Literature DB >> 22346992

(E)-4-{2-[(2-Hy-droxy-naphthalen-1-yl)methyl-idene]hydrazinecarbon-yl}pyridinium nitrate.

Rahman Bikas, Hassan Hosseini Monfared, Tadeusz Lis, Milosz Siczek.   

Abstract

The title compound, C(17)H(14)N(3)O(2) (+)·NO(3) (-), is an aroylhydrazone-based material consisting of a 4-(hydrazinecarbon-yl)pyridinium cation and a nitrate anion. In the cation, the dihedral angle between the benzene ring and the naphthalene ring system is 2.20 (7)°. In the cation, the configuration about the C=N bond is E. There is an intra-molecular O-H⋯N hydrogen bond in the cation, and the supra-molecular structure is stabilized by inter-molecular N-H⋯O hydrogen bonds and weak C-H⋯O contacts between the cation and the nitrate anion.

Entities:  

Year:  2012        PMID: 22346992      PMCID: PMC3275047          DOI: 10.1107/S160053681200061X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For historical background to aroylhydrazones, see: Craliz et al. (1955 ▶). For related structures see: Bikas et al. (2010a ▶,b ▶); Hosseini Monfared et al. (2010a ▶); Abdel-Aziz et al. (2011 ▶). For background to the development of hydrazide derivatives for biological evaluation, see: Carvalho et al. (2008 ▶). For catalytic applications of aroylhydrazones, see: Hosseini Monfared et al. (2010b ▶). The overall structure of the cation is very similar to that found for free ligand, see: Richardson & Bernhardt (1999 ▶).

Experimental

Crystal data

C17H14N3O2 +·NO3 M = 354.32 Monoclinic, a = 8.695 (3) Å b = 6.375 (2) Å c = 28.955 (9) Å β = 98.19 (4)° V = 1588.6 (9) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.30 × 0.10 × 0.07 mm

