Literature DB >> 22307593

Constant-speed vibrational signaling along polyethyleneglycol chain up to 60-Å distance.

Zhiwei Lin1, Igor V Rubtsov.   

Abstract

A series of azido-PEG-succinimide ester oligomers with a number of repeating PEG units of 0, 4, 8, and 12 (azPEG0, 4, 8, and 12) was investigated using a relaxation-assisted two-dimensional infrared (RA 2DIR) spectroscopy method. The RA 2DIR method relies on the energy transport in molecules and is capable of correlating the frequencies of vibrational modes separated by large through-bond distances. Excitation of the azido group in the compounds at ca. 2,100 cm(-1) generates an excess energy which propagates in the molecule as well as dissipates into the solvent. We discovered that a part of the excess energy propagates ballistically via the covalent backbone of the molecules with a constant speed of ca. 550 m/s. The transport is described as a propagation of a vibrational wavepacket having a mean-free-path length of 10-15 Å. The discovery has the potential for developing new efficient signal transduction strategies for molecular electronics and biochemistry. It also permits extending the distances accessible in RA 2DIR structural measurements up to ca. 60 Å.

Entities:  

Year:  2012        PMID: 22307593      PMCID: PMC3277136          DOI: 10.1073/pnas.1116289109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  Sulfoxide stretching mode as a structural reporter via dual-frequency two-dimensional infrared spectroscopy.

Authors:  Christopher S Keating; Beth A McClure; Jeffrey J Rack; Igor V Rubtsov
Journal:  J Chem Phys       Date:  2010-10-14       Impact factor: 3.488

2.  A method for determining small anharmonicity values from 2DIR spectra using thermally induced shifts of frequencies of high-frequency modes.

Authors:  Zhiwei Lin; Patrick Keiffer; Igor V Rubtsov
Journal:  J Phys Chem B       Date:  2010-12-28       Impact factor: 2.991

3.  Dual-frequency 2D IR on interaction of weak and strong IR modes.

Authors:  Dmitry V Kurochkin; Sri Ram G Naraharisetty; Igor V Rubtsov
Journal:  J Phys Chem A       Date:  2005-12-08       Impact factor: 2.781

4.  Energy transport in peptide helices.

Authors:  Virgiliu Botan; Ellen H G Backus; Rolf Pfister; Alessandro Moretto; Marco Crisma; Claudio Toniolo; Phuong H Nguyen; Gerhard Stock; Peter Hamm
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-23       Impact factor: 11.205

5.  Bond connectivity measured via relaxation-assisted two-dimensional infrared spectroscopy.

Authors:  Sri Ram G Naraharisetty; Valeriy M Kasyanenko; Igor V Rubtsov
Journal:  J Chem Phys       Date:  2008-03-14       Impact factor: 3.488

6.  Ultrafast flash thermal conductance of molecular chains.

Authors:  Zhaohui Wang; Jeffrey A Carter; Alexei Lagutchev; Yee Kan Koh; Nak-Hyun Seong; David G Cahill; Dana D Dlott
Journal:  Science       Date:  2007-08-10       Impact factor: 47.728

7.  Relaxation-assisted two-dimensional infrared (RA 2DIR) method: accessing distances over 10 A and measuring bond connectivity patterns.

Authors:  Igor V Rubtsov
Journal:  Acc Chem Res       Date:  2009-09-15       Impact factor: 22.384

8.  Molecular dynamics simulation of heat conduction through a molecular chain.

Authors:  Christian Schröder; Vyacheslav Vikhrenko; Dirk Schwarzer
Journal:  J Phys Chem A       Date:  2009-12-24       Impact factor: 2.781

9.  Watching Hydrogen Bonds Break: A Transient Absorption Study of Water.

Authors:  Tobias Steinel; John B Asbury; Junrong Zheng; M D Fayer
Journal:  J Phys Chem A       Date:  2004-12-16       Impact factor: 2.781

10.  A relaxation-assisted 2D IR spectroscopy method.

Authors:  Dmitry V Kurochkin; Sri Ram G Naraharisetty; Igor V Rubtsov
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-08       Impact factor: 11.205

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  7 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

Review 2.  Applications of two-dimensional infrared spectroscopy.

Authors:  Amanda L Le Sueur; Rachel E Horness; Megan C Thielges
Journal:  Analyst       Date:  2015-07-07       Impact factor: 4.616

3.  Kinetics of exchange between zero-, one-, and two-hydrogen-bonded states of methyl and ethyl acetate in methanol.

Authors:  Lev Chuntonov; Ileana M Pazos; Jianqiang Ma; Feng Gai
Journal:  J Phys Chem B       Date:  2015-03-13       Impact factor: 2.991

4.  Spatially Resolved Two-Dimensional Infrared Spectroscopy via Wide-Field Microscopy.

Authors:  Joshua S Ostrander; Arnaldo L Serrano; Ayanjeet Ghosh; Martin T Zanni
Journal:  ACS Photonics       Date:  2016-06-10       Impact factor: 7.529

5.  Vibrational dynamics of a non-degenerate ultrafast rotor: the (C12,C13)-oxalate ion.

Authors:  Daniel G Kuroda; Mohannad Abdo; Lev Chuntonov; Amos B Smith; Robin M Hochstrasser
Journal:  J Chem Phys       Date:  2013-10-28       Impact factor: 3.488

Review 6.  Molecules and the Eigenstate Thermalization Hypothesis.

Authors:  David M Leitner
Journal:  Entropy (Basel)       Date:  2018-09-05       Impact factor: 2.524

7.  Tracking Energy Transfer across a Platinum Center.

Authors:  Tammy X Leong; Brenna K Collins; Sourajit Dey Baksi; Robert T Mackin; Artem Sribnyi; Alexander L Burin; John A Gladysz; Igor V Rubtsov
Journal:  J Phys Chem A       Date:  2022-07-26       Impact factor: 2.944

  7 in total

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