| Literature DB >> 21754766 |
A Jahubar Ali, S Athimoolam, S Asath Bahadur.
Abstract
THE CRYSTAL STRUCTURE OF THE TITLE COMPOUND (SYSTEMATIC NAME: 2-amino-1-methyl-4-oxo-4,5-dihydro-1H-imidazol-3-ium 3-phenyl-prop-2-enoate), C(4)Entities:
Year: 2011 PMID: 21754766 PMCID: PMC3120415 DOI: 10.1107/S1600536811016916
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H8N3O+·C9H7O2− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3849 reflections |
| θ = 2.1–24.5° | |
| µ = 0.10 mm−1 | |
| β = 104.578 (2)° | Block, colourless |
| 0.25 × 0.22 × 0.18 mm | |
| Bruker SMART APEX CCD area-detector diffractometer | 2037 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 25.0°, θmin = 2.3° |
| ω scans | |
| 9014 measured reflections | |
| 2250 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2250 reflections | Δρmax = 0.16 e Å−3 |
| 186 parameters | Δρmin = −0.14 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.047 (4) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C11 | 0.90518 (15) | −0.14215 (12) | 0.42786 (10) | 0.0444 (3) | |
| C12 | 0.82555 (14) | −0.03500 (11) | 0.37734 (10) | 0.0425 (3) | |
| H12 | 0.8449 | −0.0046 | 0.3142 | 0.051* | |
| C13 | 0.72755 (15) | 0.01743 (12) | 0.42137 (10) | 0.0465 (3) | |
| H13 | 0.7159 | −0.0168 | 0.4853 | 0.056* | |
| C14 | 0.63452 (14) | 0.12096 (11) | 0.38527 (10) | 0.0431 (3) | |
| C15 | 0.61909 (16) | 0.17391 (12) | 0.28495 (11) | 0.0501 (3) | |
| H15 | 0.6716 | 0.1446 | 0.2368 | 0.060* | |
| C16 | 0.52597 (19) | 0.26999 (14) | 0.25656 (13) | 0.0620 (4) | |
| H16 | 0.5149 | 0.3046 | 0.1887 | 0.074* | |
| C17 | 0.44942 (18) | 0.31527 (14) | 0.32702 (14) | 0.0627 (4) | |
| H17 | 0.3885 | 0.3813 | 0.3076 | 0.075* | |
| C18 | 0.46263 (19) | 0.26350 (16) | 0.42554 (14) | 0.0685 (5) | |
| H18 | 0.4099 | 0.2934 | 0.4733 | 0.082* | |
| C19 | 0.55385 (19) | 0.16718 (15) | 0.45395 (12) | 0.0616 (4) | |
| H19 | 0.5618 | 0.1319 | 0.5212 | 0.074* | |
| C5 | 0.88984 (14) | 0.38873 (11) | 0.37801 (10) | 0.0404 (3) | |
| C3 | 0.78741 (16) | 0.45605 (12) | 0.50957 (11) | 0.0490 (3) | |
| C2 | 0.74062 (17) | 0.53562 (12) | 0.41229 (11) | 0.0514 (4) | |
| H2A | 0.6319 | 0.5368 | 0.3846 | 0.062* | |
| H2B | 0.7763 | 0.6155 | 0.4299 | 0.062* | |
| C1 | 0.8109 (2) | 0.53413 (16) | 0.23096 (13) | 0.0705 (5) | |
| H1A | 0.8739 | 0.6030 | 0.2417 | 0.106* | |
| H1B | 0.7096 | 0.5559 | 0.1944 | 0.106* | |
| H1C | 0.8481 | 0.4779 | 0.1875 | 0.106* | |
| N1 | 0.81251 (13) | 0.48238 (10) | 0.33492 (9) | 0.0477 (3) | |
| N4 | 0.87699 (13) | 0.37178 (10) | 0.48180 (9) | 0.0445 (3) | |
| N5 | 0.96941 (14) | 0.32061 (11) | 0.33272 (10) | 0.0490 (3) | |
