Literature DB >> 22346839

Bis{1-[(1H-benzimidazol-2-yl)meth-yl]-1H-imidazole-κN}-bis-(3,5-dicarb-oxy-benzoato-κO)zinc octa-hydrate.

Lei Zhao, Bingtao Liu, Ting Li, Xiangru Meng.   

Abstract

In the title complex, [Zn(C(9)H(5)O(6))(2)(C(11)n class="Species">H(10)N(4))(2)]·8H(2)O, the Zn(II) ion exhibits site symmetry 2. It shows a distorted tetra-hedral coordination defined by two N atoms from two symmetry-related 1-[(1H-benzimidazol-2-yl)meth-yl]-1H-imid-azole ligands and by two O atoms from two symmetry-related monodeprotonated 3,5-dicarb-oxy-benzoate anions. In the crystal, complex mol-ecules and solvent water mol-ecules are linked through inter-molecular O-H⋯O, O-H⋯N, and N-H⋯O hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2012        PMID: 22346839      PMCID: PMC3274892          DOI: 10.1107/S160053681200147X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on ZnII complexes constructed from both aromatic carboxyl­ates and n class="Disease">N-heterocyclic ligands, see: Lin et al. (2008 ▶); Tian et al. (2010 ▶).

Experimental

Crystal data

[Zn(C9H5O6)2(C11n class="Species">H10N4)2]·8H2O M = 1024.22 Monoclinic, a = 20.870 (4) Å b = 15.008 (3) Å c = 15.472 (3) Å β = 109.51 (3)° V = 4567.9 (16) Å3 Z = 4 Mo Kα radiation μ = 0.63 mm−1 T = 293 K 0.18 × 0.15 × 0.14 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2004 ▶) T min = 0.896, T max = 0.917 15325 measured reflections 4127 independent reflections 3898 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.158 S = 1.07 4127 reflections 314 parameters H-atom parameters constrained Δρmax = 1.08 e Å−3 Δρmin = −0.45 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2004 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681200147X/ff2052sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681200147X/ff2052Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C9H5O6)2(C11H10N4)2]·8H2OF(000) = 2128
Mr = 1024.22Dx = 1.489 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 6831 reflections
a = 20.870 (4) Åθ = 1.7–27.9°
b = 15.008 (3) ŵ = 0.63 mm1
c = 15.472 (3) ÅT = 293 K
β = 109.51 (3)°Prism, colourless
V = 4567.9 (16) Å30.18 × 0.15 × 0.14 mm
Z = 4
Rigaku Saturn diffractometer4127 independent reflections
Radiation source: fine-focus sealed tube3898 reflections with I > 2σ(I)
graphiteRint = 0.031
Detector resolution: 28.5714 pixels mm-1θmax = 25.3°, θmin = 2.0°
ω scansh = −25→25
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2004)k = −17→18
Tmin = 0.896, Tmax = 0.917l = −18→18
