Literature DB >> 22807773

Bis{1-[(1H-benzotriazol-1-yl)meth-yl]-2-methyl-1H-imidazole-κN(3)}dichlorido-cobalt(II).

Haiyan Yang1, Yinghua Li, Yaomin Zhao, Wenzhuo Li, Fang He.   

Abstract

In the title mononuclear complex, [CoCl(2)(C(11)H(11)N(5))(2)], the Co(II) atom is four-coordinated by two ligand N atoms and two Cl atoms in a distorted tetra-hedral geometry. In the crystal, mol-ecules are stacked through π-π inter-actions [centroid-centroid distances = 3.473 (2), 3.807 (3), 3.883 (2) and 3.676 (2) Å], forming a three-dimensional supra-molecular network.

Entities:  

Year:  2012        PMID: 22807773      PMCID: PMC3393205          DOI: 10.1107/S1600536812026712

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to complexes constructed from N-heterocyclic ligands, see: Yang et al. (2009 ▶); Meng et al. (2009 ▶); Mu et al. (2011 ▶); Zhao et al. (2012 ▶).

Experimental

Crystal data

[CoCl2(C11H11N5)2] M = 556.33 Triclinic, a = 8.1684 (16) Å b = 12.691 (3) Å c = 13.289 (3) Å α = 65.48 (3)° β = 79.66 (3)° γ = 84.30 (3)° V = 1232.5 (6) Å3 Z = 2 Mo Kα radiation μ = 0.95 mm−1 T = 293 K 0.22 × 0.21 × 0.18 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: numerical (CrystalClear; Rigaku/MSC, 2006 ▶) T min = 0.819, T max = 0.848 12593 measured reflections 4330 independent reflections 3512 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.101 S = 1.08 4330 reflections 318 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2006 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812026712/vm2178sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812026712/vm2178Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CoCl2(C11H11N5)2]Z = 2
Mr = 556.33F(000) = 570
Triclinic, P1Dx = 1.499 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1684 (16) ÅCell parameters from 3451 reflections
b = 12.691 (3) Åθ = 2.5–29.2°
c = 13.289 (3) ŵ = 0.95 mm1
α = 65.48 (3)°T = 293 K
β = 79.66 (3)°Prism, blue
γ = 84.30 (3)°0.22 × 0.21 × 0.18 mm
V = 1232.5 (6) Å3
Rigaku Saturn diffractometer4330 independent reflections
Radiation source: fine-focus sealed tube3512 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.039
Detector resolution: 28.5714 pixels mm-1θmax = 25.0°, θmin = 2.5°
ω scansh = −9→9
Absorption correction: numerical (CrystalClear; Rigaku/MSC, 2006)k = −15→15
Tmin = 0.819, Tmax = 0.848l = −15→15
12593 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.101w = 1/[σ2(Fo2) + (0.0391P)2 + 0.5956P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.001