| O11 | 0.99961 (12) | −0.18945 (8) | 0.38395 (8) | 0.0530 (3) | |
| O12 | 0.87297 (14) | −0.18107 (10) | 0.51056 (9) | 0.0711 (4) | |
| O1 | 0.75459 (15) | 0.46421 (10) | 0.59527 (9) | 0.0710 (4) | |
| H4 | 0.9161 (18) | 0.3101 (15) | 0.5239 (14) | 0.060 (5)* | |
| H5A | 0.9778 (18) | 0.3305 (14) | 0.2643 (15) | 0.058 (4)* | |
| H5B | 1.0243 (19) | 0.2638 (16) | 0.3789 (15) | 0.066 (5)* |
| C11 | 0.0542 (7) | 0.0438 (7) | 0.0369 (6) | 0.0026 (6) | 0.0146 (5) | 0.0020 (5) |
| C12 | 0.0507 (7) | 0.0421 (7) | 0.0361 (6) | 0.0009 (5) | 0.0134 (5) | 0.0027 (5) |
| C13 | 0.0584 (8) | 0.0485 (7) | 0.0338 (6) | 0.0048 (6) | 0.0137 (6) | 0.0018 (5) |
| C14 | 0.0480 (7) | 0.0435 (7) | 0.0385 (7) | 0.0017 (5) | 0.0125 (5) | −0.0033 (5) |
| C15 | 0.0614 (8) | 0.0500 (8) | 0.0425 (7) | 0.0052 (6) | 0.0196 (6) | −0.0004 (6) |
| C16 | 0.0775 (10) | 0.0569 (9) | 0.0514 (8) | 0.0108 (8) | 0.0155 (7) | 0.0125 (7) |
| C17 | 0.0643 (9) | 0.0541 (9) | 0.0671 (10) | 0.0176 (7) | 0.0116 (8) | 0.0003 (7) |
| C18 | 0.0749 (10) | 0.0713 (11) | 0.0660 (10) | 0.0226 (9) | 0.0301 (8) | −0.0061 (8) |
| C19 | 0.0767 (10) | 0.0682 (10) | 0.0463 (8) | 0.0190 (8) | 0.0276 (7) | 0.0051 (7) |
| C5 | 0.0469 (7) | 0.0404 (7) | 0.0353 (6) | −0.0022 (5) | 0.0130 (5) | 0.0000 (5) |
| C3 | 0.0625 (8) | 0.0446 (7) | 0.0451 (7) | 0.0008 (6) | 0.0231 (6) | −0.0030 (6) |
| C2 | 0.0596 (8) | 0.0469 (8) | 0.0507 (8) | 0.0092 (6) | 0.0196 (6) | 0.0002 (6) |
| C1 | 0.0960 (12) | 0.0713 (11) | 0.0481 (9) | 0.0244 (9) | 0.0257 (8) | 0.0208 (7) |
| N1 | 0.0600 (7) | 0.0469 (6) | 0.0385 (6) | 0.0083 (5) | 0.0165 (5) | 0.0061 (5) |
| N4 | 0.0596 (7) | 0.0415 (6) | 0.0363 (6) | 0.0050 (5) | 0.0194 (5) | 0.0036 (5) |
| N5 | 0.0634 (7) | 0.0509 (7) | 0.0374 (6) | 0.0112 (6) | 0.0216 (5) | 0.0045 (5) |
| O11 | 0.0690 (6) | 0.0500 (6) | 0.0451 (5) | 0.0160 (4) | 0.0240 (5) | 0.0054 (4) |
| O12 | 0.0861 (8) | 0.0757 (8) | 0.0637 (7) | 0.0326 (6) | 0.0415 (6) | 0.0330 (6) |
| O1 | 0.1074 (9) | 0.0644 (7) | 0.0550 (6) | 0.0145 (6) | 0.0460 (6) | −0.0001 (5) |
| C11—O12 | 1.2419 (16) | C19—H19 | 0.9300 |
| C11—O11 | 1.2616 (16) | C5—N5 | 1.2928 (17) |
| C11—C12 | 1.4784 (18) | C5—N1 | 1.3170 (16) |
| C12—C13 | 1.3140 (18) | C5—N4 | 1.3669 (16) |
| C12—H12 | 0.9300 | C3—O1 | 1.2041 (16) |
| C13—C14 | 1.4558 (19) | C3—N4 | 1.3631 (17) |
| C13—H13 | 0.9300 | C2—N1 | 1.4462 (16) |
| C14—C19 | 1.3814 (18) | C2—H2A | 0.9700 |
| C14—C15 | 1.3836 (19) | C2—H2B | 0.9700 |
| C15—C16 | 1.375 (2) | C1—N1 | 1.4422 (17) |
| C15—H15 | 0.9300 | C1—H1A | 0.9600 |
| C16—C17 | 1.369 (2) | C1—H1B | 0.9600 |
| C16—H16 | 0.9300 | C1—H1C | 0.9600 |
| C17—C18 | 1.360 (2) | N4—H4 | 0.899 (18) |
| C17—H17 | 0.9300 | N5—H5A | 0.899 (18) |