15325 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.158H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0953P)2 + 7.0031P] where P = (Fo2 + 2Fc2)/3
4127 reflections(Δ/σ)max < 0.001
314 parametersΔρmax = 1.08 e Å3
0 restraintsΔρmin = −0.45 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn11.00000.47361 (3)0.75000.02673 (18)
N11.00685 (12)0.54973 (17)0.85945 (17)0.0303 (5)
N21.04718 (12)0.60129 (16)0.99936 (16)0.0295 (5)
N31.20973 (13)0.63838 (16)1.09909 (17)0.0323 (6)
N41.15439 (13)0.75634 (17)1.11874 (19)0.0368 (6)
H41.12190.78911.12350.044*
O10.91112 (10)0.41744 (14)0.70946 (15)0.0353 (5)
O20.95138 (12)0.31291 (17)0.64061 (18)0.0486 (6)
O30.67237 (16)0.42512 (17)0.6806 (3)0.0685 (9)
H30.65390.46030.63910.082*
O40.60726 (13)0.3058 (2)0.6317 (3)0.0730 (10)
O50.70841 (13)0.02986 (15)0.5653 (3)0.0604 (8)
H50.7129−0.02440.57030.073*
O60.81799 (15)0.02479 (16)0.5819 (3)0.0655 (9)
O70.03572 (17)0.8297 (2)0.1368 (3)0.0841 (11)
H7A0.00960.79390.15170.101*
H7B0.05000.87610.16880.101*
O80.5834 (2)0.5183 (3)0.7433 (3)0.1037 (14)
H8A0.57240.46360.74010.124*
H8B0.60170.51380.80110.124*
O90.4962 (3)0.3677 (5)0.6555 (6)0.214 (4)
H9A0.51300.37460.61290.256*
H9B0.45920.39660.64280.256*
O100.4214 (6)0.4833 (11)0.5182 (7)0.417 (11)
H10A0.44420.44750.55970.501*
H10B0.38220.47330.52140.501*
C11.05420 (15)0.53995 (19)0.9405 (2)0.0303 (6)
H1A1.08780.49640.95460.036*
C20.96815 (16)0.6220 (2)0.8680 (2)0.0381 (7)
H2A0.93110.64510.82150.046*
C30.99263 (16)0.6536 (2)0.9542 (2)0.0396 (8)
H3A0.97580.70150.97820.048*
C41.09106 (16)0.6115 (2)1.0948 (2)0.0344 (7)
H4A1.10630.55311.12040.041*
H4B1.06500.63771.12980.041*
C51.15158 (15)0.6686 (2)1.10402 (19)0.0302 (6)
C61.21887 (16)0.7856 (2)1.1250 (2)0.0347 (7)
C71.24868 (19)0.8692 (2)1.1402 (3)0.0483 (9)
H7C1.22510.91941.14800.058*
C81.3160 (2)0.8734 (3)1.1431 (3)0.0519 (9)
H8C1.33810.92821.15290.062*
C91.35128 (18)0.7980 (3)1.1318 (3)0.0506 (9)
H9C1.39640.80371.13530.061*
C101.32114 (17)0.7154 (2)1.1157 (2)0.0419 (8)
H10C1.34460.66531.10740.050*
C111.25365 (15)0.7105 (2)1.1124 (2)0.0327 (7)
C120.90560 (15)0.3445 (2)0.6650 (2)0.0314 (6)
C130.83856 (15)0.2976 (2)0.64489 (19)0.0297 (6)
C140.78386 (15)0.3418 (2)0.6558 (2)0.0332 (7)
H14A0.78840.40090.67490.040*
C150.72163 (16)0.2984 (2)0.6385 (2)0.0357 (7)
C160.71589 (16)0.2091 (2)0.6120 (2)0.0363 (7)
H16A0.67470.17970.60070.044*
C170.77091 (16)0.1639 (2)0.6024 (2)0.0346 (7)
C180.83224 (16)0.2091 (2)0.6178 (2)0.0344 (7)
H18A0.86910.17960.60980.041*
C190.66265 (17)0.3463 (2)0.6498 (3)0.0439 (8)
C200.76632 (18)0.0659 (2)0.5806 (3)0.0435 (8)
