Literature DB >> 21754766

Creatininium cinnamate.

A Jahubar Ali, S Athimoolam, S Asath Bahadur.   

Abstract

THE CRYSTAL STRUCTURE OF THE TITLE COMPOUND (SYSTEMATIC NAME: 2-amino-1-methyl-4-oxo-4,5-dihydro-1H-imidazol-3-ium 3-phenyl-prop-2-enoate), C(4)n class="Species">H(8)N(3)O(+)·C(9)H(7)O(2) (-), is stabilized by N-H⋯O hydrogen bonding. Cations are linked to anions to form ion pairs with an R(2) (2)(8) ring motif. These ion pairs are connected through a C(2) (2)(6) chain motif extending along the c axis of the unit cell. This crystal packing is characterized by hydro-phobic layers at x ∼ 1/2 packed between hydro-philic layers at x ∼ 0.

Entities:  

Year:  2011        PMID: 21754766      PMCID: PMC3120415          DOI: 10.1107/S1600536811016916

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Bahadur, Kannan et al. (2007 ▶); Bahadur, Sivapragasam et al. (2007 ▶); Bahadur, Rajalakshmi et al. (2007 ▶). For hydrogen-bonding motif notation, see: Bernstein et al. (1995 ▶). For crystal engineering, see: Desiraju (1989 ▶). For information about n class="Chemical">creatinine and its biological significance, see: Madaras & Buck (1996 ▶); Sharma et al. (2004 ▶); Narayanan & Appleton (1980 ▶).

