| Literature DB >> 22384374 |
Geoff Joslyn, Fred W Wolf, Gerry Brush, Lianqun Wu, Marc Schuckit, Raymond L White.
Abstract
Alcohol use disorders are influenced by many interacting genetic and environmental factors. Highlighting this complexity is the observation that large genome-wide association experiments have implicated many genes with weak statistical support. Experimental model systems, cell culture and animal, have identified many genes and pathways involved in ethanol response, but their applicability to the development of alcohol use disorders in humans is undetermined. To overcome the limitations of any single experimental system, the analytical strategy used here was to identify genes that exert common phenotypic effects across multiple experimental systems. Specifically, we (1) performed a mouse linkage analysis to identify quantitative trait loci that influence ethanol-induced ataxia; (2) performed a human genetic association analysis of the mouse-identified loci against ethanol-induced body sway, a phenotype that is not only comparable to the mouse ethanol-ataxia phenotype but is also a genetically influenced endophenotype of alcohol use disorders; (3) performed behavioral genetic experiments in Drosophila showing that fly homologs of GPC5, the member of the glypican gene family implicated by both the human and mouse genetic analyses, influence the fly's response to ethanol; and (4) discovered data from the literature demonstrating that the genetically implicated gene's expression is not only temporally and spatially consistent with involvement in ethanol-induced behaviors but is also modulated by ethanol. The convergence of these data provides strong support to the hypothesis that GPC5 is involved in cellular and organismal ethanol response and the etiology of alcohol use disorders in humans.Entities:
Keywords: alcoholism; behavior; glypican; response to alcohol
Year: 2011 PMID: 22384374 PMCID: PMC3276178 DOI: 10.1534/g3.111.000976
Source DB: PubMed Journal: G3 (Bethesda) ISSN: 2160-1836 Impact factor: 3.154
Figure 1 Flowchart of the experimental strategy leading to the identification of GPC5 as a participant in ethanol-induced behaviors.
BXD phenotypes analyzed for genetic linkage
| Article PMID | GeneNetwork ID | Description |
|---|---|---|
| 10656187 | 10042 | Ethanol response (2.5 g/kg ip), ataxia, screen test sensitivity measured as the latency to fall, saline response minus ethanol response [seconds] by K. E. Browman and colleagues |
| 6683363 | 10078 | Ethanol response (dose, ip), ataxia on grid test, 2 to 10 min after injection [errors/run] by J. C. Crabbe and colleagues |
| 8627537 | 10144 | Ethanol sensitivity, initial ethanol-induced ataxia, onset threshold [mg/kg] by E. J. Gallaher and colleagues |
| 8627537 | 10145 | Ethanol response (dose route), maximal threshold to ethanol-induced ataxia [mg/ml] by E. J. Gallaher and colleagues |
| 12183685 | 10347 | Ethanol response (1.75 g/kg ip), initial sensitivity measured by blood ethanol concentration (BEC, retrobulbar bleed) at loss of balance using a dowel test (BEC time 0) [mg % ethanol] by S. L. Kirstein and colleagues |
| 12183685 | 10349 | Ethanol response (1.75 mg/kg ip), time to ataxia measured as loss of balance using a dowel test (Loss corresponds to BEC time 0) [min] by S. L. Kirstein and colleagues |
| 12183685 | 10350 | Ethanol response (1.75 mg/kg ip), duration of ataxia following the first ethanol injection using a dowel test (Regain Test 1 corresponds to BEC1) [min] by S. L. Kirstein and colleagues |
| 8627538 | 10497 | Ethanol response (2 g/kg ip), acute ataxia, difference between day 3 (first ethanol treatment) and day 2 (saline baseline) in the chronic drug group [n grid test errors/10 min test] by T. J. Phillips and colleagues |
| 8627538 | 10498 | Ethanol response (2 g/kg ip), acute ataxia measured using grid test (Accuscan activity monitor), difference between day 11 (first and only ethanol treatment) and day 2 (saline baseline) in the chronic saline group [n errors/activity counts/10 min test] by T. J. Phillips and colleagues |
| 8627538 | 10500 | Ethanol response (2 g/kg ip), difference in ataxia using grid test (Accuscan activity monitor) between acute ethanol on day 3 (first ethanol treatment) and day 2 (saline baseline) in the chronic ethanol group [n errors/activity counts/10 min test] by T. J. Phillips and colleagues |
| 8627538 | 10501 | Ethanol response (2 g/kg ip), difference in ataxia using grid test (Accuscan activity monitor) between injection on day 11 (first and only ethanol treatment) and day 2 (saline baseline) in the chronic saline group [errors/activity counts/10 min test] by T. J. Phillips and colleagues |
| 18830130 | 11006 | Ethanol response (1.75 g/kg ip), ataxia measured by rotarod performance, difference from saline baseline (supplementary data to Brigman |
Data can be retrieved at genenetwork.org using the GeneNetwork ID. The PMID links to the primary publication describing the experimental protocol (www.ncbi.nlm.nih.gov/pubmed/).