Data collection

Oxford Diffraction Xcalibur PX kappa-geometry diffractometer with an Onyx CCD camera 12608 measured reflections 5046 independent reflections 3368 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.102 S = 1.03 5046 reflections 236 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2003 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2003 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681200061X/go2040sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681200061X/go2040Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681200061X/go2040Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H14N3O2+·NO3F(000) = 736
Mr = 354.32Dx = 1.481 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4462 reflections
a = 8.695 (3) Åθ = 2–70°
b = 6.375 (2) ŵ = 0.11 mm1
c = 28.955 (9) ÅT = 100 K
β = 98.19 (4)°Needle, orange
V = 1588.6 (9) Å30.30 × 0.10 × 0.07 mm
Z = 4
Oxford Diffraction Xcalibur PX kappa-geometry diffractometer with an Onyx CCD camera3368 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.030
graphiteθmax = 31.1°, θmin = 2.6°
ω and phi scansh = −12→12
12608 measured reflectionsk = −8→9
5046 independent reflectionsl = −42→35
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.048P)2] where P = (Fo2 + 2Fc2)/3
5046 reflections(Δ/σ)max = 0.001
236 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.97012 (9)0.07072 (13)0.68081 (3)0.02035 (19)
H10.93950.17490.66420.031*
C10.69254 (13)0.00322 (16)0.67027 (4)0.0134 (2)
C20.84656 (13)−0.04806 (17)0.68768 (4)0.0157 (2)
C30.88242 (14)−0.23367 (17)0.71408 (4)0.0183 (2)
H30.9873−0.26430.72630.022*
C40.76730 (14)−0.36810 (17)0.72201 (4)0.0182 (2)
H40.7931−0.49130.73990.022*
C50.60945 (14)−0.32776 (17)0.70405 (4)0.0160 (2)
C60.49134 (15)−0.47202 (18)0.71132 (4)0.0196 (3)
H60.5186−0.59880.72770.023*
C70.33824 (15)−0.43169 (19)0.69510 (5)0.0229 (3)
H70.2600−0.53010.69980.028*
C80.29866 (14)−0.2422 (2)0.67130 (4)0.0229 (3)
H80.1924−0.21180.66080.028*
C90.41042 (14)−0.10038 (18)0.66288 (4)0.0189 (2)
H90.38030.02500.64630.023*
C100.57040 (13)−0.13845 (16)0.67860 (4)0.0143 (2)
C110.65724 (13)0.19520 (17)0.64348 (4)0.0149 (2)
H110.55260.23480.63320.018*
N10.77034 (11)0.31000 (14)0.63397 (3)0.0160 (2)
N20.73812 (12)0.49164 (14)0.60861 (3)0.0163 (2)
H20.64250.53340.59890.020*
C120.86518 (13)0.60206 (17)0.59968 (4)0.0166 (2)
O20.99749 (10)0.53944 (13)0.61115 (3)0.0244 (2)
C130.83618 (13)0.80954 (16)0.57479 (4)0.0151 (2)
C140.69062 (14)0.88961 (17)0.55696 (4)0.0172 (2)
H140.59870.81570.56110.021*
C150.68192 (14)1.07777 (17)0.53318 (4)0.0181 (2)
H150.58341.13310.52050.022*
N30.81220 (12)1.18318 (14)0.52782 (3)0.0178 (2)
H3A0.80431.30070.51170.021*
C160.95343 (14)1.11540 (18)0.54613 (4)0.0198 (3)
H161.04291.19700.54310.024*
C170.96832 (14)0.92589 (18)0.56950 (4)0.0188 (2)
H171.06840.87500.58190.023*
N1A0.32288 (12)0.41051 (15)0.54333 (4)0.0204 (2)
O1A0.19647 (10)0.44786 (12)0.51679 (3)0.0205 (2)
O2A0.34501 (10)0.23488 (14)0.56160 (3)0.0273 (2)
O3A0.42367 (12)0.55145 (16)0.54972 (4)0.0453 (3)
U11U22U33U12U13U23
O10.0168 (4)0.0201 (4)0.0232 (5)−0.0038 (3)−0.0003 (3)0.0040 (3)
C10.0172 (5)0.0125 (5)0.0104 (5)0.0002 (4)0.0017 (4)−0.0002 (4)
C20.0177 (5)0.0165 (5)0.0127 (6)−0.0016 (4)0.0017 (4)−0.0028 (4)
C30.0187 (5)0.0203 (5)0.0150 (6)0.0039 (5)−0.0004 (4)0.0008 (5)
C40.0249 (6)0.0159 (5)0.0137 (6)0.0046 (5)0.0025 (5)0.0028 (4)
C50.0225 (6)0.0144 (5)0.0117 (6)0.0010 (4)0.0050 (4)0.0001 (4)
C60.0274 (6)0.0158 (5)0.0166 (6)−0.0003 (5)0.0067 (5)0.0021 (5)
C70.0239 (6)0.0231 (6)0.0232 (7)−0.0070 (5)0.0081 (5)0.0024 (5)
C80.0177 (6)0.0284 (6)0.0221 (7)−0.0032 (5)0.0009 (5)0.0031 (5)
C90.0192 (5)0.0191 (5)0.0177 (6)−0.0001 (5)0.0006 (5)0.0051 (5)
C100.0175 (5)0.0144 (5)0.0113 (6)−0.0002 (4)0.0027 (4)−0.0003 (4)
C110.0180 (5)0.0135 (5)0.0128 (6)0.0000 (4)0.0014 (4)−0.0008 (4)
N10.0217 (5)0.0116 (4)0.0144 (5)−0.0010 (4)0.0020 (4)0.0012 (4)
N20.0192 (5)0.0128 (4)0.0168 (5)−0.0009 (4)0.0018 (4)0.0038 (4)
C120.0210 (6)0.0139 (5)0.0147 (6)−0.0037 (4)0.0021 (4)−0.0015 (4)
O20.0194 (4)0.0202 (4)0.0327 (6)−0.0015 (3)0.0008 (4)0.0044 (4)
