Literature DB >> 23018997

Zooming in on genome organization.

Xianghong Jasmine Zhou, Frank Alber.   

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Year:  2012        PMID： 23018997      PMCID： PMC3806477          DOI： 10.1038/nmeth.2181

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  9 in total

1.  SnapShot: Chromosome confirmation capture.

Authors:  Ofir Hakim; Tom Misteli
Journal:  Cell       Date:  2012-03-02       Impact factor: 41.582

2.  Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture.

Authors:  Eitan Yaffe; Amos Tanay
Journal:  Nat Genet       Date:  2011-10-16       Impact factor: 38.330

3.  Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: from fixation to computation.

Authors:  Erik Splinter; Elzo de Wit; Harmen J G van de Werken; Petra Klous; Wouter de Laat
Journal:  Methods       Date:  2012-05-17       Impact factor: 3.608

4.  Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

Authors:  Marieke Simonis; Petra Klous; Erik Splinter; Yuri Moshkin; Rob Willemsen; Elzo de Wit; Bas van Steensel; Wouter de Laat
Journal:  Nat Genet       Date:  2006-10-08       Impact factor: 38.330

5.  Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

Authors:  Zhihu Zhao; Gholamreza Tavoosidana; Mikael Sjölinder; Anita Göndör; Piero Mariano; Sha Wang; Chandrasekhar Kanduri; Magda Lezcano; Kuljeet Singh Sandhu; Umashankar Singh; Vinod Pant; Vijay Tiwari; Sreenivasulu Kurukuti; Rolf Ohlsson
Journal:  Nat Genet       Date:  2006-10-08       Impact factor: 38.330

6.  Capturing chromosome conformation.

Authors:  Job Dekker; Karsten Rippe; Martijn Dekker; Nancy Kleckner
Journal:  Science       Date:  2002-02-15       Impact factor: 47.728

7.  Genome architectures revealed by tethered chromosome conformation capture and population-based modeling.

Authors:  Reza Kalhor; Harianto Tjong; Nimanthi Jayathilaka; Frank Alber; Lin Chen
Journal:  Nat Biotechnol       Date:  2011-12-25       Impact factor: 54.908

8.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

9.  Iterative correction of Hi-C data reveals hallmarks of chromosome organization.

Authors:  Maxim Imakaev; Geoffrey Fudenberg; Rachel Patton McCord; Natalia Naumova; Anton Goloborodko; Bryan R Lajoie; Job Dekker; Leonid A Mirny
Journal:  Nat Methods       Date:  2012-09-02       Impact factor: 28.547
  9 in total

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