U11U22U33U12U13U23
Zn10.0215 (3)0.0258 (3)0.0320 (3)0.0000.0078 (2)0.000
N10.0237 (12)0.0282 (12)0.0380 (14)−0.0005 (10)0.0089 (10)−0.0032 (11)
N20.0276 (12)0.0287 (12)0.0324 (13)−0.0035 (10)0.0104 (10)−0.0038 (10)
N30.0291 (13)0.0262 (12)0.0383 (14)−0.0012 (10)0.0070 (11)0.0028 (11)
N40.0317 (14)0.0321 (14)0.0479 (16)−0.0030 (11)0.0152 (12)−0.0087 (12)
O10.0294 (11)0.0326 (11)0.0417 (12)−0.0077 (9)0.0090 (9)−0.0042 (9)
O20.0372 (13)0.0513 (15)0.0651 (16)−0.0110 (11)0.0276 (12)−0.0135 (12)
O30.0585 (18)0.0375 (15)0.119 (3)−0.0020 (13)0.0428 (18)−0.0142 (16)
O40.0347 (14)0.0558 (17)0.129 (3)−0.0097 (13)0.0275 (16)−0.0182 (18)
O50.0418 (15)0.0241 (12)0.111 (3)−0.0081 (10)0.0193 (15)−0.0041 (13)
O60.0515 (17)0.0367 (15)0.115 (3)−0.0043 (12)0.0364 (17)−0.0187 (14)
O70.078 (2)0.065 (2)0.129 (3)−0.0150 (17)0.060 (2)−0.018 (2)
O80.100 (3)0.089 (3)0.111 (3)0.001 (2)0.020 (3)0.001 (2)
O90.117 (5)0.204 (7)0.321 (10)0.020 (5)0.074 (6)−0.060 (7)
O100.317 (14)0.76 (3)0.254 (12)0.332 (17)0.204 (12)0.243 (16)
C10.0241 (14)0.0280 (15)0.0376 (16)−0.0019 (11)0.0087 (12)−0.0011 (12)
C20.0307 (16)0.0373 (17)0.0415 (18)0.0074 (13)0.0055 (13)−0.0038 (14)
C30.0378 (17)0.0364 (17)0.0443 (18)0.0087 (14)0.0135 (15)−0.0062 (14)
C40.0345 (16)0.0372 (16)0.0318 (15)−0.0090 (13)0.0113 (13)−0.0024 (13)
C50.0302 (15)0.0292 (15)0.0298 (15)−0.0035 (12)0.0083 (12)−0.0002 (12)
C60.0341 (16)0.0323 (16)0.0349 (16)−0.0050 (13)0.0077 (13)−0.0040 (13)
C70.053 (2)0.0324 (18)0.060 (2)−0.0087 (16)0.0192 (18)−0.0079 (16)
C80.051 (2)0.043 (2)0.058 (2)−0.0209 (18)0.0141 (18)−0.0030 (17)
C90.0346 (18)0.061 (2)0.053 (2)−0.0129 (17)0.0102 (16)0.0041 (18)
C100.0336 (17)0.0413 (19)0.049 (2)0.0004 (14)0.0110 (15)0.0042 (15)
C110.0312 (15)0.0283 (15)0.0347 (16)−0.0033 (12)0.0059 (12)0.0020 (12)
C120.0313 (15)0.0315 (15)0.0306 (15)−0.0058 (12)0.0092 (12)0.0026 (12)
C130.0292 (15)0.0295 (15)0.0282 (14)−0.0068 (12)0.0065 (12)0.0010 (12)
C140.0341 (16)0.0243 (14)0.0388 (17)−0.0066 (12)0.0092 (13)−0.0024 (12)
C150.0303 (16)0.0310 (16)0.0436 (18)−0.0041 (13)0.0093 (13)−0.0014 (13)
C160.0304 (16)0.0294 (16)0.0460 (18)−0.0070 (13)0.0084 (13)0.0007 (13)
C170.0315 (16)0.0273 (15)0.0429 (18)−0.0067 (12)0.0097 (13)−0.0013 (13)
C180.0309 (16)0.0330 (16)0.0405 (17)−0.0047 (13)0.0137 (13)−0.0020 (13)
C190.0345 (18)0.0325 (17)0.063 (2)−0.0033 (14)0.0139 (16)−0.0040 (16)
C200.0409 (19)0.0302 (17)0.058 (2)−0.0065 (15)0.0153 (16)−0.0036 (15)
Zn1—O11.941 (2)C1—H1A0.9300
Zn1—O1i1.941 (2)C2—C31.344 (5)
Zn1—N12.008 (2)C2—H2A0.9300
Zn1—N1i2.008 (2)C3—H3A0.9300
N1—C11.320 (4)C4—C51.493 (4)
