Literature DB >> 22375559

Physical microscopic model of proteins under force.

Nikolay V Dokholyan1.   

Abstract

Nature has evolved proteins to counteract forces applied on living cells, and has designed proteins that can sense forces. One can appreciate Nature's ingenuity in evolving these proteins to be highly sensitive to force and to have a high dynamic force range at which they operate. To achieve this level of sensitivity, many of these proteins are composed of multiple domains and linking peptides connecting these domains, each of them having their own force response regimes. Here, using a simple model of a protein, we address the question of how each individual domain responds to force. We also ask how multidomain proteins respond to forces. We find that the end-to-end distance of individual domains under force scales linearly with force. In multidomain proteins, we find that the force response has a rich range: at low force, extension is predominantly governed by "weaker" linking peptides or domain intermediates, while at higher force, the extension is governed by unfolding of individual domains. Overall, the force extension curve comprises multiple sigmoidal transitions governed by unfolding of linking peptides and domains. Our study provides a basic framework for the understanding of protein response to force, and allows for interpretation experiments in which force is used to study the mechanical properties of multidomain proteins.

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Year:  2012        PMID: 22375559      PMCID: PMC3376209          DOI: 10.1021/jp212543m

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  28 in total

Review 1.  Filamins as integrators of cell mechanics and signalling.

Authors:  T P Stossel; J Condeelis; L Cooley; J H Hartwig; A Noegel; M Schleicher; S S Shapiro
Journal:  Nat Rev Mol Cell Biol       Date:  2001-02       Impact factor: 94.444

Review 2.  Structural and functional aspects of filamins.

Authors:  A van der Flier; A Sonnenberg
Journal:  Biochim Biophys Acta       Date:  2001-04-23

3.  Unfolding proteins under external forces: a solvable model under the self-consistent pair contact probability approximation.

Authors:  Tongye Shen; Lawrence S Canino; J Andrew McCammon
Journal:  Phys Rev Lett       Date:  2002-07-22       Impact factor: 9.161

4.  Reverse engineering of the giant muscle protein titin.

Authors:  Hongbin Li; Wolfgang A Linke; Andres F Oberhauser; Mariano Carrion-Vazquez; Jason G Kerkvliet; Hui Lu; Piotr E Marszalek; Julio M Fernandez
Journal:  Nature       Date:  2002-08-29       Impact factor: 49.962

Review 5.  Cell mechanics and the cytoskeleton.

Authors:  Daniel A Fletcher; R Dyche Mullins
Journal:  Nature       Date:  2010-01-28       Impact factor: 49.962

6.  The path of DNA in the kinetochore.

Authors:  Kerry Bloom; Shantanu Sharma; Nikolay V Dokholyan
Journal:  Curr Biol       Date:  2006-04-18       Impact factor: 10.834

7.  Protein folding: then and now.

Authors:  Yiwen Chen; Feng Ding; Huifen Nie; Adrian W Serohijos; Shantanu Sharma; Kyle C Wilcox; Shuangye Yin; Nikolay V Dokholyan
Journal:  Arch Biochem Biophys       Date:  2007-06-08       Impact factor: 4.013

Review 8.  A never-ending love story with elastin: a scientific autobiography.

Authors:  Antonio M Tamburro
Journal:  Nanomedicine (Lond)       Date:  2009-06       Impact factor: 5.307

Review 9.  Actin dynamics: from nanoscale to microscale.

Authors:  Anders E Carlsson
Journal:  Annu Rev Biophys       Date:  2010       Impact factor: 12.981

10.  N-terminal strands of filamin Ig domains act as a conformational switch under biological forces.

Authors:  Barry A Kesner; Feng Ding; Brenda R Temple; Nikolay V Dokholyan
Journal:  Proteins       Date:  2010-01
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