Literature DB >> 22347142

Ethyl 4-cyano-7-nitro-1,2,3,3a,4,5-hexa-hydro-pyrrolo-[1,2-a]quinoline-4-carboxyl-ate.

Yvon Bibila Mayaya Bisseyou, Adéyolé Timotou, Ajouby Adjou, Rita Kakou-Yao, Jules Tenon Abodou.   

Abstract

In the title compound, C(16)H(17)N(3)O(4), the six-membered N-containing ring adopts a half-chair conformation. One C atom of the five-membered ring is disordered over two sites, with occupancy factors of ca 0.67 and 0.33. The major pyrroline component adopts a half-chair conformation. Inter-molecular C-H⋯O hydrogen bonds forming centrosymmetric dimers are observed in the crystal.

Entities:  

Year:  2012        PMID: 22347142      PMCID: PMC3275286          DOI: 10.1107/S1600536812003480

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of tricyclic quinoline derivatives, see: Dalla Via et al. (2008 ▶); Gasparotto et al. (2006 ▶); Ferlin et al. (2000 ▶). For the crystal structure of an inter­mediate compound, see: Yapo, Konan et al. (2010 ▶). For a closely related crystal structure, see: Yapo, Abou et al. (2010 ▶). For ring conformation analysis, see: Cremer & Pople (1975 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H17N3O4 M = 315.33 Triclinic, a = 7.2292 (2) Å b = 9.1589 (3) Å c = 11.8243 (5) Å α = 79.332 (1)° β = 82.609 (1)° γ = 80.429 (2)° V = 754.79 (5) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 223 K 0.25 × 0.20 × 0.15 mm