Experimental

Crystal data

C4H8N3O+·C9H7O2 M = 261.28 Monoclinic, a = 9.1680 (8) Å b = 11.3391 (11) Å c = 12.7070 (12) Å β = 104.578 (2)° V = 1278.5 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.25 × 0.22 × 0.18 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 9014 measured reflections 2250 independent reflections 2037 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.100 S = 1.05 2250 reflections 186 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.14 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL/PC (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL/PC; molecular graphics: Mercury (Macrae et al., 2008 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL/PC. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811016916/bt5542sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016916/bt5542Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811016916/bt5542Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H8N3O+·C9H7O2F(000) = 552
Mr = 261.28Dx = 1.357 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3849 reflections
a = 9.1680 (8) Åθ = 2.1–24.5°
b = 11.3391 (11) ŵ = 0.10 mm1
c = 12.7070 (12) ÅT = 293 K
β = 104.578 (2)°Block, colourless
V = 1278.5 (2) Å30.25 × 0.22 × 0.18 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer2037 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.023
graphiteθmax = 25.0°, θmin = 2.3°
ω scansh = −10→10
9014 measured reflectionsk = −13→13
2250 independent reflectionsl = −15→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.100w = 1/[σ2(Fo2) + (0.0546P)2 + 0.2262P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2250 reflectionsΔρmax = 0.16 e Å3
186 parametersΔρmin = −0.14 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.047 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C110.90518 (15)−0.14215 (12)0.42786 (10)0.0444 (3)
C120.82555 (14)−0.03500 (11)0.37734 (10)0.0425 (3)
H120.8449−0.00460.31420.051*
C130.72755 (15)0.01743 (12)0.42137 (10)0.0465 (3)
H130.7159−0.01680.48530.056*
C140.63452 (14)0.12096 (11)0.38527 (10)0.0431 (3)
C150.61909 (16)0.17391 (12)0.28495 (11)0.0501 (3)
H150.67160.14460.23680.060*
C160.52597 (19)0.26999 (14)0.25656 (13)0.0620 (4)
H160.51490.30460.18870.074*
C170.44942 (18)0.31527 (14)0.32702 (14)0.0627 (4)
H170.38850.38130.30760.075*
C180.46263 (19)0.26350 (16)0.42554 (14)0.0685 (5)
H180.40990.29340.47330.082*
C190.55385 (19)0.16718 (15)0.45395 (12)0.0616 (4)
H190.56180.13190.52120.074*
C50.88984 (14)0.38873 (11)0.37801 (10)0.0404 (3)
C30.78741 (16)0.45605 (12)0.50957 (11)0.0490 (3)
C20.74062 (17)0.53562 (12)0.41229 (11)0.0514 (4)
H2A0.63190.53680.38460.062*
H2B0.77630.61550.42990.062*
C10.8109 (2)0.53413 (16)0.23096 (13)0.0705 (5)
H1A0.87390.60300.24170.106*
H1B0.70960.55590.19440.106*
H1C0.84810.47790.18750.106*
N10.81251 (13)0.48238 (10)0.33492 (9)0.0477 (3)
N40.87699 (13)0.37178 (10)0.48180 (9)0.0445 (3)
N50.96941 (14)0.32061 (11)0.33272 (10)0.0490 (3)
O110.99961 (12)−0.18945 (8)0.38395 (8)0.0530 (3)
O120.87297 (14)−0.18107 (10)0.51056 (9)0.0711 (4)
O10.75459 (15)0.46421 (10)0.59527 (9)0.0710 (4)
H40.9161 (18)0.3101 (15)0.5239 (14)0.060 (5)*
H5A0.9778 (18)0.3305 (14)0.2643 (15)0.058 (4)*
H5B1.0243 (19)0.2638 (16)0.3789 (15)0.066 (5)*
U11U22U33U12U13U23
C110.0542 (7)0.0438 (7)0.0369 (6)0.0026 (6)0.0146 (5)0.0020 (5)
C120.0507 (7)0.0421 (7)0.0361 (6)0.0009 (5)0.0134 (5)0.0027 (5)
C130.0584 (8)0.0485 (7)0.0338 (6)0.0048 (6)0.0137 (6)0.0018 (5)
C140.0480 (7)0.0435 (7)0.0385 (7)0.0017 (5)0.0125 (5)−0.0033 (5)
C150.0614 (8)0.0500 (8)0.0425 (7)0.0052 (6)0.0196 (6)−0.0004 (6)
C160.0775 (10)0.0569 (9)0.0514 (8)0.0108 (8)0.0155 (7)0.0125 (7)
