Literature DB >> 22347007

3-Bromo-pyridin-2-amine.

Marcelle Johnson1, Andreas Lemmerer.   

Abstract

In the crystal structure of the title compound, C(5)H(5)BrN(2), mol-ecules assemble via pairs of N-H⋯N hydrogen bonds into inversion dimers using only the syn H atom on the amine group. These dimers then assemble further into two-dimensional layers via type I C-Br⋯Br [Br⋯Br = 3.693 (s6) Å] halogen bonding along the (102) plane.

Entities:  

Year:  2012        PMID: 22347007      PMCID: PMC3275062          DOI: 10.1107/S1600536811055541

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For halogen bonding, see: Metrangelo et al. (2005 ▶). For a related structure, see: Hu et al. (2011 ▶).

Experimental

Crystal data

C5H5BrN2 M = 173.02 Monoclinic, a = 12.2179 (6) Å b = 4.0007 (2) Å c = 12.8451 (6) Å β = 109.731 (3)° V = 591.01 (5) Å3 Z = 4 Mo Kα radiation μ = 6.84 mm−1 T = 173 K 0.5 × 0.4 × 0.09 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: integration (XPREP; Bruker, 2004 ▶) T min = 0.131, T max = 0.578 5622 measured reflections 1428 independent reflections 1200 reflections with I > 2σ(I) R int = 0.093

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.082 S = 0.99 1428 reflections 81 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.04 e Å−3 Δρmin = −0.77 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811055541/zj2050sup1.cif Supplementary material file. DOI: 10.1107/S1600536811055541/zj2050Isup2.mol Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811055541/zj2050Isup3.hkl Supplementary material file. DOI: 10.1107/S1600536811055541/zj2050Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H5BrN2F(000) = 336
Mr = 173.02Dx = 1.945 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2888 reflections
a = 12.2179 (6) Åθ = 3.2–28.3°
b = 4.0007 (2) ŵ = 6.84 mm1
c = 12.8451 (6) ÅT = 173 K
β = 109.731 (3)°Plate, brown
V = 591.01 (5) Å30.5 × 0.4 × 0.09 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer1200 reflections with I > 2σ(I)
ω scansRint = 0.093
Absorption correction: integration (XPREP; Bruker, 2004)θmax = 28.0°, θmin = 1.8°
Tmin = 0.131, Tmax = 0.578h = −16→15
5622 measured reflectionsk = −5→5
1428 independent reflectionsl = −16→16
Refinement on F20 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.034w = 1/[σ2(Fo2) + (0.0479P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.082(Δ/σ)max < 0.001
S = 0.99Δρmax = 1.04 e Å3
1428 reflectionsΔρmin = −0.77 e Å3
81 parameters
Experimental. Numerical integration absorption corrections based on indexed crystal faces were applied using the XPREP routine (Bruker, 2004)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C20.8182 (2)0.4235 (7)0.4926 (2)0.0288 (6)
C30.7048 (2)0.3668 (6)0.4912 (2)0.0267 (5)
C40.6702 (2)0.4704 (7)0.5771 (2)0.0309 (6)
H40.59340.42870.57630.037*
C50.7499 (3)0.6374 (7)0.6653 (2)0.0327 (6)
H50.7290.71680.72580.039*
C60.8602 (3)0.6833 (7)0.6615 (2)0.0334 (6)
H60.9150.79760.72150.04*
N10.8956 (2)0.5781 (6)0.5793 (2)0.0325 (5)
N20.8547 (3)0.3359 (7)0.4077 (2)0.0386 (6)
Br10.59557 (2)0.15619 (6)0.36599 (2)0.03201 (13)
H2S0.923 (3)0.345 (7)0.415 (3)0.030 (9)*
H2A0.820 (4)0.210 (8)0.362 (4)0.043 (11)*
U11U22U33U12U13U23
C20.0309 (14)0.0294 (12)0.0253 (12)0.0002 (11)0.0084 (11)0.0031 (10)
C30.0271 (14)0.0256 (12)0.0238 (12)0.0031 (9)0.0039 (11)0.0034 (9)
C40.0282 (14)0.0331 (13)0.0319 (13)0.0070 (11)0.0107 (11)0.0076 (12)
C50.0359 (16)0.0376 (15)0.0250 (13)0.0059 (11)0.0109 (12)0.0036 (10)
C60.0343 (16)0.0367 (15)0.0273 (13)−0.0010 (12)0.0079 (12)0.0002 (11)
N10.0286 (13)0.0408 (12)0.0266 (11)−0.0041 (10)0.0073 (10)−0.0022 (10)
N20.0303 (15)0.0568 (18)0.0309 (13)−0.0112 (12)0.0134 (12)−0.0120 (12)
Br10.02548 (18)0.03463 (19)0.03161 (18)0.00029 (10)0.00396 (12)−0.00178 (10)
C2—N11.344 (4)C5—C61.378 (5)
C2—N21.357 (4)C5—H50.95
C2—C31.398 (4)C6—N11.336 (4)
C3—C41.372 (4)C6—H60.95
C3—Br11.904 (3)N2—H2S0.81 (4)
C4—C51.390 (4)N2—H2A0.78 (4)
C4—H40.95
N1—C2—N2117.1 (3)C6—C5—H5121.3
N1—C2—C3120.2 (2)C4—C5—H5121.3
N2—C2—C3122.7 (3)N1—C6—C5124.6 (3)
C4—C3—C2120.8 (3)N1—C6—H6117.7
C4—C3—Br1119.7 (2)C5—C6—H6117.7
C2—C3—Br1119.5 (2)C6—N1—C2118.4 (2)
C3—C4—C5118.7 (3)C2—N2—H2S120 (3)
C3—C4—H4120.6C2—N2—H2A122 (3)
C5—C4—H4120.6H2S—N2—H2A113 (4)
C6—C5—C4117.3 (3)
N1—C2—C3—C40.7 (4)C3—C4—C5—C6−1.1 (4)
N2—C2—C3—C4−177.6 (3)C4—C5—C6—N1−0.1 (4)
N1—C2—C3—Br1178.6 (2)C5—C6—N1—C21.7 (4)
N2—C2—C3—Br10.3 (4)N2—C2—N1—C6176.5 (3)
C2—C3—C4—C50.9 (4)C3—C2—N1—C6−1.9 (4)
Br1—C3—C4—C5−177.04 (19)
D—H···AD—HH···AD···AD—H···A
N2—H2S···N1i0.81 (4)2.21 (4)3.019 (4)173 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2S⋯N1i0.81 (4)2.21 (4)3.019 (4)173 (3)

Symmetry code: (i) .

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