Literature DB >> 22385969

SnapShot: Chromosome confirmation capture.

Ofir Hakim1, Tom Misteli.   

Abstract

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Year:  2012        PMID： 22385969      PMCID： PMC6374129          DOI： 10.1016/j.cell.2012.02.019

Source DB:  PubMed          Journal:  Cell        ISSN： 0092-8674            Impact factor:   41.582


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  20 in total

1.  Looping and interaction between hypersensitive sites in the active beta-globin locus.

Authors:  Bas Tolhuis; Robert Jan Palstra; Erik Splinter; Frank Grosveld; Wouter de Laat
Journal:  Mol Cell       Date:  2002-12       Impact factor: 17.970

2.  Genome-wide scanning of HoxB1-associated loci in mouse ES cells using an open-ended Chromosome Conformation Capture methodology.

Authors:  Hugo Würtele; Pierre Chartrand
Journal:  Chromosome Res       Date:  2006-07-12       Impact factor: 5.239

3.  Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.

Authors:  Josée Dostie; Todd A Richmond; Ramy A Arnaout; Rebecca R Selzer; William L Lee; Tracey A Honan; Eric D Rubio; Anton Krumm; Justin Lamb; Chad Nusbaum; Roland D Green; Job Dekker
Journal:  Genome Res       Date:  2006-09-05       Impact factor: 9.043

4.  Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

Authors:  Marieke Simonis; Petra Klous; Erik Splinter; Yuri Moshkin; Rob Willemsen; Elzo de Wit; Bas van Steensel; Wouter de Laat
Journal:  Nat Genet       Date:  2006-10-08       Impact factor: 38.330

5.  Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

Authors:  Zhihu Zhao; Gholamreza Tavoosidana; Mikael Sjölinder; Anita Göndör; Piero Mariano; Sha Wang; Chandrasekhar Kanduri; Magda Lezcano; Kuljeet Singh Sandhu; Umashankar Singh; Vinod Pant; Vijay Tiwari; Sreenivasulu Kurukuti; Rolf Ohlsson
Journal:  Nat Genet       Date:  2006-10-08       Impact factor: 38.330

6.  Quantitative analysis of chromosome conformation capture assays (3C-qPCR).

Authors:  Hélène Hagège; Petra Klous; Caroline Braem; Erik Splinter; Job Dekker; Guy Cathala; Wouter de Laat; Thierry Forné
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

7.  Interchromosomal interactions and olfactory receptor choice.

Authors:  Stavros Lomvardas; Gilad Barnea; David J Pisapia; Monica Mendelsohn; Jennifer Kirkland; Richard Axel
Journal:  Cell       Date:  2006-07-28       Impact factor: 41.582

8.  Capturing chromosome conformation.

Authors:  Job Dekker; Karsten Rippe; Martijn Dekker; Nancy Kleckner
Journal:  Science       Date:  2002-02-15       Impact factor: 47.728

9.  Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome.

Authors:  Shin-ichi Horike; Shutao Cai; Masaru Miyano; Jan-Fang Cheng; Terumi Kohwi-Shigematsu
Journal:  Nat Genet       Date:  2004-12-19       Impact factor: 38.330

10.  CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1.

Authors:  Jian Qun Ling; Tao Li; Ji Fan Hu; Thanh H Vu; Hui Ling Chen; Xin Wen Qiu; Athena M Cherry; Andrew R Hoffman
Journal:  Science       Date:  2006-04-14       Impact factor: 47.728
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  26 in total

Review 1.  Long-Range Chromatin Interactions.

Authors:  Job Dekker; Tom Misteli
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-10-01       Impact factor: 10.005

2.  Zooming in on genome organization.

Authors:  Xianghong Jasmine Zhou; Frank Alber
Journal:  Nat Methods       Date:  2012-10       Impact factor: 28.547

Review 3.  Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.

Authors:  Job Dekker; Marc A Marti-Renom; Leonid A Mirny
Journal:  Nat Rev Genet       Date:  2013-05-09       Impact factor: 53.242

Review 4.  From hypothesis to mechanism: uncovering nuclear pore complex links to gene expression.

Authors:  Laura T Burns; Susan R Wente
Journal:  Mol Cell Biol       Date:  2014-03-10       Impact factor: 4.272

5.  Using GRO-Seq to Measure Circadian Transcription and Discover Circadian Enhancers.

Authors:  Bin Fang; Dongyin Guan; Mitchell A Lazar
Journal:  Methods Mol Biol       Date:  2021

6.  Functional Screening of Candidate Causal Genes for Insulin Resistance in Human Preadipocytes and Adipocytes.

Authors:  Zhifen Chen; Haojie Yu; Xu Shi; Curtis R Warren; Luca A Lotta; Max Friesen; Torsten B Meissner; Claudia Langenberg; Martin Wabitsch; Nick Wareham; Mark D Benson; Rob E Gerszten; Chad A Cowan
Journal:  Circ Res       Date:  2019-11-19       Impact factor: 17.367

7.  Analysis of long-range chromatin interactions using Chromosome Conformation Capture.

Authors:  Natalia Naumova; Emily M Smith; Ye Zhan; Job Dekker
Journal:  Methods       Date:  2012-08-15       Impact factor: 3.608

Review 8.  The hierarchy of the 3D genome.

Authors:  Johan H Gibcus; Job Dekker
Journal:  Mol Cell       Date:  2013-03-07       Impact factor: 17.970

9.  A Dementia-Associated Risk Variant near TMEM106B Alters Chromatin Architecture and Gene Expression.

Authors:  Michael D Gallagher; Marijan Posavi; Peng Huang; Travis L Unger; Yosef Berlyand; Analise L Gruenewald; Alessandra Chesi; Elisabetta Manduchi; Andrew D Wells; Struan F A Grant; Gerd A Blobel; Christopher D Brown; Alice S Chen-Plotkin
Journal:  Am J Hum Genet       Date:  2017-10-19       Impact factor: 11.025

Review 10.  Pluripotency in 3D: genome organization in pluripotent cells.

Authors:  Matthew Denholtz; Kathrin Plath
Journal:  Curr Opin Cell Biol       Date:  2012-11-27       Impact factor: 8.382
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