Literature DB >> 25117477

High conopeptide diversity in Conus tribblei revealed through analysis of venom duct transcriptome using two high-throughput sequencing platforms.

Neda Barghi1, Gisela P Concepcion, Baldomero M Olivera, Arturo O Lluisma.   

Abstract

The venom of each species of Conus contains different kinds of pharmacologically active peptides which are mostly unique to that species. Collectively, the ~500-700 species of Conus produce a large number of these peptides, perhaps exceeding 140,000 different types in total. To date, however, only a small fraction of this diversity has been characterized via transcriptome sequencing. In addition, the sampling of this chemical diversity has not been uniform across the different lineages in the genus. In this study, we used high-throughput transcriptome sequencing approach to further investigate the diversity of Conus venom peptides. We chose a species, Conus tribblei, as a representative of a poorly studied clade of Conus. Using the Roche 454 and Illumina platforms, we discovered 136 unique and novel putative conopeptides belonging to 30 known gene superfamilies and 6 new conopeptide groups, the greatest diversity so far observed from a transcriptome. Most of the identified peptides exhibited divergence from the known conopeptides, and some contained cysteine frameworks observed for the first time in cone snails. In addition, several enzymes involved in posttranslational modification of conopeptides and also some proteins involved in efficient delivery of the conopeptides to prey were identified as well. Interestingly, a number of conopeptides highly similar to the conopeptides identified in a phylogenetically distant species, the generalist feeder Conus californicus, were observed. The high diversity of conopeptides and the presence of conopeptides similar to those in C. californicus suggest that C. tribblei may have a broad range of prey preferences.

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Year:  2014        PMID: 25117477      PMCID: PMC4501261          DOI: 10.1007/s10126-014-9595-7

Source DB:  PubMed          Journal:  Mar Biotechnol (NY)        ISSN: 1436-2228            Impact factor:   3.619


  60 in total

1.  Mechanisms for evolving hypervariability: the case of conopeptides.

Authors:  S G Conticello; Y Gilad; N Avidan; E Ben-Asher; Z Levy; M Fainzilber
Journal:  Mol Biol Evol       Date:  2001-02       Impact factor: 16.240

2.  De novo assembly and analysis of RNA-seq data.

Authors:  Gordon Robertson; Jacqueline Schein; Readman Chiu; Richard Corbett; Matthew Field; Shaun D Jackman; Karen Mungall; Sam Lee; Hisanaga Mark Okada; Jenny Q Qian; Malachi Griffith; Anthony Raymond; Nina Thiessen; Timothee Cezard; Yaron S Butterfield; Richard Newsome; Simon K Chan; Rong She; Richard Varhol; Baljit Kamoh; Anna-Liisa Prabhu; Angela Tam; YongJun Zhao; Richard A Moore; Martin Hirst; Marco A Marra; Steven J M Jones; Pamela A Hoodless; Inanc Birol
Journal:  Nat Methods       Date:  2010-10-10       Impact factor: 28.547

3.  Structural and functional evolution of the vasopressin/oxytocin superfamily: vasopressin-related conopressin is the only member present in Lymnaea, and is involved in the control of sexual behavior.

Authors:  R E Van Kesteren; A B Smit; R P De Lange; K S Kits; F A Van Golen; R C Van Der Schors; N D De With; J F Burke; W P Geraerts
Journal:  J Neurosci       Date:  1995-09       Impact factor: 6.167

4.  Purification and characterization of a novel excitatory peptide from Conus distans venom that defines a novel gene superfamily of conotoxins.

Authors:  Ping Chen; James E Garrett; Maren Watkins; Baldomero M Olivera
Journal:  Toxicon       Date:  2008-06-05       Impact factor: 3.033

5.  Purification and sequence of a presynaptic peptide toxin from Conus geographus venom.

Authors:  B M Olivera; J M McIntosh; L J Cruz; F A Luque; W R Gray
Journal:  Biochemistry       Date:  1984-10-23       Impact factor: 3.162

6.  Gene expression and feeding ecology: evolution of piscivory in the venomous gastropod genus Conus.

Authors:  Thomas F Duda; Stephen R Palumbi
Journal:  Proc Biol Sci       Date:  2004-06-07       Impact factor: 5.349

7.  Evolution of ecological specialization and venom of a predatory marine gastropod.

Authors:  E A Remigio; T F Duda
Journal:  Mol Ecol       Date:  2008-01-21       Impact factor: 6.185

8.  DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.

Authors:  O Folmer; M Black; W Hoeh; R Lutz; R Vrijenhoek
Journal:  Mol Mar Biol Biotechnol       Date:  1994-10

9.  Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels.