C130.0201 (5)0.0132 (5)0.0122 (6)−0.0030 (4)0.0033 (4)−0.0009 (4)
C140.0200 (5)0.0153 (5)0.0160 (6)−0.0057 (4)0.0019 (4)−0.0007 (4)
C150.0210 (6)0.0167 (5)0.0162 (6)−0.0030 (5)0.0014 (5)−0.0010 (4)
N30.0249 (5)0.0146 (4)0.0141 (5)−0.0048 (4)0.0030 (4)0.0016 (4)
C160.0212 (6)0.0194 (5)0.0193 (6)−0.0064 (5)0.0051 (5)−0.0002 (5)
C170.0193 (6)0.0192 (5)0.0178 (6)−0.0033 (5)0.0025 (5)0.0006 (5)
N1A0.0182 (5)0.0218 (5)0.0207 (6)−0.0045 (4)0.0011 (4)0.0028 (4)
O1A0.0169 (4)0.0208 (4)0.0223 (5)−0.0037 (3)−0.0020 (3)0.0052 (3)
O2A0.0274 (5)0.0225 (4)0.0304 (6)0.0001 (4)−0.0009 (4)0.0091 (4)
O3A0.0312 (6)0.0385 (6)0.0590 (8)−0.0226 (5)−0.0178 (5)0.0197 (5)
O1—C21.3521 (14)C11—H110.9500
O1—H10.8400N1—N21.3784 (13)
C1—C21.4007 (16)N2—C121.3654 (15)
C1—C101.4404 (16)N2—H20.8800
C1—C111.4581 (16)C12—O21.2183 (14)
C2—C31.4192 (16)C12—C131.5101 (16)
C3—C41.3618 (17)C13—C141.3938 (17)
C3—H30.9500C13—C171.3942 (16)
C4—C51.4202 (17)C14—C151.3799 (16)
C4—H40.9500C14—H140.9500
C5—C61.4165 (17)C15—N31.3449 (15)
C5—C101.4295 (16)C15—H150.9500
C6—C71.3714 (18)N3—C161.3380 (16)
C6—H60.9500N3—H3A0.8800
C7—C81.4091 (18)C16—C171.3818 (17)
C7—H70.9500C16—H160.9500
C8—C91.3741 (17)C17—H170.9500
C8—H80.9500N1A—O2A1.2416 (13)
C9—C101.4215 (16)N1A—O3A1.2503 (13)
C9—H90.9500N1A—O1A1.2706 (13)
C11—N11.2867 (15)
C2—O1—H1109.5N1—C11—C1118.81 (10)
C2—C1—C10118.90 (10)N1—C11—H11120.6
C2—C1—C11120.36 (10)C1—C11—H11120.6
C10—C1—C11120.73 (10)C11—N1—N2119.23 (10)
O1—C2—C1123.73 (10)C12—N2—N1115.18 (10)
O1—C2—C3115.34 (10)C12—N2—H2122.4
C1—C2—C3120.93 (11)N1—N2—H2122.4
C4—C3—C2120.34 (11)O2—C12—N2122.52 (11)
C4—C3—H3119.8O2—C12—C13120.27 (11)
C2—C3—H3119.8N2—C12—C13117.21 (10)
C3—C4—C5121.30 (11)C14—C13—C17118.91 (10)
C3—C4—H4119.4C14—C13—C12125.35 (10)
C5—C4—H4119.4C17—C13—C12115.73 (10)
C6—C5—C4120.75 (10)C15—C14—C13119.05 (11)
C6—C5—C10120.05 (11)C15—C14—H14120.5
C4—C5—C10119.20 (11)C13—C14—H14120.5
C7—C6—C5121.08 (11)N3—C15—C14120.31 (11)
C7—C6—H6119.5N3—C15—H15119.8
C5—C6—H6119.5C14—C15—H15119.8
C6—C7—C8119.07 (11)C16—N3—C15122.24 (10)
C6—C7—H7120.5C16—N3—H3A118.9
C8—C7—H7120.5C15—N3—H3A118.9
C9—C8—C7121.41 (11)N3—C16—C17119.54 (11)
C9—C8—H8119.3N3—C16—H16120.2
C7—C8—H8119.3C17—C16—H16120.2
C8—C9—C10121.03 (11)C16—C17—C13119.85 (11)
C8—C9—H9119.5C16—C17—H17120.1
C10—C9—H9119.5C13—C17—H17120.1
C9—C10—C5117.31 (10)O2A—N1A—O3A121.47 (11)
C9—C10—C1123.41 (10)O2A—N1A—O1A119.66 (10)
C5—C10—C1119.28 (10)O3A—N1A—O1A118.85 (10)
C10—C1—C2—O1178.17 (10)C11—C1—C10—C9−1.70 (17)
C11—C1—C2—O1−0.78 (18)C2—C1—C10—C5−0.43 (16)
C10—C1—C2—C3−1.51 (17)C11—C1—C10—C5178.51 (11)
C11—C1—C2—C3179.55 (11)C2—C1—C11—N13.82 (17)
O1—C2—C3—C4−178.13 (11)C10—C1—C11—N1−175.10 (11)
C1—C2—C3—C41.57 (18)C1—C11—N1—N2179.91 (10)
C2—C3—C4—C50.38 (18)C11—N1—N2—C12−179.21 (10)
C3—C4—C5—C6178.04 (12)N1—N2—C12—O23.65 (17)
C3—C4—C5—C10−2.30 (18)N1—N2—C12—C13−176.03 (9)
C4—C5—C6—C7178.34 (12)O2—C12—C13—C14174.93 (12)
C10—C5—C6—C7−1.32 (18)N2—C12—C13—C14−5.38 (17)
C5—C6—C7—C8−0.71 (19)O2—C12—C13—C17−4.57 (17)
C6—C7—C8—C91.9 (2)N2—C12—C13—C17175.11 (10)
C7—C8—C9—C10−1.0 (2)C17—C13—C14—C152.30 (17)
C8—C9—C10—C5−1.02 (18)C12—C13—C14—C15−177.18 (11)
C8—C9—C10—C1179.19 (12)C13—C14—C15—N3−0.78 (18)
C6—C5—C10—C92.15 (17)C14—C15—N3—C16−2.04 (18)
C4—C5—C10—C9−177.51 (11)C15—N3—C16—C173.20 (18)
C6—C5—C10—C1−178.04 (11)N3—C16—C17—C13−1.54 (18)
C4—C5—C10—C12.30 (17)C14—C13—C17—C16−1.17 (18)
C2—C1—C10—C9179.36 (11)C12—C13—C17—C16178.37 (11)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.841.822.5519 (15)145.
N2—H2···O3A0.882.213.0332 (19)155.
N3—H3A···O1Ai0.881.802.6794 (14)174.
C14—H14···O3A0.952.263.1528 (16)156.
C8—H8···O2ii0.952.603.2449 (19)125.
C15—H15···O2Aiii0.952.613.3089 (19)130.
C16—H16···O1Aiv0.952.283.1923 (16)160.
C16—H16···O2Aiv0.952.623.4553 (19)147.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.841.822.5519 (15)145
N2—H2⋯O3A0.882.213.0332 (19)155
N3—H3A⋯O1Ai0.881.802.6794 (14)174
C14—H14⋯O3A0.952.263.1528 (16)156
C8—H8⋯O2ii0.952.603.2449 (19)125
C15—H15⋯O2Aiii0.952.613.3089 (19)130
C16—H16⋯O1Aiv0.952.283.1923 (16)160
C16—H16⋯O2Aiv0.952.623.4553 (19)147