N1—C21.385 (4)C4—H4A0.9700
N2—C11.338 (4)C4—H4B0.9700
N2—C31.367 (4)C6—C71.384 (5)
N2—C41.463 (4)C6—C111.390 (4)
N3—C51.322 (4)C7—C81.392 (5)
N3—C111.388 (4)C7—H7C0.9300
N4—C51.334 (4)C8—C91.392 (6)
N4—C61.388 (4)C8—H8C0.9300
N4—H40.8600C9—C101.375 (5)
O1—C121.278 (4)C9—H9C0.9300
O2—C121.233 (4)C10—C111.394 (5)
O3—C191.266 (4)C10—H10C0.9300
O3—H30.8200C12—C131.503 (4)
O4—C191.253 (4)C13—C141.378 (4)
O5—C201.272 (4)C13—C181.386 (4)
O5—H50.8200C14—C151.396 (4)
O6—C201.236 (4)C14—H14A0.9300
O7—H7A0.8500C15—C161.395 (4)
O7—H7B0.8492C15—C191.485 (5)
O8—H8A0.8501C16—C171.384 (5)
O8—H8B0.8502C16—H16A0.9300
O9—H9A0.8500C17—C181.397 (4)
O9—H9B0.8501C17—C201.505 (4)
O10—H10A0.8502C18—H18A0.9300
O10—H10B0.8498
O1—Zn1—O1i128.52 (13)N4—C6—C11105.8 (3)
O1—Zn1—N1108.11 (10)C6—C7—C8116.0 (3)
O1i—Zn1—N1100.57 (10)C6—C7—H7C122.0
O1—Zn1—N1i100.57 (10)C8—C7—H7C122.0
O1i—Zn1—N1i108.11 (10)C7—C8—C9121.9 (3)
N1—Zn1—N1i110.65 (15)C7—C8—H8C119.0
C1—N1—C2105.8 (3)C9—C8—H8C119.0
C1—N1—Zn1123.9 (2)C10—C9—C8121.8 (3)
C2—N1—Zn1130.3 (2)C10—C9—H9C119.1
C1—N2—C3108.0 (2)C8—C9—H9C119.1
C1—N2—C4125.9 (3)C9—C10—C11116.7 (3)
C3—N2—C4126.2 (3)C9—C10—H10C121.6
C5—N3—C11107.3 (3)C11—C10—H10C121.6
C5—N4—C6108.1 (3)N3—C11—C6107.7 (3)
C5—N4—H4125.9N3—C11—C10131.0 (3)
C6—N4—H4125.9C6—C11—C10121.3 (3)
C12—O1—Zn1116.8 (2)O2—C12—O1123.7 (3)
C19—O3—H3109.5O2—C12—C13121.3 (3)
C20—O5—H5109.5O1—C12—C13115.0 (3)
H7A—O7—H7B119.4C14—C13—C18119.9 (3)
H8A—O8—H8B90.1C14—C13—C12120.1 (3)
H9A—O9—H9B109.5C18—C13—C12119.9 (3)
H10A—O10—H10B98.7C13—C14—C15120.5 (3)
N1—C1—N2110.7 (3)C13—C14—H14A119.7
N1—C1—H1A124.7C15—C14—H14A119.7
N2—C1—H1A124.7C16—C15—C14119.2 (3)
C3—C2—N1109.3 (3)C16—C15—C19120.4 (3)
C3—C2—H2A125.4C14—C15—C19120.4 (3)
N1—C2—H2A125.4C17—C16—C15120.6 (3)
C2—C3—N2106.3 (3)C17—C16—H16A119.7
C2—C3—H3A126.9C15—C16—H16A119.7
N2—C3—H3A126.9C16—C17—C18119.3 (3)
N2—C4—C5112.4 (2)C16—C17—C20120.7 (3)
N2—C4—H4A109.1C18—C17—C20119.9 (3)
C5—C4—H4A109.1C13—C18—C17120.4 (3)
N2—C4—H4B109.1C13—C18—H18A119.8
C5—C4—H4B109.1C17—C18—H18A119.8
H4A—C4—H4B107.9O4—C19—O3123.9 (3)
N3—C5—N4111.1 (3)O4—C19—C15118.6 (3)
N3—C5—C4124.1 (3)O3—C19—C15117.5 (3)
N4—C5—C4124.8 (3)O6—C20—O5124.1 (3)
C7—C6—N4132.0 (3)O6—C20—C17119.6 (3)
C7—C6—C11122.2 (3)O5—C20—C17116.3 (3)
O1—Zn1—N1—C1121.9 (2)C5—N3—C11—C10178.6 (3)
O1i—Zn1—N1—C1−14.8 (3)C7—C6—C11—N3179.9 (3)
N1i—Zn1—N1—C1−128.9 (3)N4—C6—C11—N30.0 (3)
O1—Zn1—N1—C2−60.7 (3)C7—C6—C11—C100.8 (5)
O1i—Zn1—N1—C2162.6 (3)N4—C6—C11—C10−179.1 (3)
N1i—Zn1—N1—C248.5 (3)C9—C10—C11—N3−178.9 (3)
O1i—Zn1—O1—C12−34.72 (19)C9—C10—C11—C6−0.1 (5)