Data collection

Nonius KappaCCD area-detector diffractometer 9677 measured reflections 3879 independent reflections 2498 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.083 wR(F 2) = 0.247 S = 1.17 3879 reflections 214 parameters 12 restraints H-atom parameters constrained Δρmax = 0.75 e Å−3 Δρmin = −0.61 e Å−3 Data collection: COLLECT (Nonius, 2001 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812003480/wn2466sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812003480/wn2466Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812003480/wn2466Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H17N3O4Z = 2
Mr = 315.33F(000) = 332
Triclinic, P1Dx = 1.387 Mg m3
a = 7.2292 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.1589 (3) ÅCell parameters from 9677 reflections
c = 11.8243 (5) Åθ = 1.8–29.2°
α = 79.332 (1)°µ = 0.10 mm1
β = 82.609 (1)°T = 223 K
γ = 80.429 (2)°Prism, yellow
V = 754.79 (5) Å30.25 × 0.20 × 0.15 mm
Nonius KappaCCD area-detector diffractometer2498 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.049
graphiteθmax = 29.2°, θmin = 1.8°
φ and ω scansh = 0→9
9677 measured reflectionsk = −11→12
3879 independent reflectionsl = −15→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.083H-atom parameters constrained
wR(F2) = 0.247w = 1/[σ2(Fo2) + (0.1394P)2 + 0.0744P] where P = (Fo2 + 2Fc2)/3
S = 1.17(Δ/σ)max < 0.001
3879 reflectionsΔρmax = 0.75 e Å3
214 parametersΔρmin = −0.61 e Å3
12 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.38 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.2977 (3)0.58327 (19)0.70594 (15)0.0351 (5)
C10.2805 (3)0.4588 (3)0.80197 (18)0.0412 (6)
H1A0.39810.39080.80920.049*
H1B0.18080.40320.79470.049*
C2A0.2298 (6)0.5486 (4)0.9047 (3)0.0419 (8)0.672 (5)
H2A10.09530.58270.91460.050*0.672 (5)
H2A20.26760.48650.97610.050*0.672 (5)
C2B0.3452 (12)0.5011 (9)0.9026 (6)0.0419 (8)0.328 (5)
H2B10.47350.45370.91340.050*0.328 (5)
H2B20.26420.47190.97240.050*0.328 (5)
C50.2756 (3)0.5797 (2)0.59352 (17)0.0308 (5)
C80.2277 (3)0.5789 (3)0.36579 (18)0.0367 (5)
O3−0.0755 (2)0.8596 (2)0.64410 (15)0.0488 (5)
C70.2484 (3)0.7115 (3)0.39876 (18)0.0365 (5)
H70.24510.79940.34460.044*
C100.2506 (3)0.4473 (2)0.55766 (19)0.0352 (5)
H100.25040.35910.61120.042*
C40.3558 (3)0.7113 (2)0.74133 (18)0.0348 (5)
H40.49040.71050.71590.042*
C110.2999 (3)0.8593 (2)0.54725 (18)0.0369 (5)
H11A0.22160.94200.50430.044*
H11B0.43020.87520.52730.044*
O4−0.0134 (2)0.8945 (2)0.81674 (14)0.0480 (5)
O10.1913 (3)0.4596 (2)0.21612 (16)0.0595 (6)
C60.2741 (3)0.7141 (2)0.51212 (17)0.0326 (5)
N20.2021 (3)0.5793 (3)0.24618 (17)0.0465 (5)
O20.1926 (4)0.6986 (2)0.17861 (16)0.0722 (7)
C120.2475 (3)0.8588 (2)0.67809 (17)0.0332 (5)
C90.2265 (3)0.4462 (3)0.4446 (2)0.0375 (5)
H90.20970.35820.42120.045*
C140.0328 (3)0.8707 (2)0.70870 (18)0.0344 (5)
N30.3742 (3)1.0864 (2)0.72921 (19)0.0522 (6)
C130.3147 (3)0.9878 (3)0.70977 (19)0.0389 (5)
C30.3340 (4)0.6763 (3)0.8734 (2)0.0485 (6)
H3A0.45660.65120.90280.058*
H3B0.26510.76230.90530.058*
C15−0.2116 (4)0.8961 (3)0.8615 (2)0.0541 (7)
H15A−0.25590.80640.84950.065*
H15B−0.28800.98310.82190.065*
C16−0.2252 (5)0.9021 (4)0.9866 (3)0.0725 (9)
H16A−0.13790.82201.02320.109*
H16B−0.35110.89141.02070.109*
H16C−0.19530.99680.99690.109*
U11U22U33U12U13U23
N10.0446 (11)0.0312 (9)0.0282 (9)−0.0060 (7)−0.0043 (7)−0.0011 (7)
C10.0448 (13)0.0414 (12)0.0345 (12)−0.0088 (10)−0.0089 (9)0.0067 (9)
C2A0.0446 (19)0.0502 (19)0.0286 (14)−0.0076 (16)−0.0043 (15)0.0000 (13)
C2B0.0446 (19)0.0502 (19)0.0286 (14)−0.0076 (16)−0.0043 (15)0.0000 (13)
C50.0278 (10)0.0339 (10)0.0285 (10)−0.0011 (8)−0.0013 (8)−0.0037 (8)
C80.0303 (11)0.0500 (13)0.0301 (11)−0.0029 (9)−0.0021 (8)−0.0110 (9)
O30.0427 (10)0.0580 (11)0.0475 (10)−0.0053 (8)−0.0129 (8)−0.0095 (8)
C70.0353 (11)0.0414 (11)0.0299 (11)−0.0042 (9)−0.0003 (8)−0.0014 (8)
C100.0342 (11)0.0329 (10)0.0366 (11)−0.0028 (8)−0.0001 (9)−0.0054 (8)
C40.0345 (11)0.0350 (11)0.0345 (11)−0.0019 (8)−0.0063 (8)−0.0058 (8)
C110.0454 (12)0.0344 (11)0.0299 (11)−0.0104 (9)−0.0007 (9)−0.0006 (8)
O40.0382 (9)0.0667 (11)0.0412 (9)−0.0079 (8)−0.0005 (7)−0.0168 (8)
O10.0681 (13)0.0687 (13)0.0492 (11)−0.0066 (10)−0.0115 (9)−0.0284 (9)
C60.0319 (10)0.0356 (11)0.0294 (10)−0.0054 (8)−0.0015 (8)−0.0041 (8)
N20.0432 (11)0.0633 (14)0.0342 (10)−0.0040 (10)−0.0055 (8)−0.0141 (9)
O20.1117 (19)0.0696 (13)0.0376 (11)−0.0166 (12)−0.0238 (11)−0.0003 (9)