4330 reflectionsΔρmax = 0.27 e Å3
318 parametersΔρmin = −0.23 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008)
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0016 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.74031 (5)0.25471 (4)1.02928 (4)0.03397 (15)
Cl20.96039 (10)0.29359 (8)1.08673 (7)0.0442 (2)
Cl10.54177 (11)0.15986 (8)1.17231 (7)0.0499 (3)
N100.8046 (3)0.1424 (2)0.9553 (2)0.0355 (6)
N90.9277 (3)0.0521 (2)0.8515 (2)0.0361 (6)
N80.5347 (3)0.5454 (2)0.7929 (2)0.0347 (6)
N70.6681 (3)0.4063 (2)0.9140 (2)0.0356 (6)
N60.3355 (3)0.5794 (2)0.6656 (2)0.0366 (6)
N51.0308 (3)0.0933 (2)0.6572 (2)0.0355 (6)
N40.1979 (4)0.5126 (3)0.7064 (2)0.0506 (8)
C220.5192 (4)0.4454 (3)0.8859 (3)0.0341 (7)
C210.3696 (4)0.6166 (3)0.5519 (3)0.0351 (8)
C201.0485 (4)0.0219 (3)0.7720 (3)0.0402 (8)
H20A1.15990.02960.78360.048*
H20B1.0357−0.05850.78650.048*
C190.9193 (4)0.0867 (3)0.5953 (3)0.0355 (8)
C180.7811 (4)0.4857 (3)0.8355 (3)0.0412 (8)
H180.89570.48050.83470.049*
C171.0626 (4)0.2316 (3)0.8261 (3)0.0518 (10)
H17A1.05850.27620.86980.078*
H17B1.04340.28200.75170.078*
H17C1.17010.19390.82280.078*
N31.1490 (4)0.1713 (3)0.5909 (3)0.0506 (8)
C160.7157 (4)0.0454 (3)0.9789 (3)0.0458 (9)
H160.61920.02221.03070.055*
C150.9326 (4)0.1432 (3)0.8783 (3)0.0336 (7)
C140.7008 (4)0.5706 (3)0.7612 (3)0.0431 (9)
H140.74780.63430.70010.052*
C130.3999 (4)0.6178 (3)0.7388 (3)0.0412 (8)
H13A0.30960.62060.79620.049*
H13B0.43910.69600.69570.049*
N20.1465 (4)0.5038 (3)0.6233 (3)0.0545 (8)
C120.9755 (4)0.1649 (3)0.4876 (3)0.0429 (9)
N11.1164 (4)0.2153 (3)0.4899 (3)0.0561 (9)
C110.4878 (4)0.6888 (3)0.4702 (3)0.0516 (10)
H110.57040.72100.48760.062*
C100.2473 (4)0.5673 (3)0.5262 (3)0.0409 (8)
C90.3583 (4)0.3907 (3)0.9458 (3)0.0548 (10)
H9A0.31990.35360.90470.082*
H9B0.27780.44890.95240.082*
H9C0.37270.33411.01900.082*
C80.7901 (4)−0.0098 (3)0.9155 (3)0.0477 (9)
H80.7552−0.07710.91500.057*
C70.7637 (6)0.1099 (4)0.4233 (4)0.0684 (13)
H70.70860.11530.36580.082*
C60.7829 (4)0.0189 (3)0.6201 (3)0.0506 (9)
H60.7453−0.03310.69260.061*
C50.7071 (5)0.0326 (4)0.5325 (4)0.0657 (12)
H50.6143−0.01090.54560.079*
C40.2367 (5)0.5902 (4)0.4153 (3)0.0541 (10)
H40.15490.55800.39730.065*
C30.8964 (6)0.1772 (4)0.3983 (3)0.0606 (11)
H30.93300.22900.32550.073*
C20.3513 (5)0.6615 (4)0.3352 (3)0.0623 (11)
H20.34760.67880.26040.075*
C10.4746 (5)0.7095 (4)0.3621 (3)0.0645 (12)
H10.55100.75750.30430.077*
U11U22U33U12U13U23
Co10.0345 (3)0.0377 (3)0.0270 (2)−0.00561 (19)−0.00427 (19)−0.0096 (2)
Cl20.0399 (5)0.0547 (5)0.0383 (5)−0.0103 (4)−0.0084 (4)−0.0162 (4)
