Literature DB >> 22719362

Bis{1-[(1H-benzotriazol-1-yl)meth-yl]-2-methyl-1H-imdazole-κN(3)}dichlorido-zinc.

Haiyan Yang1, Yinghua Li.   

Abstract

In the mononuclear title compound, [ZnCl(2)(C(11)H(11)N(5))(2)], the Zn(II) atom is coordinated by two Cl atoms and two imidazole N atoms in a distorted tetra-hedral geometry. Adjacent complex mol-ecules are stacked through aromatic π-π inter-actions; the closest distance between adjacent aromatic rings is 3.598 (2) Å.

Entities:  

Year:  2012        PMID: 22719362      PMCID: PMC3379141          DOI: 10.1107/S1600536812022313

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For an introduction to metal-organic networks, see: Chen et al. (2001 ▶). For general background to complexes constructed from N-heterocyclic ligands, see: Yang et al. (2009 ▶); Meng et al. (2009 ▶); Zhao et al. (2012a ▶,b ▶). For π–π inter­actions, see: Janiak et al. (2000 ▶).

Experimental

Crystal data

[ZnCl2(C11H11N5)2] M = 562.79 Triclinic, a = 8.1625 (16) Å b = 12.692 (3) Å c = 13.290 (3) Å α = 65.52 (3)° β = 79.47 (3)° γ = 84.02 (3)° V = 1231.3 (6) Å3 Z = 2 Mo Kα radiation μ = 1.25 mm−1 T = 295 K 0.21 × 0.20 × 0.18 mm