C120.0382 (11)0.0316 (10)0.0304 (10)−0.0066 (8)−0.0027 (8)−0.0059 (8)
C90.0331 (11)0.0392 (11)0.0420 (12)−0.0027 (9)−0.0024 (9)−0.0150 (9)
C140.0383 (11)0.0293 (10)0.0346 (11)−0.0034 (8)−0.0051 (9)−0.0033 (8)
N30.0609 (14)0.0443 (12)0.0561 (14)−0.0191 (10)−0.0045 (10)−0.0106 (10)
C130.0408 (12)0.0392 (12)0.0365 (12)−0.0057 (9)−0.0052 (9)−0.0049 (9)
C30.0611 (16)0.0466 (13)0.0353 (12)0.0052 (11)−0.0143 (11)−0.0053 (10)
C150.0392 (14)0.0663 (17)0.0566 (16)−0.0072 (12)0.0027 (11)−0.0148 (13)
C160.0599 (19)0.098 (2)0.0578 (18)−0.0145 (17)0.0146 (14)−0.0208 (17)
N1—C51.366 (3)C4—C31.528 (3)
N1—C41.455 (3)C4—C121.556 (3)
N1—C11.461 (3)C4—H40.9800
C1—C2B1.470 (7)C11—C61.510 (3)
C1—C2A1.562 (4)C11—C121.544 (3)
C1—H1A0.9700C11—H11A0.9700
C1—H1B0.9700C11—H11B0.9700
C2A—C31.461 (4)O4—C141.327 (3)
C2A—H2A10.9700O4—C151.461 (3)
C2A—H2A20.9700O1—N21.231 (3)
C2B—C31.568 (8)N2—O21.226 (3)
C2B—H2B10.9700C12—C131.475 (3)
C2B—H2B20.9700C12—C141.538 (3)
C5—C101.402 (3)C9—H90.9300
C5—C61.415 (3)N3—C131.133 (3)
C8—C71.379 (3)C3—H3A0.9700
C8—C91.389 (3)C3—H3B0.9700
C8—N21.449 (3)C15—C161.480 (4)
O3—C141.190 (3)C15—H15A0.9700
C7—C61.382 (3)C15—H15B0.9700
C7—H70.9300C16—H16A0.9600
C10—C91.373 (3)C16—H16B0.9600
C10—H100.9300C16—H16C0.9600
C5—N1—C4122.46 (16)C6—C11—H11B109.2
C5—N1—C1125.17 (17)C12—C11—H11B109.2
C4—N1—C1112.23 (16)H11A—C11—H11B107.9
N1—C1—C2B107.2 (3)C14—O4—C15116.71 (18)
N1—C1—C2A99.7 (2)C7—C6—C5119.03 (19)
C2B—C1—C2A33.3 (3)C7—C6—C11119.84 (18)
N1—C1—H1A111.8C5—C6—C11121.13 (18)
C2B—C1—H1A79.1O2—N2—O1122.4 (2)
C2A—C1—H1A111.8O2—N2—C8118.9 (2)
N1—C1—H1B111.8O1—N2—C8118.7 (2)
C2B—C1—H1B132.2C13—C12—C14109.33 (18)
C2A—C1—H1B111.8C13—C12—C11108.76 (17)
H1A—C1—H1B109.6C14—C12—C11110.85 (17)
C3—C2A—C1105.5 (2)C13—C12—C4108.75 (17)
C3—C2A—H2A1110.6C14—C12—C4112.53 (16)
C1—C2A—H2A1110.6C11—C12—C4106.51 (17)
C3—C2A—H2A2110.6C10—C9—C8118.7 (2)
C1—C2A—H2A2110.6C10—C9—H9120.6
H2A1—C2A—H2A2108.8C8—C9—H9120.6
C1—C2B—C3104.8 (5)O3—C14—O4125.2 (2)
C1—C2B—H2B1110.8O3—C14—C12124.4 (2)
C3—C2B—H2B1110.8O4—C14—C12110.42 (17)
C1—C2B—H2B2110.8N3—C13—C12176.2 (3)
C3—C2B—H2B2110.8C2A—C3—C4106.2 (2)
H2B1—C2B—H2B2108.9C2A—C3—C2B33.3 (3)
N1—C5—C10121.69 (18)C4—C3—C2B104.6 (3)
N1—C5—C6118.85 (18)C2A—C3—H3A110.5
C10—C5—C6119.45 (18)C4—C3—H3A110.5
C7—C8—C9121.76 (19)C2B—C3—H3A80.7
C7—C8—N2118.9 (2)C2A—C3—H3B110.5
C9—C8—N2119.3 (2)C4—C3—H3B110.5
C8—C7—C6120.1 (2)C2B—C3—H3B136.8
C8—C7—H7119.9H3A—C3—H3B108.7
C6—C7—H7119.9O4—C15—C16107.2 (2)
C9—C10—C5120.9 (2)O4—C15—H15A110.3
C9—C10—H10119.5C16—C15—H15A110.3
C5—C10—H10119.5O4—C15—H15B110.3
N1—C4—C3104.31 (17)C16—C15—H15B110.3
N1—C4—C12109.20 (16)H15A—C15—H15B108.5
C3—C4—C12119.69 (19)C15—C16—H16A109.5
N1—C4—H4107.7C15—C16—H16B109.5
C3—C4—H4107.7H16A—C16—H16B109.5
C12—C4—H4107.7C15—C16—H16C109.5
C6—C11—C12112.16 (16)H16A—C16—H16C109.5
C6—C11—H11A109.2H16B—C16—H16C109.5
C12—C11—H11A109.2
C5—N1—C1—C2B170.8 (4)C6—C11—C12—C13167.79 (18)
C4—N1—C1—C2B−4.9 (4)C6—C11—C12—C14−72.0 (2)
C5—N1—C1—C2A−155.8 (2)C6—C11—C12—C450.7 (2)
C4—N1—C1—C2A28.5 (3)N1—C4—C12—C13−177.03 (18)
N1—C1—C2A—C3−34.5 (3)C3—C4—C12—C1363.0 (3)
C2B—C1—C2A—C372.1 (6)N1—C4—C12—C1461.7 (2)
N1—C1—C2B—C319.3 (6)C3—C4—C12—C14−58.3 (3)
C2A—C1—C2B—C3−62.0 (5)N1—C4—C12—C11−60.0 (2)
C4—N1—C5—C10169.18 (19)C3—C4—C12—C11−179.95 (19)
C1—N1—C5—C10−6.1 (3)C5—C10—C9—C80.1 (3)
C4—N1—C5—C6−12.2 (3)C7—C8—C9—C10−1.4 (3)
C1—N1—C5—C6172.52 (19)N2—C8—C9—C10−179.92 (18)
C9—C8—C7—C61.8 (3)C15—O4—C14—O34.6 (3)
N2—C8—C7—C6−179.62 (19)C15—O4—C14—C12−175.16 (19)
N1—C5—C10—C9179.25 (19)C13—C12—C14—O3130.1 (2)
C6—C5—C10—C90.6 (3)C11—C12—C14—O310.2 (3)
C5—N1—C4—C3172.03 (19)C4—C12—C14—O3−108.9 (2)
C1—N1—C4—C3−12.1 (2)C13—C12—C14—O4−50.1 (2)
C5—N1—C4—C1243.0 (3)C11—C12—C14—O4−169.98 (16)
C1—N1—C4—C12−141.17 (18)C4—C12—C14—O470.9 (2)
C8—C7—C6—C5−1.0 (3)C14—C12—C13—N3−151 (4)
C8—C7—C6—C11179.0 (2)C11—C12—C13—N3−29 (4)
N1—C5—C6—C7−178.85 (19)C4—C12—C13—N386 (4)
C10—C5—C6—C7−0.2 (3)C1—C2A—C3—C428.8 (3)
N1—C5—C6—C111.1 (3)C1—C2A—C3—C2B−63.2 (5)
C10—C5—C6—C11179.78 (19)N1—C4—C3—C2A−11.4 (3)
C12—C11—C6—C7157.10 (19)C12—C4—C3—C2A111.1 (3)
C12—C11—C6—C5−22.9 (3)N1—C4—C3—C2B23.2 (4)
C7—C8—N2—O2−2.7 (3)C12—C4—C3—C2B145.6 (4)
C9—C8—N2—O2175.9 (2)C1—C2B—C3—C2A71.0 (6)
C7—C8—N2—O1177.1 (2)C1—C2B—C3—C4−26.4 (6)
C9—C8—N2—O1−4.3 (3)C14—O4—C15—C16172.0 (2)
D—H···AD—HH···AD···AD—H···A
C11—H11A···O3i0.972.483.432 (3)167.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C11—H11A⋯O3i0.972.483.432 (3)167

