Literature DB >> 22374910

Formyl-coenzyme A (CoA):oxalate CoA-transferase from the acidophile Acetobacter aceti has a distinctive electrostatic surface and inherent acid stability.

Elwood A Mullins1, Courtney M Starks, Julie A Francois, Lee Sael, Daisuke Kihara, T Joseph Kappock.   

Abstract

Bacterial formyl-CoA:oxalate CoA-transferase (FCOCT) and oxalyl-CoA decarboxylase work in tandem to perform a proton-consuming decarboxylation that has been suggested to have a role in generalized acid resistance. FCOCT is the product of uctB in the acidophilic acetic acid bacterium Acetobacter aceti. As expected for an acid-resistance factor, UctB remains folded at the low pH values encountered in the A. aceti cytoplasm. A comparison of crystal structures of FCOCTs and related proteins revealed few features in UctB that would distinguish it from nonacidophilic proteins and thereby account for its acid stability properties, other than a strikingly featureless electrostatic surface. The apparently neutral surface is a result of a "speckled" charge decoration, in which charged surface residues are surrounded by compensating charges but do not form salt bridges. A quantitative comparison among orthologs identified a pattern of residue substitution in UctB that may be a consequence of selection for protein stability by constant exposure to acetic acid. We suggest that this surface charge pattern, which is a distinctive feature of A. aceti proteins, creates a stabilizing electrostatic network without stiffening the protein or compromising protein-solvent interactions.
Copyright © 2012 The Protein Society.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22374910      PMCID: PMC3403466          DOI: 10.1002/pro.2054

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  58 in total

1.  Increasing protein stability by altering long-range coulombic interactions.

Authors:  G R Grimsley; K L Shaw; L R Fee; R W Alston; B M Huyghues-Despointes; R L Thurlkill; J M Scholtz; C N Pace
Journal:  Protein Sci       Date:  1999-09       Impact factor: 6.725

2.  The finer things in X-ray diffraction data collection.

Authors:  J W Pflugrath
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

Review 3.  Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability.

Authors:  C Vieille; G J Zeikus
Journal:  Microbiol Mol Biol Rev       Date:  2001-03       Impact factor: 11.056

Review 4.  A new family of CoA-transferases.

Authors:  J Heider
Journal:  FEBS Lett       Date:  2001-12-14       Impact factor: 4.124

5.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

6.  ESPript: analysis of multiple sequence alignments in PostScript.

Authors:  P Gouet; E Courcelle; D I Stuart; F Métoz
Journal:  Bioinformatics       Date:  1999-04       Impact factor: 6.937

7.  VADAR: a web server for quantitative evaluation of protein structure quality.

Authors:  Leigh Willard; Anuj Ranjan; Haiyan Zhang; Hassan Monzavi; Robert F Boyko; Brian D Sykes; David S Wishart
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

8.  Formyl-CoA transferase encloses the CoA binding site at the interface of an interlocked dimer.

Authors:  Stefano Ricagno; Stefan Jonsson; Nigel Richards; Ylva Lindqvist
Journal:  EMBO J       Date:  2003-07-01       Impact factor: 11.598

9.  Regulatory network of acid resistance genes in Escherichia coli.

Authors:  Nobuhisa Masuda; George M Church
Journal:  Mol Microbiol       Date:  2003-05       Impact factor: 3.501

10.  Escherichia coli gene expression responsive to levels of the response regulator EvgA.

Authors:  Nobuhisa Masuda; George M Church
Journal:  J Bacteriol       Date:  2002-11       Impact factor: 3.490

View more
  8 in total

1.  Crystal Structure of an Intramolecular Mesaconyl-Coenzyme A Transferase From the 3-Hydroxypropionic Acid Cycle of Roseiflexus castenholzii.

Authors:  Zhenzhen Min; Xin Zhang; Wenping Wu; Yueyong Xin; Menghua Liu; Kangle Wang; Xingwei Zhang; Yun He; Chengpeng Fan; Zhiguo Wang; Xiaoling Xu
Journal:  Front Microbiol       Date:  2022-05-26       Impact factor: 6.064

2.  Redefining the coenzyme A transferase superfamily with a large set of manually annotated proteins.

Authors:  Timothy J Hackmann
Journal:  Protein Sci       Date:  2022-02-07       Impact factor: 6.725

3.  Structure-based functional annotation of hypothetical proteins from Candida dubliniensis: a quest for potential drug targets.

Authors:  Kundan Kumar; Amresh Prakash; Farah Anjum; Asimul Islam; Faizan Ahmad; Md Imtaiyaz Hassan
Journal:  3 Biotech       Date:  2014-10-17       Impact factor: 2.406

4.  Biofilm Mode of Cultivation Leads to an Improvement of the Entomotoxic Patterns of Two Aspergillus Species.

Authors:  Frédéric Francis; Florent Druart; José Diana Di Mavungu; Marthe De Boevre; Sarah De Saeger; Frank Delvigne
Journal:  Microorganisms       Date:  2020-05-11

5.  Structural characterization of HypX responsible for CO biosynthesis in the maturation of NiFe-hydrogenase.

Authors:  Norifumi Muraki; Kentaro Ishii; Susumu Uchiyama; Satoru G Itoh; Hisashi Okumura; Shigetoshi Aono
Journal:  Commun Biol       Date:  2019-10-18

Review 6.  Classification of acetic acid bacteria and their acid resistant mechanism.

Authors:  Xiaoman Qiu; Yao Zhang; Housheng Hong
Journal:  AMB Express       Date:  2021-02-17       Impact factor: 3.298

7.  Leucine-Responsive Regulatory Protein in Acetic Acid Bacteria Is Stable and Functions at a Wide Range of Intracellular pH Levels.

Authors:  Yuri Ishii; Yuki Shige; Naoki Akasaka; Afi Candra Trinugraha; Haruka Higashikubo; Wakao Fukuda; Shinsuke Fujiwara
Journal:  J Bacteriol       Date:  2021-08-20       Impact factor: 3.490

8.  Function and X-ray crystal structure of Escherichia coli YfdE.

Authors:  Elwood A Mullins; Kelly L Sullivan; T Joseph Kappock
Journal:  PLoS One       Date:  2013-07-23       Impact factor: 3.240

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.