Cl10.0476 (5)0.0608 (6)0.0335 (5)−0.0190 (4)0.0048 (4)−0.0121 (4)
N100.0339 (15)0.0412 (16)0.0308 (15)−0.0087 (12)−0.0017 (13)−0.0135 (13)
N90.0444 (16)0.0333 (15)0.0281 (15)−0.0064 (13)−0.0051 (13)−0.0090 (12)
N80.0347 (15)0.0357 (15)0.0331 (15)−0.0004 (12)−0.0090 (12)−0.0121 (13)
N70.0327 (15)0.0389 (16)0.0318 (15)−0.0045 (12)−0.0031 (12)−0.0109 (13)
N60.0350 (15)0.0396 (16)0.0366 (16)−0.0028 (12)−0.0104 (13)−0.0144 (13)
N50.0402 (16)0.0354 (15)0.0287 (15)−0.0065 (12)−0.0038 (13)−0.0102 (12)
N40.0496 (19)0.056 (2)0.0401 (18)−0.0179 (15)−0.0051 (15)−0.0106 (15)
C220.0317 (18)0.0379 (19)0.0318 (18)−0.0050 (14)−0.0030 (15)−0.0130 (15)
C210.0297 (18)0.0391 (19)0.0383 (19)0.0046 (15)−0.0070 (15)−0.0178 (16)
C200.047 (2)0.041 (2)0.0327 (19)0.0042 (16)−0.0083 (16)−0.0154 (16)
C190.0361 (18)0.0365 (19)0.0354 (19)0.0007 (15)−0.0055 (15)−0.0164 (16)
C180.0285 (18)0.050 (2)0.039 (2)−0.0075 (16)−0.0031 (16)−0.0114 (17)
C170.055 (2)0.054 (2)0.048 (2)−0.0167 (19)0.0076 (19)−0.0263 (19)
N30.058 (2)0.0488 (18)0.0410 (18)−0.0219 (16)0.0027 (16)−0.0144 (15)
C160.044 (2)0.053 (2)0.042 (2)−0.0197 (18)0.0044 (17)−0.0209 (18)
C150.0377 (18)0.0326 (18)0.0294 (17)−0.0040 (14)−0.0092 (15)−0.0092 (15)
C140.040 (2)0.041 (2)0.038 (2)−0.0114 (16)−0.0046 (16)−0.0040 (16)
C130.045 (2)0.040 (2)0.043 (2)0.0046 (16)−0.0163 (17)−0.0192 (17)
N20.0509 (19)0.065 (2)0.048 (2)−0.0192 (16)−0.0110 (16)−0.0184 (17)
C120.055 (2)0.038 (2)0.033 (2)0.0056 (17)−0.0085 (17)−0.0136 (16)
N10.074 (2)0.0477 (19)0.0361 (18)−0.0151 (17)0.0057 (16)−0.0091 (15)
C110.036 (2)0.061 (2)0.055 (2)−0.0104 (18)−0.0029 (18)−0.021 (2)
C100.0387 (19)0.046 (2)0.042 (2)−0.0005 (16)−0.0097 (17)−0.0205 (17)
C90.036 (2)0.065 (3)0.048 (2)−0.0130 (18)−0.0003 (18)−0.009 (2)
C80.058 (2)0.046 (2)0.040 (2)−0.0248 (19)0.0001 (18)−0.0167 (18)
C70.074 (3)0.084 (3)0.073 (3)0.040 (3)−0.048 (3)−0.051 (3)
C60.044 (2)0.056 (2)0.053 (2)−0.0062 (18)−0.0097 (19)−0.022 (2)
C50.046 (2)0.082 (3)0.084 (3)0.009 (2)−0.026 (2)−0.044 (3)
C40.053 (2)0.071 (3)0.049 (2)0.000 (2)−0.015 (2)−0.032 (2)
C30.084 (3)0.059 (3)0.038 (2)0.028 (2)−0.020 (2)−0.022 (2)
C20.065 (3)0.085 (3)0.043 (2)0.002 (2)−0.009 (2)−0.032 (2)
C10.057 (3)0.083 (3)0.041 (2)−0.015 (2)0.010 (2)−0.018 (2)
Co1—N72.012 (3)C17—H17A0.9600
Co1—N102.026 (3)C17—H17B0.9600
Co1—Cl22.2449 (10)C17—H17C0.9600
Co1—Cl12.2527 (14)N3—N11.289 (4)
N10—C151.323 (4)C16—C81.339 (5)
N10—C161.385 (4)C16—H160.9300
N9—C151.350 (4)C14—H140.9300
N9—C81.372 (4)C13—H13A0.9700
N9—C201.457 (4)C13—H13B0.9700
