Literature DB >> 22325721

Novel venom peptides from the cone snail Conus pulicarius discovered through next-generation sequencing of its venom duct transcriptome.

Arturo O Lluisma1, Brett A Milash, Barry Moore, Baldomero M Olivera, Pradip K Bandyopadhyay.   

Abstract

The venom peptides (i.e., conotoxins or conopeptides) that species in the genus Conus collectively produce are remarkably diverse, estimated to be around 50,000 to 140,000, but the pace of discovery and characterization of these peptides have been rather slow. To date, only a minor fraction have been identified and studied. However, the advent of next-generation DNA sequencing technologies has opened up opportunities for expediting the exploration of this diversity. The whole transcriptome of a venom duct from the vermivorous marine snail C. pulicarius was sequenced using the 454 sequencing platform. Analysis of the data set resulted in the identification of over eighty unique putative conopeptide sequences, the highest number discovered so far from a Conus venom duct transcriptome. More importantly, majority of the sequences were potentially novel, many with unexpected structural features, hinting at the vastness of the diversity of Conus venom peptides that remains to be explored. The sequences represented at least 14 major superfamilies/types (disulfide- and non-disulfide-rich), indicating the structural and functional diversity of conotoxins in the venom of C. pulicarius. In addition, the contryphans were surprisingly more diverse than what is currently known. Comparative analysis of the O-superfamily sequences also revealed insights into the complexity of the processes that drive the evolution and diversification of conotoxins. Copyright Â
© 2011. Published by Elsevier B.V.

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Year:  2012        PMID: 22325721      PMCID: PMC4286325          DOI: 10.1016/j.margen.2011.09.002

Source DB:  PubMed          Journal:  Mar Genomics        ISSN: 1874-7787            Impact factor:   1.710


  28 in total

1.  From the identification of gene organization of alpha conotoxins to the cloning of novel toxins.

Authors:  Duo-Duo Yuan; Yu-Hong Han; Chun-Guang Wang; Cheng-Wu Chi
Journal:  Toxicon       Date:  2007-03-01       Impact factor: 3.033

2.  Discovery of a novel class of conotoxin from Conus litteratus, lt14a, with a unique cysteine pattern.

Authors:  Can Peng; Shaojun Tang; Canhui Pi; Junliang Liu; Fang Wang; Lei Wang; Wenliang Zhou; Anlong Xu
Journal:  Peptides       Date:  2006-06-23       Impact factor: 3.750

Review 3.  Diversity of the neurotoxic Conus peptides: a model for concerted pharmacological discovery.

Authors:  Baldomero M Olivera; Russell W Teichert
Journal:  Mol Interv       Date:  2007-10

4.  Identification of six novel T-1 conotoxins from Conus pulicarius by molecular cloning.

Authors:  Can Peng; Xuechen Wu; Yuhong Han; Duoduo Yuan; Chengwu Chi; Chunguang Wang
Journal:  Peptides       Date:  2007-09-04       Impact factor: 3.750

Review 5.  Next-generation sequencing transforms today's biology.

Authors:  Stephan C Schuster
Journal:  Nat Methods       Date:  2007-12-19       Impact factor: 28.547

6.  Clustal W and Clustal X version 2.0.

Authors:  M A Larkin; G Blackshields; N P Brown; R Chenna; P A McGettigan; H McWilliam; F Valentin; I M Wallace; A Wilm; R Lopez; J D Thompson; T J Gibson; D G Higgins
Journal:  Bioinformatics       Date:  2007-09-10       Impact factor: 6.937

7.  A novel conotoxin inhibitor of Kv1.6 channel and nAChR subtypes defines a new superfamily of conotoxins.

Authors:  Julita S Imperial; Paramjit S Bansal; Paul F Alewood; Norelle L Daly; David J Craik; Annett Sporning; Heinrich Terlau; Estuardo López-Vera; Pradip K Bandyopadhyay; Baldomero M Olivera
Journal:  Biochemistry       Date:  2006-07-11       Impact factor: 3.162

8.  Diversity and evolution of conotoxins based on gene expression profiling of Conus litteratus.

Authors:  Canhui Pi; Junliang Liu; Can Peng; Yun Liu; Xiuhua Jiang; Yu Zhao; Shaojun Tang; Lei Wang; Meiling Dong; Shangwu Chen; Anlong Xu
Journal:  Genomics       Date:  2006-08-14       Impact factor: 5.736

9.  I(1)-superfamily conotoxins and prediction of single D-amino acid occurrence.

Authors:  Olga Buczek; Elsie C Jimenez; Doju Yoshikami; Julita S Imperial; Maren Watkins; Alex Morrison; Baldomero M Olivera
Journal:  Toxicon       Date:  2007-09-29       Impact factor: 3.033

10.  Evolution of ecological specialization and venom of a predatory marine gastropod.

Authors:  E A Remigio; T F Duda
Journal:  Mol Ecol       Date:  2008-01-21       Impact factor: 6.185

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  34 in total

1.  Transcriptomic messiness in the venom duct of Conus miles contributes to conotoxin diversity.

Authors:  Ai-hua Jin; Sébastien Dutertre; Quentin Kaas; Vincent Lavergne; Petra Kubala; Richard J Lewis; Paul F Alewood
Journal:  Mol Cell Proteomics       Date:  2013-09-16       Impact factor: 5.911

2.  Optimized deep-targeted proteotranscriptomic profiling reveals unexplored Conus toxin diversity and novel cysteine frameworks.