N1—Zn1—O1—C12−155.2 (2)Zn1—O1—C12—O2−6.1 (4)
N1i—Zn1—O1—C1288.8 (2)Zn1—O1—C12—C13172.90 (18)
C2—N1—C1—N20.5 (3)O2—C12—C13—C14−166.9 (3)
Zn1—N1—C1—N2178.40 (19)O1—C12—C13—C1414.1 (4)
C3—N2—C1—N1−0.2 (3)O2—C12—C13—C1814.9 (4)
C4—N2—C1—N1−179.1 (3)O1—C12—C13—C18−164.2 (3)
C1—N1—C2—C3−0.6 (4)C18—C13—C14—C15−0.9 (5)
Zn1—N1—C2—C3−178.3 (2)C12—C13—C14—C15−179.2 (3)
N1—C2—C3—N20.5 (4)C13—C14—C15—C161.5 (5)
C1—N2—C3—C2−0.2 (4)C13—C14—C15—C19−179.6 (3)
C4—N2—C3—C2178.7 (3)C14—C15—C16—C17−0.4 (5)
C1—N2—C4—C586.6 (4)C19—C15—C16—C17−179.3 (3)
C3—N2—C4—C5−92.1 (4)C15—C16—C17—C18−1.2 (5)
C11—N3—C5—N40.7 (3)C15—C16—C17—C20175.5 (3)
C11—N3—C5—C4−178.9 (3)C14—C13—C18—C17−0.7 (5)
C6—N4—C5—N3−0.8 (4)C12—C13—C18—C17177.5 (3)
C6—N4—C5—C4178.9 (3)C16—C17—C18—C131.8 (5)
N2—C4—C5—N3−87.7 (4)C20—C17—C18—C13−175.0 (3)
N2—C4—C5—N492.7 (4)C16—C15—C19—O4−2.6 (5)
C5—N4—C6—C7−179.5 (4)C14—C15—C19—O4178.5 (3)
C5—N4—C6—C110.5 (3)C16—C15—C19—O3174.8 (4)
N4—C6—C7—C8179.3 (3)C14—C15—C19—O3−4.1 (5)
C11—C6—C7—C8−0.6 (5)C16—C17—C20—O6−172.3 (4)
C6—C7—C8—C9−0.3 (6)C18—C17—C20—O64.4 (5)
C7—C8—C9—C101.0 (6)C16—C17—C20—O54.9 (5)
C8—C9—C10—C11−0.8 (5)C18—C17—C20—O5−178.4 (3)
C5—N3—C11—C6−0.4 (3)
D—H···AD—HH···AD···AD—H···A
O8—H8A···O90.852.222.936 (8)142.
O9—H9A···O40.852.152.634 (7)115.
O9—H9B···O100.852.242.783 (12)122.
O10—H10A···O90.851.932.783 (12)179.
N4—H4···O7ii0.861.972.808 (4)163.
O3—H3···O10iii0.822.563.341 (10)159.
O5—H5···N3iv0.821.772.577 (3)165.
O7—H7A···O2v0.851.982.784 (4)156.
O7—H7B···O8vi0.851.952.796 (5)179.
O8—H8B···O6vii0.852.022.799 (6)152.
O10—H10B···O6viii0.852.032.728 (9)139.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O8—H8A⋯O90.852.222.936 (8)142
O9—H9A⋯O40.852.152.634 (7)115
O9—H9B⋯O100.852.242.783 (12)122
O10—H10A⋯O90.851.932.783 (12)179
N4—H4⋯O7i0.861.972.808 (4)163
O3—H3⋯O10ii0.822.563.341 (10)159
O5—H5⋯N3iii0.821.772.577 (3)165
O7—H7A⋯O2iv0.851.982.784 (4)156
O7—H7B⋯O8v0.851.952.796 (5)179
O8—H8B⋯O6vi0.852.022.799 (6)152
O10—H10B⋯O6vii0.852.032.728 (9)139

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  2 in total

1.  Bis{1-[(1H-benzotriazol-1-yl)meth-yl]-2-methyl-1H-imidazole-κN(3)}dichlorido-cobalt(II).

Authors:  Haiyan Yang; Yinghua Li; Yaomin Zhao; Wenzhuo Li; Fang He
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-20

2.  Bis{1-[(1H-benzotriazol-1-yl)meth-yl]-2-methyl-1H-imdazole-κN(3)}dichlorido-zinc.

Authors:  Haiyan Yang; Yinghua Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-26
  2 in total

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