N8—C221.351 (4)N2—C101.371 (4)
N8—C141.375 (4)C12—N11.381 (5)
N8—C131.452 (4)C12—C31.396 (5)
N7—C221.324 (4)C11—C11.372 (5)
N7—C181.387 (4)C11—H110.9300
N6—N41.365 (4)C10—C41.396 (5)
N6—C211.366 (4)C9—H9A0.9600
N6—C131.446 (4)C9—H9B0.9600
N5—N31.360 (4)C9—H9C0.9600
N5—C191.361 (4)C8—H80.9300
N5—C201.441 (4)C7—C31.355 (6)
N4—N21.298 (4)C7—C51.397 (6)
C22—C91.480 (4)C7—H70.9300
C21—C101.390 (4)C6—C51.355 (5)
C21—C111.387 (5)C6—H60.9300
C20—H20A0.9700C5—H50.9300
C20—H20B0.9700C4—C21.357 (5)
C19—C61.383 (4)C4—H40.9300
C19—C121.386 (4)C3—H30.9300
C18—C141.332 (5)C2—C11.395 (6)
C18—H180.9300C2—H20.9300
C17—C151.480 (4)C1—H10.9300
N7—Co1—N10108.31 (11)N10—C15—N9110.3 (3)
N7—Co1—Cl2106.00 (8)N10—C15—C17125.8 (3)
N10—Co1—Cl2111.09 (8)N9—C15—C17123.9 (3)
N7—Co1—Cl1115.96 (8)C18—C14—N8106.3 (3)
N10—Co1—Cl1102.74 (8)C18—C14—H14126.8
Cl2—Co1—Cl1112.73 (4)N8—C14—H14126.8
C15—N10—C16106.0 (3)N6—C13—N8114.5 (3)
C15—N10—Co1129.7 (2)N6—C13—H13A108.6
C16—N10—Co1124.2 (2)N8—C13—H13A108.6
C15—N9—C8107.5 (3)N6—C13—H13B108.6
C15—N9—C20126.7 (3)N8—C13—H13B108.6
C8—N9—C20125.7 (3)H13A—C13—H13B107.6
C22—N8—C14108.1 (3)N4—N2—C10108.7 (3)
C22—N8—C13126.5 (3)N1—C12—C19108.3 (3)
C14—N8—C13125.4 (3)N1—C12—C3130.9 (4)
C22—N7—C18106.3 (3)C19—C12—C3120.7 (4)
C22—N7—Co1130.8 (2)N3—N1—C12108.7 (3)
C18—N7—Co1122.4 (2)C1—C11—C21115.5 (3)
N4—N6—C21110.0 (3)C1—C11—H11122.2
N4—N6—C13118.9 (3)C21—C11—H11122.2
C21—N6—C13129.8 (3)N2—C10—C21108.9 (3)
N3—N5—C19110.3 (3)N2—C10—C4130.2 (3)
N3—N5—C20119.8 (3)C21—C10—C4120.9 (3)
C19—N5—C20129.4 (3)C22—C9—H9A109.5
N2—N4—N6108.5 (3)C22—C9—H9B109.5
N7—C22—N8109.6 (3)H9A—C9—H9B109.5
N7—C22—C9126.4 (3)C22—C9—H9C109.5
N8—C22—C9124.0 (3)H9A—C9—H9C109.5
N6—C21—C10103.9 (3)H9B—C9—H9C109.5
N6—C21—C11133.7 (3)C16—C8—N9106.7 (3)
C10—C21—C11122.3 (3)C16—C8—H8126.6
N5—C20—N9112.9 (3)N9—C8—H8126.6
N5—C20—H20A109.0C3—C7—C5122.1 (4)
N9—C20—H20A109.0C3—C7—H7119.0
N5—C20—H20B109.0C5—C7—H7119.0
N9—C20—H20B109.0C5—C6—C19116.2 (4)
H20A—C20—H20B107.8C5—C6—H6121.9
N5—C19—C6133.5 (3)C19—C6—H6121.9
N5—C19—C12104.1 (3)C6—C5—C7122.2 (4)
C6—C19—C12122.3 (3)C6—C5—H5118.9
C14—C18—N7109.7 (3)C7—C5—H5118.9
C14—C18—H18125.1C2—C4—C10117.0 (3)
N7—C18—H18125.1C2—C4—H4121.5
C15—C17—H17A109.5C10—C4—H4121.5
C15—C17—H17B109.5C7—C3—C12116.6 (4)
H17A—C17—H17B109.5C7—C3—H3121.7
C15—C17—H17C109.5C12—C3—H3121.7
H17A—C17—H17C109.5C4—C2—C1121.6 (4)
H17B—C17—H17C109.5C4—C2—H2119.2
N1—N3—N5108.6 (3)C1—C2—H2119.2
C8—C16—N10109.4 (3)C11—C1—C2122.7 (4)
C8—C16—H16125.3C11—C1—H1118.7
N10—C16—H16125.3C2—C1—H1118.7
