Literature DB >> 12190614

Unfolding proteins under external forces: a solvable model under the self-consistent pair contact probability approximation.

Tongye Shen1, Lawrence S Canino, J Andrew McCammon.   

Abstract

We extend a model of Micheletti et al. [Phys. Rev. Lett. 87, 088102 (2001)]] used to study protein con-formations to the case in which there is an external force field. Under the self-consistent pair contact probability approximation, this residue-level resolution model can still be solved under pulling forces. We implement the algorithm using heterogeneous parameters and study the force-induced unfolding of a helical segment from the protein transformylase and of the beta-stranded domains from the protein titin. The results are qualitatively consistent with the results from more expensive, atomistic dynamics simulation. Despite the mean-field-like approach, we observed a sharp and cooperative unfolding transition.

Entities:  

Mesh:

Substances:

Year:  2002        PMID: 12190614     DOI: 10.1103/PhysRevLett.89.068103

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  5 in total

1.  Dissecting the mechanical unfolding of ubiquitin.

Authors:  Anders Irbäck; Simon Mitternacht; Sandipan Mohanty
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-07       Impact factor: 11.205

2.  Protein flexibility prediction by an all-atom mean-field statistical theory.

Authors:  B P Pandey; Chi Zhang; Xianzhang Yuan; Jian Zi; Yaoqi Zhou
Journal:  Protein Sci       Date:  2005-07       Impact factor: 6.725

3.  Mechanism of titin unfolding by force: insight from quasi-equilibrium molecular dynamics calculations.

Authors:  Germán Pabón; L Mario Amzel
Journal:  Biophys J       Date:  2006-04-21       Impact factor: 4.033

4.  Physical microscopic model of proteins under force.

Authors:  Nikolay V Dokholyan
Journal:  J Phys Chem B       Date:  2012-03-15       Impact factor: 2.991

5.  Dependency map of proteins in the small ribosomal subunit.

Authors:  Kay Hamacher; Joanna Trylska; J Andrew McCammon
Journal:  PLoS Comput Biol       Date:  2006-02-17       Impact factor: 4.475

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.