C170.0643 (9)0.0541 (9)0.0671 (10)0.0176 (7)0.0116 (8)0.0003 (7)
C180.0749 (10)0.0713 (11)0.0660 (10)0.0226 (9)0.0301 (8)−0.0061 (8)
C190.0767 (10)0.0682 (10)0.0463 (8)0.0190 (8)0.0276 (7)0.0051 (7)
C50.0469 (7)0.0404 (7)0.0353 (6)−0.0022 (5)0.0130 (5)0.0000 (5)
C30.0625 (8)0.0446 (7)0.0451 (7)0.0008 (6)0.0231 (6)−0.0030 (6)
C20.0596 (8)0.0469 (8)0.0507 (8)0.0092 (6)0.0196 (6)0.0002 (6)
C10.0960 (12)0.0713 (11)0.0481 (9)0.0244 (9)0.0257 (8)0.0208 (7)
N10.0600 (7)0.0469 (6)0.0385 (6)0.0083 (5)0.0165 (5)0.0061 (5)
N40.0596 (7)0.0415 (6)0.0363 (6)0.0050 (5)0.0194 (5)0.0036 (5)
N50.0634 (7)0.0509 (7)0.0374 (6)0.0112 (6)0.0216 (5)0.0045 (5)
O110.0690 (6)0.0500 (6)0.0451 (5)0.0160 (4)0.0240 (5)0.0054 (4)
O120.0861 (8)0.0757 (8)0.0637 (7)0.0326 (6)0.0415 (6)0.0330 (6)
O10.1074 (9)0.0644 (7)0.0550 (6)0.0145 (6)0.0460 (6)−0.0001 (5)
C11—O121.2419 (16)C19—H190.9300
C11—O111.2616 (16)C5—N51.2928 (17)
C11—C121.4784 (18)C5—N11.3170 (16)
C12—C131.3140 (18)C5—N41.3669 (16)
C12—H120.9300C3—O11.2041 (16)
C13—C141.4558 (19)C3—N41.3631 (17)
C13—H130.9300C2—N11.4462 (16)
C14—C191.3814 (18)C2—H2A0.9700
C14—C151.3836 (19)C2—H2B0.9700
C15—C161.375 (2)C1—N11.4422 (17)
C15—H150.9300C1—H1A0.9600
C16—C171.369 (2)C1—H1B0.9600
C16—H160.9300C1—H1C0.9600
C17—C181.360 (2)N4—H40.899 (18)
C17—H170.9300N5—H5A0.899 (18)
C18—C191.368 (2)N5—H5B0.929 (19)
C18—H180.9300
O12—C11—O11123.98 (12)N5—C5—N1126.99 (12)
O12—C11—C12117.57 (11)N5—C5—N4122.74 (12)
O11—C11—C12118.44 (11)N1—C5—N4110.27 (11)
C13—C12—C11120.18 (12)O1—C3—N4126.30 (13)
C13—C12—H12119.9O1—C3—C2127.81 (13)
C11—C12—H12119.9N4—C3—C2105.88 (11)
C12—C13—C14129.78 (12)N1—C2—C3102.94 (11)
C12—C13—H13115.1N1—C2—H2A111.2
C14—C13—H13115.1C3—C2—H2A111.2
C19—C14—C15118.07 (13)N1—C2—H2B111.2
C19—C14—C13118.11 (12)C3—C2—H2B111.2
C15—C14—C13123.79 (11)H2A—C2—H2B109.1
C16—C15—C14119.89 (13)N1—C1—H1A109.5
C16—C15—H15120.1N1—C1—H1B109.5
C14—C15—H15120.1H1A—C1—H1B109.5
C17—C16—C15120.80 (14)N1—C1—H1C109.5
C17—C16—H16119.6H1A—C1—H1C109.5
C15—C16—H16119.6H1B—C1—H1C109.5
C18—C17—C16119.90 (14)C5—N1—C1126.10 (12)
C18—C17—H17120.0C5—N1—C2110.10 (10)
C16—C17—H17120.0C1—N1—C2123.47 (12)
C17—C18—C19119.63 (14)C3—N4—C5110.80 (11)
C17—C18—H18120.2C3—N4—H4124.6 (10)
C19—C18—H18120.2C5—N4—H4124.4 (10)
C18—C19—C14121.69 (14)C5—N5—H5A123.4 (10)
C18—C19—H19119.2C5—N5—H5B114.2 (10)
C14—C19—H19119.2H5A—N5—H5B122.2 (14)
O12—C11—C12—C131.7 (2)O1—C3—C2—N1−179.68 (15)
O11—C11—C12—C13−179.30 (13)N4—C3—C2—N10.82 (15)
C11—C12—C13—C14−178.52 (13)N5—C5—N1—C1−5.5 (2)
C12—C13—C14—C19−172.03 (15)N4—C5—N1—C1173.73 (14)
C12—C13—C14—C159.8 (2)N5—C5—N1—C2−179.12 (13)
C19—C14—C15—C160.3 (2)N4—C5—N1—C20.16 (15)
C13—C14—C15—C16178.51 (14)C3—C2—N1—C5−0.60 (15)
C14—C15—C16—C170.9 (2)C3—C2—N1—C1−174.38 (14)
C15—C16—C17—C18−1.4 (3)O1—C3—N4—C5179.71 (15)
C16—C17—C18—C190.7 (3)C2—C3—N4—C5−0.79 (15)
C17—C18—C19—C140.5 (3)N5—C5—N4—C3179.74 (12)
C15—C14—C19—C18−1.0 (2)N1—C5—N4—C30.43 (15)
C13—C14—C19—C18−179.29 (16)
D—H···AD—HH···AD···AD—H···A
N4—H4···O11i0.899 (18)1.840 (18)2.7373 (15)177 (2)
N5—H5A···O11ii0.899 (18)1.959 (18)2.8403 (16)166 (1)
N5—H5B···O12i0.929 (19)1.754 (19)2.6663 (16)167 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4⋯O11i0.899 (18)1.840 (18)2.7373 (15)177 (2)
N5—H5A⋯O11ii0.899 (18)1.959 (18)2.8403 (16)166 (1)
N5—H5B⋯O12i0.929 (19)1.754 (19)2.6663 (16)167 (2)

Symmetry codes: (i) ; (ii) .

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1.  Creatininium hydrogen maleate.

Authors:  A Jahubar Ali; S Athimoolam; S Asath Bahadur
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-12

2.  Creatinium hydrogen oxalate.

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