Symmetry code: (i) .

  7 in total

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Authors:  Venusia Gasparotto; Ignazio Castagliuolo; Gianfranco Chiarelotto; Vincenzo Pezzi; Daniela Montanaro; Paola Brun; Giorgio Palù; Giampietro Viola; Maria Grazia Ferlin
Journal:  J Med Chem       Date:  2006-03-23       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
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3.  Pyrrolo-quinoline derivatives as potential antineoplastic drugs.

Authors:  M G Ferlin; B Gatto; G Chiarelotto; M Palumbo
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4.  Discovery of a new anilino-3H-pyrrolo[3,2-f]quinoline derivative as potential anti-cancer agent.

Authors:  L Dalla Via; O Gia; V Gasparotto; M G Ferlin
Journal:  Eur J Med Chem       Date:  2007-05-06       Impact factor: 6.514

5.  (E)-Ethyl 2-cyano-3-[5-nitro-2-(pyrrolidin-1-yl)phen-yl]acrylate.

Authors:  Yapi Marcellin Yapo; Bakary Coulibaly Abou; Ané Adjou; Rita Kakou-Yao; Jules A Tenon
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-04

6.  Ethyl 5-cyano-8-nitro-2,3,4,4a,5,6-hexahydro-1H-pyrido[1,2-a]quinoline-5-carboxylate.

Authors:  Yapi Marcellin Yapo; Kouakou Michel Konan; Ané Adjou; Adéyolé Timotou; Jules A Tenon
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-23

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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