Authors:  Vincent Lavergne; Ivon Harliwong; Alun Jones; David Miller; Ryan J Taft; Paul F Alewood
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-06       Impact factor: 11.205

3.  Insertions and Deletions Play an Important Role in the Diversity of Conotoxins.

Authors:  Manyi Yang; Maojun Zhou
Journal:  Protein J       Date:  2020-04       Impact factor: 2.371

4.  High conopeptide diversity in Conus tribblei revealed through analysis of venom duct transcriptome using two high-throughput sequencing platforms.

Authors:  Neda Barghi; Gisela P Concepcion; Baldomero M Olivera; Arturo O Lluisma
Journal:  Mar Biotechnol (NY)       Date:  2014-08-13       Impact factor: 3.619

5.  Structural and Functional Diversity of Peptide Toxins from Tarantula Haplopelma hainanum (Ornithoctonus hainana) Venom Revealed by Transcriptomic, Peptidomic, and Patch Clamp Approaches.

Authors:  Yi-Ya Zhang; Yong Huang; Quan-Ze He; Ji Luo; Li Zhu; Shan-Shan Lu; Jin-Yan Liu; Peng-Fei Huang; Xiong-Zhi Zeng; Song-Ping Liang
Journal:  J Biol Chem       Date:  2015-03-13       Impact factor: 5.157

6.  Deep venomics reveals the mechanism for expanded peptide diversity in cone snail venom.

Authors:  Sébastien Dutertre; Ai-hua Jin; Quentin Kaas; Alun Jones; Paul F Alewood; Richard J Lewis
Journal:  Mol Cell Proteomics       Date:  2012-11-14       Impact factor: 5.911

7.  Molecular phylogeny and evolution of the cone snails (Gastropoda, Conoidea).

Authors:  N Puillandre; P Bouchet; T F Duda; S Kauferstein; A J Kohn; B M Olivera; M Watkins; C Meyer
Journal:  Mol Phylogenet Evol       Date:  2014-05-28       Impact factor: 4.286

8.  Adaptive radiation of venomous marine snail lineages and the accelerated evolution of venom peptide genes.

Authors:  Baldomero M Olivera; Maren Watkins; Pradip Bandyopadhyay; Julita S Imperial; Edgar P Heimer de la Cotera; Manuel B Aguilar; Estuardo López Vera; Gisela P Concepcion; Arturo Lluisma
Journal:  Ann N Y Acad Sci       Date:  2012-09       Impact factor: 5.691

Review 9.  Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature.

Authors:  Paul G Arnison; Mervyn J Bibb; Gabriele Bierbaum; Albert A Bowers; Tim S Bugni; Grzegorz Bulaj; Julio A Camarero; Dominic J Campopiano; Gregory L Challis; Jon Clardy; Paul D Cotter; David J Craik; Michael Dawson; Elke Dittmann; Stefano Donadio; Pieter C Dorrestein; Karl-Dieter Entian; Michael A Fischbach; John S Garavelli; Ulf Göransson; Christian W Gruber; Daniel H Haft; Thomas K Hemscheidt; Christian Hertweck; Colin Hill; Alexander R Horswill; Marcel Jaspars; Wendy L Kelly; Judith P Klinman; Oscar P Kuipers; A James Link; Wen Liu; Mohamed A Marahiel; Douglas A Mitchell; Gert N Moll; Bradley S Moore; Rolf Müller; Satish K Nair; Ingolf F Nes; Gillian E Norris; Baldomero M Olivera; Hiroyasu Onaka; Mark L Patchett; Joern Piel; Martin J T Reaney; Sylvie Rebuffat; R Paul Ross; Hans-Georg Sahl; Eric W Schmidt; Michael E Selsted; Konstantin Severinov; Ben Shen; Kaarina Sivonen; Leif Smith; Torsten Stein; Roderich D Süssmuth; John R Tagg; Gong-Li Tang; Andrew W Truman; John C Vederas; Christopher T Walsh; Jonathan D Walton; Silke C Wenzel; Joanne M Willey; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2013-01       Impact factor: 13.423

Review 10.  Discovery, synthesis, and structure-activity relationships of conotoxins.

Authors:  Kalyana B Akondi; Markus Muttenthaler; Sébastien Dutertre; Quentin Kaas; David J Craik; Richard J Lewis; Paul F Alewood
Journal:  Chem Rev       Date:  2014-04-10       Impact factor: 60.622

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