Literature DB >> 22356576

A single-site mutation (F429H) converts the enzyme CYP 2B4 into a heme oxygenase: a QM/MM study.

Dandamudi Usharani1, Costantino Zazza, Wenzhen Lai, Mukesh Chourasia, Lucy Waskell, Sason Shaik.   

Abstract

The intriguing deactivation of the cytochrome P450 (CYP) 2B4 enzyme induced by mutation of a single residue, Phe429 to His, is explored by quantum mechanical/molecular mechanical calculations of the O-OH bond activation of the (Fe(3+)OOH)(-) intermediate. It is found that the F429H mutant of CYP 2B4 undergoes homolytic instead of heterolytic O-OH bond cleavage. Thus, the mutant acquires the following characteristics of a heme oxygenase enzyme: (a) donation by His429 of an additional NH---S H-bond to the cysteine ligand combined with the presence of the substrate retards the heterolytic cleavage and gives rise to homolytic O-OH cleavage, and (b) the Thr302/water cluster orients nascent OH(•) and ensures efficient meso hydroxylation.
© 2012 American Chemical Society

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Year:  2012        PMID: 22356576      PMCID: PMC3326604          DOI: 10.1021/ja211905e

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

Review 1.  Autocatalytic radical reactions in physiological prosthetic heme modification.

Authors:  Christophe Colas; Paul R Ortiz de Montellano
Journal:  Chem Rev       Date:  2003-06       Impact factor: 60.622

2.  Probing structure-function relations in heme-containing oxygenases and peroxidases.

Authors:  J H Dawson
Journal:  Science       Date:  1988-04-22       Impact factor: 47.728

3.  Evidence for a homolytic mechanism of peroxide oxygen--oxygen bond cleavage during substrate hydroxylation by cytochrome P-450.

Authors:  R E White; S G Sligar; M J Coon
Journal:  J Biol Chem       Date:  1980-12-10       Impact factor: 5.157

4.  Roles of the axial push effect in cytochrome P450cam studied with the site-directed mutagenesis at the heme proximal site.

Authors:  S Yoshioka; S Takahashi; K Ishimori; I Morishima
Journal:  J Inorg Biochem       Date:  2000-08-31       Impact factor: 4.155

5.  Phenylalanine 393 exerts thermodynamic control over the heme of flavocytochrome P450 BM3.

Authors:  T W Ost; C S Miles; A W Munro; J Murdoch; G A Reid; S K Chapman
Journal:  Biochemistry       Date:  2001-11-13       Impact factor: 3.162

6.  Crystal structure of the carbon monoxide-substrate-cytochrome P-450CAM ternary complex.

Authors:  R Raag; T L Poulos
Journal:  Biochemistry       Date:  1989-09-19       Impact factor: 3.162

7.  The 'push' effect of the thiolate ligand in cytochrome P450: a theoretical gauging.

Authors:  François Ogliaro; Samuël P de Visser; Sason Shaik
Journal:  J Inorg Biochem       Date:  2002-09-20       Impact factor: 4.155

8.  Replacement of active-site cysteine-436 by serine converts cytochrome P450 2B4 into an NADPH oxidase with negligible monooxygenase activity.

Authors:  Kostas P Vatsis; Hwei-Ming Peng; Minor J Coon
Journal:  J Inorg Biochem       Date:  2002-09-20       Impact factor: 4.155

9.  Structure of mammalian cytochrome P450 2B4 complexed with 4-(4-chlorophenyl)imidazole at 1.9-A resolution: insight into the range of P450 conformations and the coordination of redox partner binding.

Authors:  Emily E Scott; Mark A White; You Ai He; Eric F Johnson; C David Stout; James R Halpert
Journal:  J Biol Chem       Date:  2004-04-20       Impact factor: 5.157

10.  Glu318 and Thr319 mutations of cytochrome P450 1A2 remarkably enhance homolytic O-O cleavage of alkyl hydroperoxides. An optical absorption spectral study.

Authors:  T Shimizu; Y Murakami; M Hatano
Journal:  J Biol Chem       Date:  1994-05-06       Impact factor: 5.157

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  11 in total

1.  Effect of the disease-causing R266K mutation on the heme and PLP environments of human cystathionine β-synthase.

Authors:  Aaron T Smith; Yang Su; Daniel J Stevens; Tomas Majtan; Jan P Kraus; Judith N Burstyn
Journal:  Biochemistry       Date:  2012-07-31       Impact factor: 3.162

Review 2.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

3.  Oriented electric fields as future smart reagents in chemistry.

Authors:  Sason Shaik; Debasish Mandal; Rajeev Ramanan
Journal:  Nat Chem       Date:  2016-11-22       Impact factor: 24.427

4.  Role of the Proximal Cysteine Hydrogen Bonding Interaction in Cytochrome P450 2B4 Studied by Cryoreduction, Electron Paramagnetic Resonance, and Electron-Nuclear Double Resonance Spectroscopy.

Authors:  Roman Davydov; Sangchoul Im; Muralidharan Shanmugam; William A Gunderson; Naw May Pearl; Brian M Hoffman; Lucy Waskell
Journal:  Biochemistry       Date:  2016-02-03       Impact factor: 3.162

Review 5.  Oxygen Activation and Radical Transformations in Heme Proteins and Metalloporphyrins.

Authors:  Xiongyi Huang; John T Groves
Journal:  Chem Rev       Date:  2017-12-29       Impact factor: 60.622

6.  Experimental documentation of the structural consequences of hydrogen-bonding interactions to the proximal cysteine of a cytochrome P450.

Authors:  Piotr J Mak; Yuting Yang; Sangchoul Im; Lucy A Waskell; James R Kincaid
Journal:  Angew Chem Int Ed Engl       Date:  2012-09-11       Impact factor: 15.336

7.  How Do Perfluorinated Alkanoic Acids Elicit Cytochrome P450 to Catalyze Methane Hydroxylation? An MD and QM/MM Study.

Authors:  Chunsen Li; Sason Shaik
Journal:  RSC Adv       Date:  2013-03-07       Impact factor: 3.361

8.  Structural and functional characterization of a cytochrome P450 2B4 F429H mutant with an axial thiolate-histidine hydrogen bond.

Authors:  Yuting Yang; Haoming Zhang; Dandamudi Usharani; Weishu Bu; Sangchoul Im; Michael Tarasev; Freeborn Rwere; Naw May Pearl; Jennifer Meagher; Cuthbert Sun; Jeanne Stuckey; Sason Shaik; Lucy Waskell
Journal:  Biochemistry       Date:  2014-07-31       Impact factor: 3.162

9.  F429 Regulation of Tunnels in Cytochrome P450 2B4: A Top Down Study of Multiple Molecular Dynamics Simulations.

Authors:  Giordano Mancini; Costantino Zazza
Journal:  PLoS One       Date:  2015-09-28       Impact factor: 3.240

Review 10.  Applications of density functional theory to iron-containing molecules of bioinorganic interest.

Authors:  Hajime Hirao; Nandun Thellamurege; Xi Zhang
Journal:  Front Chem       Date:  2014-04-29       Impact factor: 5.221

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