Authors:  Marcel H Schulz; Daniel R Zerbino; Martin Vingron; Ewan Birney
Journal:  Bioinformatics       Date:  2012-02-24       Impact factor: 6.937

10.  SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.

Authors:  Ruibang Luo; Binghang Liu; Yinlong Xie; Zhenyu Li; Weihua Huang; Jianying Yuan; Guangzhu He; Yanxiang Chen; Qi Pan; Yunjie Liu; Jingbo Tang; Gengxiong Wu; Hao Zhang; Yujian Shi; Yong Liu; Chang Yu; Bo Wang; Yao Lu; Changlei Han; David W Cheung; Siu-Ming Yiu; Shaoliang Peng; Zhu Xiaoqian; Guangming Liu; Xiangke Liao; Yingrui Li; Huanming Yang; Jian Wang; Tak-Wah Lam; Jun Wang
Journal:  Gigascience       Date:  2012-12-27       Impact factor: 6.524

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  28 in total

1.  Conodipine-P1-3, the First Phospholipases A2 Characterized from Injected Cone Snail Venom.

Authors:  Carolina Möller; W Clay Davis; Evan Clark; Anthony DeCaprio; Frank Marí
Journal:  Mol Cell Proteomics       Date:  2019-02-14       Impact factor: 5.911

2.  Insertions and Deletions Play an Important Role in the Diversity of Conotoxins.

Authors:  Manyi Yang; Maojun Zhou
Journal:  Protein J       Date:  2020-04       Impact factor: 2.371

3.  Structural features of conopeptide genes inferred from partial sequences of the Conus tribblei genome.

Authors:  Neda Barghi; Gisela P Concepcion; Baldomero M Olivera; Arturo O Lluisma
Journal:  Mol Genet Genomics       Date:  2015-09-30       Impact factor: 3.291

Review 4.  Biomaterials and Bioactive Natural Products from Marine Invertebrates: From Basic Research to Innovative Applications.

Authors:  Giovanna Romano; Mariana Almeida; Ana Varela Coelho; Adele Cutignano; Luis G Gonçalves; Espen Hansen; Denis Khnykin; Tali Mass; Andreja Ramšak; Miguel S Rocha; Tiago H Silva; Michela Sugni; Loriano Ballarin; Anne-Marie Genevière
Journal:  Mar Drugs       Date:  2022-03-22       Impact factor: 6.085

Review 5.  From Mollusks to Medicine: A Venomics Approach for the Discovery and Characterization of Therapeutics from Terebridae Peptide Toxins.

Authors:  Aida Verdes; Prachi Anand; Juliette Gorson; Stephen Jannetti; Patrick Kelly; Abba Leffler; Danny Simpson; Girish Ramrattan; Mandë Holford
Journal:  Toxins (Basel)       Date:  2016-04-19       Impact factor: 4.546

6.  High-throughput identification of novel conotoxins from the Chinese tubular cone snail (Conus betulinus) by multi-transcriptome sequencing.

Authors:  Chao Peng; Ge Yao; Bing-Miao Gao; Chong-Xu Fan; Chao Bian; Jintu Wang; Ying Cao; Bo Wen; Yabing Zhu; Zhiqiang Ruan; Xiaofei Zhao; Xinxin You; Jie Bai; Jia Li; Zhilong Lin; Shijie Zou; Xinhui Zhang; Ying Qiu; Jieming Chen; Steven L Coon; Jiaan Yang; Ji-Sheng Chen; Qiong Shi
Journal:  Gigascience       Date:  2016-04-14       Impact factor: 6.524

7.  Comparison of the Venom Peptides and Their Expression in Closely Related Conus Species: Insights into Adaptive Post-speciation Evolution of Conus Exogenomes.

Authors:  Neda Barghi; Gisela P Concepcion; Baldomero M Olivera; Arturo O Lluisma
Journal:  Genome Biol Evol       Date:  2015-06-04       Impact factor: 3.416

8.  TRUFA: A User-Friendly Web Server for de novo RNA-seq Analysis Using Cluster Computing.

Authors:  Etienne Kornobis; Luis Cabellos; Fernando Aguilar; Cristina Frías-López; Julio Rozas; Jesús Marco; Rafael Zardoya
Journal:  Evol Bioinform Online       Date:  2015-05-24       Impact factor: 1.625

9.  Dietary breadth is positively correlated with venom complexity in cone snails.

Authors:  Mark A Phuong; Gusti N Mahardika; Michael E Alfaro
Journal:  BMC Genomics       Date:  2016-05-26       Impact factor: 3.969

Review 10.  Cone Snails: A Big Store of Conotoxins for Novel Drug Discovery.

Authors:  Bingmiao Gao; Chao Peng; Jiaan Yang; Yunhai Yi; Junqing Zhang; Qiong Shi
Journal:  Toxins (Basel)       Date:  2017-12-07       Impact factor: 4.546

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