N7—Co1—N10—C1568.8 (3)Co1—N10—C15—C17−0.5 (5)
Cl2—Co1—N10—C15−47.3 (3)C8—N9—C15—N10−0.4 (4)
Cl1—Co1—N10—C15−168.0 (3)C20—N9—C15—N10−178.6 (3)
N7—Co1—N10—C16−111.3 (3)C8—N9—C15—C17−179.4 (3)
Cl2—Co1—N10—C16132.7 (2)C20—N9—C15—C172.4 (5)
Cl1—Co1—N10—C1611.9 (3)N7—C18—C14—N80.2 (4)
N10—Co1—N7—C2291.0 (3)C22—N8—C14—C180.0 (4)
Cl2—Co1—N7—C22−149.7 (3)C13—N8—C14—C18176.8 (3)
Cl1—Co1—N7—C22−23.8 (3)N4—N6—C13—N895.8 (4)
N10—Co1—N7—C18−79.4 (3)C21—N6—C13—N8−98.6 (4)
Cl2—Co1—N7—C1839.9 (3)C22—N8—C13—N6−81.8 (4)
Cl1—Co1—N7—C18165.8 (2)C14—N8—C13—N6102.0 (4)
C21—N6—N4—N21.7 (4)N6—N4—N2—C10−1.6 (4)
C13—N6—N4—N2169.9 (3)N5—C19—C12—N1−0.5 (4)
C18—N7—C22—N80.4 (4)C6—C19—C12—N1−177.7 (3)
Co1—N7—C22—N8−171.2 (2)N5—C19—C12—C3176.2 (3)
C18—N7—C22—C9−179.2 (3)C6—C19—C12—C3−0.9 (5)
Co1—N7—C22—C99.2 (5)N5—N3—N1—C12−0.9 (4)
C14—N8—C22—N7−0.3 (4)C19—C12—N1—N30.9 (4)
C13—N8—C22—N7−177.0 (3)C3—C12—N1—N3−175.4 (4)
C14—N8—C22—C9179.3 (3)N6—C21—C11—C1−176.7 (4)
C13—N8—C22—C92.7 (5)C10—C21—C11—C10.8 (5)
N4—N6—C21—C10−1.0 (3)N4—N2—C10—C210.9 (4)
C13—N6—C21—C10−167.6 (3)N4—N2—C10—C4−175.8 (4)
N4—N6—C21—C11176.8 (4)N6—C21—C10—N20.1 (4)
C13—N6—C21—C1110.2 (6)C11—C21—C10—N2−178.1 (3)
N3—N5—C20—N9110.2 (3)N6—C21—C10—C4177.2 (3)
C19—N5—C20—N9−79.0 (4)C11—C21—C10—C4−1.0 (5)
C15—N9—C20—N5−77.1 (4)N10—C16—C8—N90.2 (4)
C8—N9—C20—N5105.0 (4)C15—N9—C8—C160.1 (4)
N3—N5—C19—C6176.6 (4)C20—N9—C8—C16178.3 (3)
C20—N5—C19—C65.1 (6)N5—C19—C6—C5−175.7 (4)
N3—N5—C19—C120.0 (3)C12—C19—C6—C50.4 (5)
C20—N5—C19—C12−171.5 (3)C19—C6—C5—C70.5 (6)
C22—N7—C18—C14−0.4 (4)C3—C7—C5—C6−1.0 (7)
Co1—N7—C18—C14172.1 (2)N2—C10—C4—C2176.8 (4)
C19—N5—N3—N10.6 (4)C21—C10—C4—C20.4 (6)
C20—N5—N3—N1173.0 (3)C5—C7—C3—C120.5 (6)
C15—N10—C16—C8−0.5 (4)N1—C12—C3—C7176.3 (4)
Co1—N10—C16—C8179.6 (2)C19—C12—C3—C70.4 (5)
C16—N10—C15—N90.5 (4)C10—C4—C2—C10.3 (6)
Co1—N10—C15—N9−179.5 (2)C21—C11—C1—C2−0.1 (6)
C16—N10—C15—C17179.5 (3)C4—C2—C1—C11−0.4 (7)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3D coordination framework with uncommon two-fold interpenetrated {3(3)5(9)6(3)}-lcy net and coordinated anion exchange.

Authors:  Haiyan Yang; Linke Li; Jie Wu; Hongwei Hou; Bo Xiao; Yaoting Fan
Journal:  Chemistry       Date:  2009       Impact factor: 5.236

3.  Bis{1-[(1H-benzimidazol-2-yl)meth-yl]-1H-imidazole-κN}-bis-(3,5-dicarb-oxy-benzoato-κO)zinc octa-hydrate.

Authors:  Lei Zhao; Bingtao Liu; Ting Li; Xiangru Meng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-18
  3 in total

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