Literature DB >> 22353782

Structural neurobiology: missing link to a mechanistic understanding of neural computation.

Winfried Denk1, Kevin L Briggman, Moritz Helmstaedter.   

Abstract

High-resolution, comprehensive structural information is often the final arbiter between competing mechanistic models of biological processes, and can serve as inspiration for new hypotheses. In molecular biology, definitive structural data at atomic resolution are available for many macromolecules; however, information about the structure of the brain is much less complete, both in scope and resolution. Several technical developments over the past decade, such as serial block-face electron microscopy and trans-synaptic viral tracing, have made the structural biology of neural circuits conceivable: we may be able to obtain the structural information needed to reconstruct the network of cellular connections for large parts of, or even an entire, mouse brain within a decade or so. Given that the brain's algorithms are ultimately encoded by this network, knowing where all of these connections are should, at the very least, provide the data needed to distinguish between models of neural computation.

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Mesh:

Year:  2012        PMID: 22353782     DOI: 10.1038/nrn3169

Source DB:  PubMed          Journal:  Nat Rev Neurosci        ISSN: 1471-003X            Impact factor:   34.870


  72 in total

Review 1.  How ribosomes make peptide bonds.

Authors:  Marina V Rodnina; Malte Beringer; Wolfgang Wintermeyer
Journal:  Trends Biochem Sci       Date:  2006-12-08       Impact factor: 13.807

Review 2.  The blue brain project.

Authors:  Henry Markram
Journal:  Nat Rev Neurosci       Date:  2006-02       Impact factor: 34.870

3.  Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling.

Authors:  Graham Knott; Herschel Marchman; David Wall; Ben Lich
Journal:  J Neurosci       Date:  2008-03-19       Impact factor: 6.167

4.  Two-photon calcium imaging of evoked activity from L5 somatosensory neurons in vivo.

Authors:  Wolfgang Mittmann; Damian J Wallace; Uwe Czubayko; Jan T Herb; Andreas T Schaefer; Loren L Looger; Winfried Denk; Jason N D Kerr
Journal:  Nat Neurosci       Date:  2011-07-10       Impact factor: 24.884

5.  Ultrastructural analysis of hippocampal neuropil from the connectomics perspective.

Authors:  Yuriy Mishchenko; Tao Hu; Josef Spacek; John Mendenhall; Kristen M Harris; Dmitri B Chklovskii
Journal:  Neuron       Date:  2010-09-23       Impact factor: 17.173

Review 6.  General anesthesia, sleep, and coma.

Authors:  Emery N Brown; Ralph Lydic; Nicholas D Schiff
Journal:  N Engl J Med       Date:  2010-12-30       Impact factor: 91.245

7.  Neuropeptide feedback modifies odor-evoked dynamics in Caenorhabditis elegans olfactory neurons.

Authors:  Sreekanth H Chalasani; Saul Kato; Dirk R Albrecht; Takao Nakagawa; L F Abbott; Cornelia I Bargmann
Journal:  Nat Neurosci       Date:  2010-04-04       Impact factor: 24.884

8.  Synaptic strength of individual spines correlates with bound Ca2+-calmodulin-dependent kinase II.

Authors:  Brent Asrican; John Lisman; Nikolai Otmakhov
Journal:  J Neurosci       Date:  2007-12-19       Impact factor: 6.167

9.  Lead aspartate, an en bloc contrast stain particularly useful for ultrastructural enzymology.

Authors:  J Walton
Journal:  J Histochem Cytochem       Date:  1979-10       Impact factor: 2.479

10.  Transfection via whole-cell recording in vivo: bridging single-cell physiology, genetics and connectomics.

Authors:  Ede A Rancz; Kevin M Franks; Martin K Schwarz; Bruno Pichler; Andreas T Schaefer; Troy W Margrie
Journal:  Nat Neurosci       Date:  2011-02-20       Impact factor: 24.884

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  80 in total

1.  Rapid specimen preparation to improve the throughput of electron microscopic volume imaging for three-dimensional analyses of subcellular ultrastructures with serial block-face scanning electron microscopy.

Authors:  Truc Quynh Thai; Huy Bang Nguyen; Sei Saitoh; Bao Wu; Yurika Saitoh; Satoshi Shimo; Yaser Hosny Ali Elewa; Osamu Ichii; Yasuhiro Kon; Takashi Takaki; Kensuke Joh; Nobuhiko Ohno
Journal:  Med Mol Morphol       Date:  2016-02-11       Impact factor: 2.309

Review 2.  Molecular neuroanatomy: a generation of progress.

Authors:  Jonathan D Pollock; Da-Yu Wu; John S Satterlee
Journal:  Trends Neurosci       Date:  2013-12-31       Impact factor: 13.837

3.  Making sense of brain network data.

Authors:  Olaf Sporns
Journal:  Nat Methods       Date:  2013-06       Impact factor: 28.547

4.  Connectomic reconstruction of the inner plexiform layer in the mouse retina.

Authors:  Moritz Helmstaedter; Kevin L Briggman; Srinivas C Turaga; Viren Jain; H Sebastian Seung; Winfried Denk
Journal:  Nature       Date:  2013-08-08       Impact factor: 49.962

5.  Volumetric imaging and quantification of cytoarchitecture and myeloarchitecture with intrinsic scattering contrast.

Authors:  Conor Leahy; Harsha Radhakrishnan; Vivek J Srinivasan
Journal:  Biomed Opt Express       Date:  2013-09-05       Impact factor: 3.732

6.  Cellular connectomes as arbiters of local circuit models in the cerebral cortex.

Authors:  Emmanuel Klinger; Alessandro Motta; Carsten Marr; Fabian J Theis; Moritz Helmstaedter
Journal:  Nat Commun       Date:  2021-05-13       Impact factor: 14.919

7.  High-resolution whole-brain staining for electron microscopic circuit reconstruction.

Authors:  Shawn Mikula; Winfried Denk
Journal:  Nat Methods       Date:  2015-04-13       Impact factor: 28.547

Review 8.  Cerebral cartography and connectomics.

Authors:  Olaf Sporns
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-05-19       Impact factor: 6.237

9.  Targeted photostimulation uncovers circuit motifs supporting short-term memory.

Authors:  Kayvon Daie; Karel Svoboda; Shaul Druckmann
Journal:  Nat Neurosci       Date:  2021-01-25       Impact factor: 24.884

Review 10.  Connectomics of synaptic microcircuits: lessons from the outer retina.

Authors:  Luke Edward Rogerson; Christian Behrens; Thomas Euler; Philipp Berens; Timm Schubert
Journal:  J Physiol       Date:  2017-05-04       Impact factor: 5.182

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