Summary of BXD linkage and human association of the syntenic locus
| Mouse Chromosome | Phenotype | Max LOD | Human Markers Tested | Maximum Associated Marker | Association q-value | Human Genes |
|---|---|---|---|---|---|---|
| 14 | 11006 | 3.88 | 476 | rs1330469 | 0.0820 | GPC5 |
| 1a | 10144 | 2.72 | 1343 | rs790022 | 0.1360 | EFHD1 |
| ALPI | ||||||
| 10147 | 2.48 | CHRND | ||||
| CHRNG | ||||||
| 2 | 10144 | 2.43 | 635 | rs6077309 | 0.1510 | ANGPT4 |
| RSPO4 | ||||||
| FAM110A | ||||||
| 3 | 10498 | 2.92 | 335 | rs16828127 | 0.2240 | NLGN1 |
| 11c | 10347 | 2.41 | 333 | rs9892427 | 0.2695 | ELAC2 |
| 18b | 10500 | 2.29 | 639 | rs11875845 | 0.3970 | DCC |
| 1b | 10146 | 2.53 | 509 | rs10515988 | 0.4040 | ZCCHC2 |
| 11a | 10078 | 3.36 | 361 | rs9885172 | 0.6060 | SLIT3 |
| 6 | 10042 | 2.91 | 244 | rs2375016 | 0.6230 | SVOP |
| 10 | 10500 | 2.21 | 163 | rs7397470 | 0.6630 | TBK1 |
| XPOT | ||||||
| 18a | 10147 | 2.09 | 704 | RS2684847 | 0.7040 | DTNA |
| 11b | 10042 | 3.89 | 319 | RS9892427 | 0.9800 | GRB7 |
| ERBB2 | ||||||
| NEUROD2 | ||||||
| TCAP | ||||||
| STARD3 | ||||||
| PNMT | ||||||
| PPP1R1B | ||||||
| 13 | 10498 | 2.21 | 154 | rs7716600 | 0.9950 | MRPS30 |
| 10500 | 1.96 | |||||
| 10501 | 1.96 |
All loci with “suggestive” linkage to at least one BXD ethanol-induced ataxia phenotype are listed. The first three columns describe the BXD linkage (see Table 1 to decipher phenotype code). If a mouse chromosome has more than one linkage signal, the loci are differentiated with a letter after the chromosome number. The next four columns describe the association results of the human syntenic locus; q-values refer to the marker. All genes that map within 100 kb of the maximum associated marker are listed.
Figure 2 Drosophila glypican homologs regulate behavioral responses to acute and repeated ethanol exposure. (A) Simplified diagram of the dlp locus. Coding regions are indicated with shaded boxes. The transposon insertion allele dlp is located in the first intron. Probes for qPCR span the last intron. (B) Ethanol-stimulated locomotion of flies homozygous (left) or heterozygous (right) for f03537 continuously exposed to 47% ethanol vapor (0–25 min, bar on horizontal axis). Control in all experiments was the genetic background strain. Statistical significance (two-sample t-test) was assessed by comparison of the total distance traveled during the hyperactive phase (2–25 min). f03537: n = 5, f03537/+: n = 8. (C) Exposure scheme for inducing and detecting ethanol rapid tolerance. Flies were exposed twice to 67% ethanol vapor with 4 hr between the start of exposures 1 and 2. (D) Sedation sensitivity and tolerance of flies heterozygous for f03537. ST50 is the time to 50% sedation, and sedation tolerance is the difference between the ST50 of exposure 2 (e2) and 1 (e1). Sensitivity and sedation are illustrated by the horizontal bar graphs. *P = 0.0206, **P = 0.0022, two-sample t-test. n = 9. (E) Simplified diagram of the dally locus. (F) Ethanol-stimulated locomotion of flies homozygous (left) or heterozygous (right) for MB950 continuously exposed to 47% ethanol vapor (0–25 min). MB950: n = 7, MB950/+: n = 11. (G) Sedation sensitivity and tolerance of flies homozygous for MB950. ***P = 0.0002, two-sample t-test. n = 7. Ethanol absorption was unaltered in dlp (control: 24.6 mM, f03537/+: 24.2 mM, P = 0.8726, two-sample t-test, n = 6) and dally mutant flies (control: 29.5 mM, MB950: 31.7 mM, P = 0.5231, two-sample t-test, n = 4).