicida subsp. salmonicida.

Authors:  Yunqian Qiao; Jiao Wang; He Wang; Baozhong Chai; Chufeng Rao; Xiangdong Chen; Shishen Du
Journal:  Appl Environ Microbiol       Date:  2018-12-13       Impact factor: 4.792

Review 9.  From protein engineering to immobilization: promising strategies for the upgrade of industrial enzymes.

Authors:  Raushan Kumar Singh; Manish Kumar Tiwari; Ranjitha Singh; Jung-Kul Lee
Journal:  Int J Mol Sci       Date:  2013-01-10       Impact factor: 5.923

10.  Transcytosis in the blood-cerebrospinal fluid barrier of the mouse brain with an engineered receptor/ligand system.

Authors:  Héctor R Méndez-Gómez; Albert Galera-Prat; Craig Meyers; Weijun Chen; Jasbir Singh; Mariano Carrión-Vázquez; Nicholas Muzyczka
Journal:  Mol Ther Methods Clin Dev       Date:  2015-10-07       Impact factor: 6.698

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