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  8 in total

1.  Mode of action of isonicotinic hydrazide.

Authors:  J CYMERMAN-CRAIG; D WILLIS; S D RUBBO; J EDGAR
Journal:  Nature       Date:  1955-07-02       Impact factor: 49.962

2.  Synthesis and antimycobacterial evaluation of new trans-cinnamic acid hydrazide derivatives.

Authors:  Samir A Carvalho; Edson F da Silva; Marcus V N de Souza; Maria C S Lourenço; Felipe R Vicente
Journal:  Bioorg Med Chem Lett       Date:  2007-11-28       Impact factor: 2.823

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Crystal and molecular structure of 2-hydroxy-1-naphthaldehyde isonicotinoyl hydrazone (NIH) and its iron(III) complex: an iron chelator with anti-tumour activity.

Authors:  D R Richardson; P V Bernhardt
Journal:  J Biol Inorg Chem       Date:  1999-06       Impact factor: 3.358

5.  (E)-3-Hydr-oxy-N'-(2-hydroxy-benzyl-idene)-2-naphthohydrazide.

Authors:  Hassan Hosseini Monfared; Rahman Bikas; Peter Mayer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-24

6.  (2Z,N'E)-N'-[(2-Hy-droxy-1-naphth-yl)methyl-idene]furan-2-carbohydrazonic acid.

Authors:  Rahman Bikas; Hassan Hosseini Monfared; Keyvan Bijanzad; Ahmet Koroglu; Canan Kazak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-21

7.  (E)-N'-(2-Hy-droxy-benzyl-idene)furan-2-carbohydrazide.

Authors:  Rahman Bikas; Hassan Hosseini Monfared; Canan Kazak; N Burcu Arslan; Keyvan Bijanzad
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-14

8.  N'-[(1E,2E)-1-(2-Phenyl-hydrazin-1-yl-idene)-1-(phenyl-sulfon-yl)propan-2-yl-idene]benzohydrazide.

Authors:  Hatem A Abdel-Aziz; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-11
  8 in total
  1 in total

1.  (E,E)-N'-{4-[(2-Benzoyl-hydrazin-1-yl-idene)meth-yl]benzyl-idene}benzo-hydrazide.

Authors:  Ramin Karimian; Hassan Hosseini-Monfared; Rahman Bikas; N Burcu Arslan; Canan Kazak; Ahmet Koroglu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-18
  1 in total

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