Literature DB >> 12237222

The 'push' effect of the thiolate ligand in cytochrome P450: a theoretical gauging.

François Ogliaro1, Samuël P de Visser, Sason Shaik.   

Abstract

The 'push' effect of the thiolate ligand in cytochrome P450 is investigated using density functional calculations. Theory supports Dawson's postulate that the 'push' effect is crucial for the heterolytic O-O bond cleavage of ferric-peroxide, as well as for controlling the Fe(III)/Fe(II) redox process and gating the catalytic cycle. Two energetic factors that contribute to the 'push' effect are revealed. The dominant one is the field factor (DeltaE(field)=54-103 kcal/mol) that accounts for the classical electrostatic repulsion with the negative charge of thiolate. The smaller factor is a quantum mechanical effect (DeltaE(QM)(sigma)=39 kcal/mol, DeltaE(QM)(pi)=4 kcal/mol), which is associated with the sigma- and pi-donor capabilities of thiolate. The effects of ligand replacement, changes in hydrogen bonding and dielectric screening are discussed in term of these quantities. In an environment with a dielectric constant of 5.7, the total 'push' effect is reduced to 29-33 kcal/mol. Manifestations of the 'push' effect on other properties of thiolate enzymes are discussed.

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Year:  2002        PMID: 12237222     DOI: 10.1016/s0162-0134(02)00437-3

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  21 in total

1.  Sulfur versus iron oxidation in an iron-thiolate model complex.

Authors:  Aidan R McDonald; Michael R Bukowski; Erik R Farquhar; Timothy A Jackson; Kevin D Koehntop; Mi Sook Seo; Raymond F De Hont; Audria Stubna; Jason A Halfen; Eckard Münck; Wonwoo Nam; Lawrence Que
Journal:  J Am Chem Soc       Date:  2010-11-11       Impact factor: 15.419

2.  Axial ligand tuning of a nonheme iron(IV)-oxo unit for hydrogen atom abstraction.

Authors:  Chivukula V Sastri; Jimin Lee; Kyungeun Oh; Yoon Jin Lee; Junghyun Lee; Timothy A Jackson; Kallol Ray; Hajime Hirao; Woonsup Shin; Jason A Halfen; Jinheung Kim; Lawrence Que; Sason Shaik; Wonwoo Nam
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-28       Impact factor: 11.205

Review 3.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

4.  X-ray Absorption and Emission Study of Dioxygen Activation by a Small-Molecule Manganese Complex.

Authors:  Julian A Rees; Vlad Martin-Diaconescu; Julie A Kovacs; Serena DeBeer
Journal:  Inorg Chem       Date:  2015-06-10       Impact factor: 5.165

5.  Role of the Proximal Cysteine Hydrogen Bonding Interaction in Cytochrome P450 2B4 Studied by Cryoreduction, Electron Paramagnetic Resonance, and Electron-Nuclear Double Resonance Spectroscopy.

Authors:  Roman Davydov; Sangchoul Im; Muralidharan Shanmugam; William A Gunderson; Naw May Pearl; Brian M Hoffman; Lucy Waskell
Journal:  Biochemistry       Date:  2016-02-03       Impact factor: 3.162

6.  The intrinsic axial ligand effect on propene oxidation by horseradish peroxidase versus cytochrome P450 enzymes.

Authors:  Devesh Kumar; Sam P de Visser; Pankaz K Sharma; Etienne Derat; Sason Shaik
Journal:  J Biol Inorg Chem       Date:  2005-02-19       Impact factor: 3.358

Review 7.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

8.  Influence of the nitrogen donors on nonheme iron models of superoxide reductase: high-spin Fe(III)-OOR complexes.

Authors:  Frances Namuswe; Takahiro Hayashi; Yunbo Jiang; Gary D Kasper; Amy A Narducci Sarjeant; Pierre Moënne-Loccoz; David P Goldberg
Journal:  J Am Chem Soc       Date:  2010-01-13       Impact factor: 15.419

9.  Stabilization and characterization of a heme-oxy reaction intermediate in inducible nitric-oxide synthase.

Authors:  Jesús Tejero; Ashis Biswas; Zhi-Qiang Wang; Richard C Page; Mohammad Mahfuzul Haque; Craig Hemann; Jay L Zweier; Saurav Misra; Dennis J Stuehr
Journal:  J Biol Chem       Date:  2008-09-24       Impact factor: 5.157

10.  The nature of the high-valent complexes in the catalytic cycles of hemoproteins.

Authors:  Radu Silaghi-Dumitrescu
Journal:  J Biol Inorg Chem       Date:  2004-04-23       Impact factor: 3.358

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