| C18—C19 | 1.368 (2) | N5—H5B | 0.929 (19) |
| C18—H18 | 0.9300 | ||
| O12—C11—O11 | 123.98 (12) | N5—C5—N1 | 126.99 (12) |
| O12—C11—C12 | 117.57 (11) | N5—C5—N4 | 122.74 (12) |
| O11—C11—C12 | 118.44 (11) | N1—C5—N4 | 110.27 (11) |
| C13—C12—C11 | 120.18 (12) | O1—C3—N4 | 126.30 (13) |
| C13—C12—H12 | 119.9 | O1—C3—C2 | 127.81 (13) |
| C11—C12—H12 | 119.9 | N4—C3—C2 | 105.88 (11) |
| C12—C13—C14 | 129.78 (12) | N1—C2—C3 | 102.94 (11) |
| C12—C13—H13 | 115.1 | N1—C2—H2A | 111.2 |
| C14—C13—H13 | 115.1 | C3—C2—H2A | 111.2 |
| C19—C14—C15 | 118.07 (13) | N1—C2—H2B | 111.2 |
| C19—C14—C13 | 118.11 (12) | C3—C2—H2B | 111.2 |
| C15—C14—C13 | 123.79 (11) | H2A—C2—H2B | 109.1 |
| C16—C15—C14 | 119.89 (13) | N1—C1—H1A | 109.5 |
| C16—C15—H15 | 120.1 | N1—C1—H1B | 109.5 |
| C14—C15—H15 | 120.1 | H1A—C1—H1B | 109.5 |
| C17—C16—C15 | 120.80 (14) | N1—C1—H1C | 109.5 |
| C17—C16—H16 | 119.6 | H1A—C1—H1C | 109.5 |
| C15—C16—H16 | 119.6 | H1B—C1—H1C | 109.5 |
| C18—C17—C16 | 119.90 (14) | C5—N1—C1 | 126.10 (12) |
| C18—C17—H17 | 120.0 | C5—N1—C2 | 110.10 (10) |
| C16—C17—H17 | 120.0 | C1—N1—C2 | 123.47 (12) |
| C17—C18—C19 | 119.63 (14) | C3—N4—C5 | 110.80 (11) |
| C17—C18—H18 | 120.2 | C3—N4—H4 | 124.6 (10) |
| C19—C18—H18 | 120.2 | C5—N4—H4 | 124.4 (10) |
| C18—C19—C14 | 121.69 (14) | C5—N5—H5A | 123.4 (10) |
| C18—C19—H19 | 119.2 | C5—N5—H5B | 114.2 (10) |
| C14—C19—H19 | 119.2 | H5A—N5—H5B | 122.2 (14) |
| O12—C11—C12—C13 | 1.7 (2) | O1—C3—C2—N1 | −179.68 (15) |
| O11—C11—C12—C13 | −179.30 (13) | N4—C3—C2—N1 | 0.82 (15) |
| C11—C12—C13—C14 | −178.52 (13) | N5—C5—N1—C1 | −5.5 (2) |
| C12—C13—C14—C19 | −172.03 (15) | N4—C5—N1—C1 | 173.73 (14) |
| C12—C13—C14—C15 | 9.8 (2) | N5—C5—N1—C2 | −179.12 (13) |
| C19—C14—C15—C16 | 0.3 (2) | N4—C5—N1—C2 | 0.16 (15) |
| C13—C14—C15—C16 | 178.51 (14) | C3—C2—N1—C5 | −0.60 (15) |
| C14—C15—C16—C17 | 0.9 (2) | C3—C2—N1—C1 | −174.38 (14) |
| C15—C16—C17—C18 | −1.4 (3) | O1—C3—N4—C5 | 179.71 (15) |
| C16—C17—C18—C19 | 0.7 (3) | C2—C3—N4—C5 | −0.79 (15) |
| C17—C18—C19—C14 | 0.5 (3) | N5—C5—N4—C3 | 179.74 (12) |
| C15—C14—C19—C18 | −1.0 (2) | N1—C5—N4—C3 | 0.43 (15) |
| C13—C14—C19—C18 | −179.29 (16) |
| H··· | ||||
| N4—H4···O11i | 0.899 (18) | 1.840 (18) | 2.7373 (15) | 177 (2) |
| N5—H5A···O11ii | 0.899 (18) | 1.959 (18) | 2.8403 (16) | 166 (1) |
| N5—H5B···O12i | 0.929 (19) | 1.754 (19) | 2.6663 (16) | 167 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N4—H4⋯O11i | 0.899 (18) | 1.840 (18) | 2.7373 (15) | 177 (2) |
| N5—H5 | 0.899 (18) | 1.959 (18) | 2.8403 (16) | 166 (1) |
| N5—H5 | 0.929 (19) | 1.754 (19) | 2.6663 (16) | 167 (2) |
Symmetry codes: (i) ; (ii) .