Data collection

Rigaku Saturn CCD diffractometer Absorption correction: numerical (REQAB; Jacobson, 1998 ▶) T min = 0.780, T max = 0.807 9045 measured reflections 4291 independent reflections 3870 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.079 S = 1.02 4291 reflections 318 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2006 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812022313/rk2337sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812022313/rk2337Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[ZnCl2(C11H11N5)2]Z = 2
Mr = 562.79F(000) = 576
Triclinic, P1Dx = 1.518 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1625 (16) ÅCell parameters from 3518 reflections
b = 12.692 (3) Åθ = 2.5–26.0°
c = 13.290 (3) ŵ = 1.25 mm1
α = 65.52 (3)°T = 295 K
β = 79.47 (3)°Block, colourless
γ = 84.02 (3)°0.21 × 0.20 × 0.18 mm
V = 1231.3 (6) Å3
Rigaku Saturn CCD diffractometer4291 independent reflections
Radiation source: fine-focus sealed tube3870 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
Detector resolution: 28.5714 pixels mm-1θmax = 25.0°, θmin = 2.5°
ω scansh = −9→9
Absorption correction: numerical (REQAB; Jacobson, 1998)k = −15→15
Tmin = 0.780, Tmax = 0.807l = −15→15
9045 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.079w = 1/[σ2(Fo2) + (0.0395P)2 + 0.550P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
4291 reflectionsΔρmax = 0.25 e Å3
318 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008)
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0016 (4)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.26096 (3)0.74531 (2)0.46846 (2)0.03355 (10)
C1−0.0640 (4)0.7685 (2)0.6732 (2)0.0512 (7)
H1A−0.05890.72330.62990.077*
H1B−0.17130.80720.67500.077*
H1C−0.04690.71860.74810.077*
C20.6003 (3)0.3826 (2)0.7613 (2)0.0409 (6)
H2A0.56110.30450.80440.049*
H2B0.69080.37960.70390.049*
C30.5257 (4)0.2904 (3)1.1385 (2)0.0641 (8)
H30.44950.24231.19630.077*
C40.1027 (4)0.8220 (3)1.1020 (2)0.0606 (9)
H40.06620.77021.17480.073*
C50.6498 (4)0.3382 (3)1.1651 (2)0.0613 (8)
H50.65430.32041.23990.074*
C60.7635 (4)0.4097 (3)1.0851 (2)0.0531 (7)
H60.84460.44231.10320.064*
C70.2358 (5)0.8891 (3)1.0776 (3)0.0692 (10)
H70.29050.88391.13510.083*
C80.6422 (3)0.6102 (3)0.5543 (2)0.0539 (7)
H8A0.63010.66180.47890.081*
H8B0.72570.55130.55330.081*
H8C0.67530.65300.59190.081*
C90.2172 (3)0.9801 (2)0.8796 (2)0.0505 (7)
H90.25511.03170.80700.061*
C100.2928 (4)0.9661 (3)0.9675 (3)0.0662 (9)
H100.38591.00920.95430.079*
C110.2104 (3)1.0085 (2)0.5854 (2)0.0475 (6)
H110.24521.07550.58650.057*
C120.5123 (3)0.3121 (2)1.0295 (2)0.0499 (7)
H120.42940.28061.01180.060*
C130.0228 (3)0.8343 (2)1.0126 (2)0.0423 (6)
C140.2853 (3)0.9530 (2)0.5215 (2)0.0449 (6)
H140.38220.97580.46980.054*
C150.7536 (3)0.4324 (2)0.9738 (2)0.0399 (6)
C160.2988 (3)0.4307 (2)0.7382 (2)0.0424 (6)
H160.25150.36730.79930.051*
C170.0800 (3)0.9127 (2)0.90483 (19)0.0361 (5)
C180.0675 (3)0.85568 (19)0.62160 (18)0.0337 (5)
C19−0.0489 (3)0.9778 (2)0.72795 (19)0.0390 (6)
H19A−0.03631.05820.71340.047*
H19B−0.16040.97020.71640.047*
C200.6307 (3)0.38376 (19)0.94853 (19)0.0336 (5)
C210.2188 (3)0.5156 (2)0.6632 (2)0.0413 (6)
H210.10430.52070.66320.050*
C220.4817 (3)0.5555 (2)0.61400 (18)0.0337 (5)
Cl10.45953 (8)0.83942 (6)0.32652 (5)0.04840 (17)
Cl20.03843 (8)0.70774 (5)0.41322 (5)0.04285 (16)
N1−0.1179 (3)0.78472 (19)1.01042 (18)0.0547 (6)
N20.8546 (3)0.4955 (2)0.87684 (19)0.0533 (6)
N3−0.1494 (3)0.82872 (19)0.90881 (18)0.0495 (6)
N40.8026 (3)0.48747 (19)0.79389 (18)0.0489 (6)
N5−0.0311 (2)0.90653 (16)0.84270 (15)0.0354 (4)
N60.3321 (2)0.59458 (16)0.58550 (15)0.0348 (4)
N70.0725 (2)0.94689 (16)0.64867 (15)0.0350 (4)
N80.6644 (2)0.42128 (16)0.83454 (16)0.0364 (4)
N90.4650 (2)0.45578 (16)0.70724 (15)0.0347 (4)
N100.1957 (2)0.85662 (16)0.54477 (15)0.0355 (4)
U11U22U33U12U13U23
Zn10.03514 (17)0.03640 (16)0.02612 (15)−0.00623 (11)−0.00370 (11)−0.00895 (11)
C10.0563 (18)0.0530 (16)0.0458 (15)−0.0214 (13)0.0089 (13)−0.0238 (13)
C20.0439 (15)0.0411 (13)0.0426 (14)0.0049 (11)−0.0164 (12)−0.0192 (11)
C30.059 (2)0.077 (2)0.0445 (17)−0.0119 (16)0.0098 (15)−0.0178 (16)
C40.085 (2)0.0578 (18)0.0370 (15)0.0294 (17)−0.0215 (16)−0.0194 (14)
C50.065 (2)0.083 (2)0.0399 (16)0.0015 (17)−0.0088 (15)−0.0293 (16)
C60.0531 (18)0.0654 (18)0.0510 (16)−0.0007 (14)−0.0160 (14)−0.0306 (15)
C70.078 (2)0.082 (2)0.075 (2)0.043 (2)−0.050 (2)−0.053 (2)
C80.0376 (15)0.0638 (18)0.0451 (15)−0.0141 (13)−0.0039 (12)−0.0053 (13)
C90.0418 (15)0.0581 (17)0.0529 (16)−0.0030 (13)−0.0104 (13)−0.0222 (14)
C100.0482 (18)0.082 (2)0.087 (3)0.0086 (16)−0.0295 (18)−0.047 (2)
C110.0572 (17)0.0461 (15)0.0410 (14)−0.0214 (13)0.0012 (13)−0.0186 (12)
C120.0381 (15)0.0631 (17)0.0495 (16)−0.0100 (13)−0.0024 (13)−0.0237 (14)
C130.0550 (17)0.0365 (13)0.0316 (13)0.0073 (12)−0.0056 (12)−0.0125 (11)
C140.0412 (15)0.0540 (16)0.0412 (14)−0.0205 (12)0.0042 (12)−0.0209 (12)
C150.0368 (14)0.0440 (14)0.0427 (14)−0.0005 (11)−0.0105 (11)−0.0196 (11)
C160.0402 (15)0.0434 (14)0.0347 (13)−0.0129 (11)−0.0036 (11)−0.0053 (11)
C170.0384 (14)0.0367 (13)0.0330 (12)0.0015 (10)−0.0064 (11)−0.0143 (10)
C180.0385 (14)0.0339 (12)0.0277 (12)−0.0056 (10)−0.0062 (11)−0.0102 (10)
C190.0469 (15)0.0379 (13)0.0315 (12)0.0023 (11)−0.0077 (11)−0.0135 (10)
C200.0304 (12)0.0365 (12)0.0338 (12)0.0024 (10)−0.0063 (10)−0.0144 (10)
C210.0297 (13)0.0474 (14)0.0388 (14)−0.0090 (11)−0.0015 (11)−0.0094 (11)
C220.0332 (13)0.0389 (13)0.0284 (11)−0.0043 (10)−0.0040 (10)−0.0127 (10)
Cl10.0465 (4)0.0581 (4)0.0330 (3)−0.0189 (3)0.0043 (3)−0.0112 (3)
Cl20.0389 (3)0.0525 (4)0.0368 (3)−0.0112 (3)−0.0077 (3)−0.0147 (3)
N10.0725 (17)0.0467 (13)0.0350 (12)−0.0167 (12)0.0062 (11)−0.0091 (10)
N20.0482 (14)0.0619 (15)0.0474 (13)−0.0193 (11)−0.0101 (11)−0.0148 (12)
N30.0565 (14)0.0484 (12)0.0400 (12)−0.0222 (11)0.0037 (11)−0.0141 (10)
N40.0472 (13)0.0543 (13)0.0394 (12)−0.0158 (11)−0.0071 (10)−0.0096 (10)
N50.0417 (12)0.0358 (10)0.0270 (10)−0.0091 (9)−0.0025 (9)−0.0102 (8)
N60.0319 (11)0.0385 (11)0.0296 (10)−0.0057 (8)−0.0031 (9)−0.0089 (8)
N70.0415 (12)0.0348 (10)0.0263 (9)−0.0062 (9)−0.0036 (9)−0.0093 (8)
N80.0340 (11)0.0387 (11)0.0365 (11)−0.0030 (9)−0.0090 (9)−0.0133 (9)
N90.0363 (11)0.0347 (10)0.0320 (10)−0.0029 (8)−0.0087 (9)−0.0106 (8)
N100.0364 (11)0.0398 (11)0.0309 (10)−0.0097 (8)−0.0014 (9)−0.0145 (9)
Zn1—N62.012 (2)C10—H100.9300
Zn1—N102.035 (2)C11—C141.345 (4)
Zn1—Cl22.2413 (8)C11—N71.370 (3)
Zn1—Cl12.2431 (12)C11—H110.9300
C1—C181.482 (3)C12—C201.383 (4)
C1—H1A0.9600C12—H120.9300
C1—H1B0.9600C13—N11.376 (3)
C1—H1C0.9600C13—C171.390 (3)
C2—N81.449 (3)C14—N101.385 (3)
C2—N91.457 (3)C14—H140.9300
C2—H2A0.9700C15—N21.370 (3)
C2—H2B0.9700C15—C201.388 (3)
C3—C121.381 (4)C16—C211.335 (3)
C3—C51.399 (4)C16—N91.374 (3)
C3—H30.9300C16—H160.9300
C4—C71.358 (5)C17—N51.361 (3)
C4—C131.404 (4)C18—N101.319 (3)
C4—H40.9300C18—N71.353 (3)
C5—C61.353 (4)C19—N51.441 (3)
C5—H50.9300C19—N71.458 (3)
C6—C151.401 (4)C19—H19A0.9700
C6—H60.9300C19—H19B0.9700
C7—C101.405 (5)C20—N81.369 (3)
C7—H70.9300C21—N61.383 (3)
C8—C221.477 (3)C21—H210.9300
C8—H8A0.9600C22—N61.329 (3)
C8—H8B0.9600C22—N91.353 (3)
C8—H8C0.9600N1—N31.294 (3)
C9—C101.359 (4)N2—N41.296 (3)
C9—C171.387 (4)N3—N51.360 (3)
C9—H90.9300N4—N81.367 (3)
N6—Zn1—N10106.75 (8)C17—C13—C4120.2 (3)
N6—Zn1—Cl2106.36 (6)C11—C14—N10109.3 (2)
N10—Zn1—Cl2110.35 (6)C11—C14—H14125.4
N6—Zn1—Cl1116.35 (6)N10—C14—H14125.4
N10—Zn1—Cl1103.11 (6)N2—C15—C20109.1 (2)
Cl2—Zn1—Cl1113.66 (3)N2—C15—C6130.3 (2)
C18—C1—H1A109.5C20—C15—C6120.6 (2)
C18—C1—H1B109.5C21—C16—N9106.3 (2)
H1A—C1—H1B109.5C21—C16—H16126.9
C18—C1—H1C109.5N9—C16—H16126.9
H1A—C1—H1C109.5N5—C17—C13104.0 (2)
H1B—C1—H1C109.5N5—C17—C9133.1 (2)
N8—C2—N9114.16 (19)C13—C17—C9122.8 (2)
N8—C2—H2A108.7N10—C18—N7110.1 (2)
N9—C2—H2A108.7N10—C18—C1126.2 (2)
N8—C2—H2B108.7N7—C18—C1123.7 (2)
N9—C2—H2B108.7N5—C19—N7112.75 (19)
H2A—C2—H2B107.6N5—C19—H19A109.0
C12—C3—C5122.4 (3)N7—C19—H19A109.0
C12—C3—H3118.8N5—C19—H19B109.0
C5—C3—H3118.8N7—C19—H19B109.0
C7—C4—C13117.1 (3)H19A—C19—H19B107.8
C7—C4—H4121.5N8—C20—C12133.3 (2)
C13—C4—H4121.5N8—C20—C15103.8 (2)
C6—C5—C3121.8 (3)C12—C20—C15122.8 (2)
C6—C5—H5119.1C16—C21—N6109.7 (2)
C3—C5—H5119.1C16—C21—H21125.2
C5—C6—C15117.0 (3)N6—C21—H21125.2
C5—C6—H6121.5N6—C22—N9109.2 (2)
C15—C6—H6121.5N6—C22—C8126.3 (2)
C4—C7—C10121.6 (3)N9—C22—C8124.6 (2)
C4—C7—H7119.2N3—N1—C13108.5 (2)
C10—C7—H7119.2N4—N2—C15108.6 (2)
C22—C8—H8A109.5N1—N3—N5108.8 (2)
C22—C8—H8B109.5N2—N4—N8108.6 (2)
H8A—C8—H8B109.5C17—N5—N3110.18 (19)
C22—C8—H8C109.5C17—N5—C19129.7 (2)
H8A—C8—H8C109.5N3—N5—C19119.62 (19)
H8B—C8—H8C109.5C22—N6—C21106.54 (19)
C10—C9—C17115.8 (3)C22—N6—Zn1130.58 (16)
C10—C9—H9122.1C21—N6—Zn1122.47 (15)
C17—C9—H9122.1C18—N7—C11107.9 (2)
C9—C10—C7122.5 (3)C18—N7—C19126.8 (2)
C9—C10—H10118.7C11—N7—C19125.3 (2)
C7—C10—H10118.7N4—N8—C20109.87 (19)
C14—C11—N7106.4 (2)N4—N8—C2118.9 (2)
C14—C11—H11126.8C20—N8—C2129.8 (2)
N7—C11—H11126.8C22—N9—C16108.33 (19)
C20—C12—C3115.4 (3)C22—N9—C2126.1 (2)
C20—C12—H12122.3C16—N9—C2125.4 (2)
C3—C12—H12122.3C18—N10—C14106.4 (2)
N1—C13—C17108.6 (2)C18—N10—Zn1129.92 (16)
N1—C13—C4131.1 (3)C14—N10—Zn1123.69 (17)
C12—C3—C5—C60.6 (5)C16—C21—N6—Zn1−172.67 (17)
C3—C5—C6—C15−1.1 (4)N10—Zn1—N6—C22−91.4 (2)
C13—C4—C7—C10−1.0 (4)Cl2—Zn1—N6—C22150.73 (19)
C17—C9—C10—C7−0.5 (4)Cl1—Zn1—N6—C2223.0 (2)
C4—C7—C10—C91.4 (5)N10—Zn1—N6—C2180.14 (19)
C5—C3—C12—C200.4 (4)Cl2—Zn1—N6—C21−37.69 (19)
C7—C4—C13—N1−176.0 (3)Cl1—Zn1—N6—C21−165.44 (16)
C7—C4—C13—C17−0.1 (4)N10—C18—N7—C110.2 (3)
N7—C11—C14—N10−0.3 (3)C1—C18—N7—C11179.7 (2)
C5—C6—C15—N2−176.4 (3)N10—C18—N7—C19178.32 (19)
C5—C6—C15—C200.7 (4)C1—C18—N7—C19−2.1 (4)
N1—C13—C17—N50.3 (3)C14—C11—N7—C180.1 (3)
C4—C13—C17—N5−176.4 (2)C14—C11—N7—C19−178.1 (2)
N1—C13—C17—C9177.8 (2)N5—C19—N7—C1877.5 (3)
C4—C13—C17—C91.0 (4)N5—C19—N7—C11−104.7 (3)
C10—C9—C17—N5175.9 (3)N2—N4—N8—C20−1.5 (3)
C10—C9—C17—C13−0.7 (4)N2—N4—N8—C2−169.2 (2)
C3—C12—C20—N8176.7 (3)C12—C20—N8—N4−176.8 (3)
C3—C12—C20—C15−0.8 (4)C15—C20—N8—N41.0 (3)
N2—C15—C20—N8−0.1 (3)C12—C20—N8—C2−10.9 (4)
C6—C15—C20—N8−177.8 (2)C15—C20—N8—C2166.9 (2)
N2—C15—C20—C12178.0 (2)N9—C2—N8—N4−96.1 (3)
C6—C15—C20—C120.3 (4)N9—C2—N8—C2099.1 (3)
N9—C16—C21—N6−0.4 (3)N6—C22—N9—C160.4 (3)
C17—C13—N1—N3−0.5 (3)C8—C22—N9—C16−179.2 (2)
C4—C13—N1—N3175.8 (3)N6—C22—N9—C2176.3 (2)
C20—C15—N2—N4−0.8 (3)C8—C22—N9—C2−3.3 (4)
C6—C15—N2—N4176.5 (3)C21—C16—N9—C220.1 (3)
C13—N1—N3—N50.5 (3)C21—C16—N9—C2−175.9 (2)
C15—N2—N4—N81.4 (3)N8—C2—N9—C2282.1 (3)
C13—C17—N5—N30.0 (3)N8—C2—N9—C16−102.7 (3)
C9—C17—N5—N3−177.1 (3)N7—C18—N10—C14−0.4 (3)
C13—C17—N5—C19171.4 (2)C1—C18—N10—C14−179.9 (2)
C9—C17—N5—C19−5.7 (4)N7—C18—N10—Zn1−179.89 (14)
N1—N3—N5—C17−0.3 (3)C1—C18—N10—Zn10.6 (3)
N1—N3—N5—C19−172.7 (2)C11—C14—N10—C180.4 (3)
N7—C19—N5—C1779.1 (3)C11—C14—N10—Zn1179.98 (17)
N7—C19—N5—N3−110.1 (2)N6—Zn1—N10—C18−69.1 (2)
N9—C22—N6—C21−0.6 (3)Cl2—Zn1—N10—C1846.1 (2)
C8—C22—N6—C21178.9 (2)Cl1—Zn1—N10—C18167.84 (18)
N9—C22—N6—Zn1171.97 (15)N6—Zn1—N10—C14111.50 (19)
C8—C22—N6—Zn1−8.5 (4)Cl2—Zn1—N10—C14−133.32 (18)
C16—C21—N6—C220.7 (3)Cl1—Zn1—N10—C14−11.60 (19)
  5 in total

1.  Interwoven metal-organic framework on a periodic minimal surface with extra-large pores.

Authors:  B Chen; M Eddaoudi; S T Hyde; M O'Keeffe; O M Yaghi
Journal:  Science       Date:  2001-02-09       Impact factor: 47.728

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  3D coordination framework with uncommon two-fold interpenetrated {3(3)5(9)6(3)}-lcy net and coordinated anion exchange.

Authors:  Haiyan Yang; Linke Li; Jie Wu; Hongwei Hou; Bo Xiao; Yaoting Fan
Journal:  Chemistry       Date:  2009       Impact factor: 5.236

4.  Diaqua-bis-{1-[(1H-benzimidazol-2-yl)meth-yl]-1H-1,2,4-triazole-κN}bis-(2,4,5-tricarb-oxy-benzoato-κO)cadmium dihydrate.

Authors:  Lei Zhao; Bingtao Liu; Guanghua Jin; Xiangru Meng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11

5.  Bis{1-[(1H-benzimidazol-2-yl)meth-yl]-1H-imidazole-κN}-bis-(3,5-dicarb-oxy-benzoato-κO)zinc octa-hydrate.

Authors:  Lei Zhao; Bingtao Liu; Ting Li; Xiangru Meng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-18
  5 in total

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