Literature DB >> 16331922

Dual-frequency 2D IR on interaction of weak and strong IR modes.

Dmitry V Kurochkin1, Sri Ram G Naraharisetty, Igor V Rubtsov.   

Abstract

Dual-frequency 2D IR heterodyne photon-echo spectroscopy of C[triple bond]N and C=O stretching vibrational modes in 2-cyanocoumarin is reported. We have shown that the interaction among these modes provides convenient and useful structural constraints for molecules. Implementation of two pulse sequences, 4, 4, and 6 microm and 6, 6, and 4 microm, allowed the clear determination of contributions caused by vibrational relaxation. Positive correlation between C[triple bond]N and C=O frequency distributions was observed in 2-cyanocoumarin. Because C[triple bond]N modes are highly localized and have frequencies in a spectral region with minimal water absorption, the C[triple bond]N/C=O interactions have a strong potential for use as structural reporters in proteins. In addition to CN/CO peaks, the cross-peaks responsible for the C[triple bond]N/C=C interaction are also observed in the 2D IR spectra, where C=C is a coumarin ring stretching mode. We have demonstrated that 2D IR spectroscopy can utilize interactions of strong IR modes with weak local modes as structural reporters.

Entities:  

Year:  2005        PMID: 16331922     DOI: 10.1021/jp055811+

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  11 in total

1.  Constant-speed vibrational signaling along polyethyleneglycol chain up to 60-Å distance.

Authors:  Zhiwei Lin; Igor V Rubtsov
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

2.  Site-Specific Spectroscopic Reporters of the Local Electric Field, Hydration, Structure, and Dynamics of Biomolecules.

Authors:  Matthias M Waegele; Robert M Culik; Feng Gai
Journal:  J Phys Chem Lett       Date:  2011-09-23       Impact factor: 6.475

3.  Two-dimensional infrared spectra reveal relaxation of the nonnucleoside inhibitor TMC278 complexed with HIV-1 reverse transcriptase.

Authors:  Chong Fang; Joseph D Bauman; Kalyan Das; Amanda Remorino; Eddy Arnold; Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-26       Impact factor: 11.205

4.  Two-dimensional spectroscopy at infrared and optical frequencies.

Authors:  Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-30       Impact factor: 11.205

Review 5.  Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Authors:  Ayanjeet Ghosh; Joshua S Ostrander; Martin T Zanni
Journal:  Chem Rev       Date:  2017-01-06       Impact factor: 60.622

6.  Water-induced relaxation of a degenerate vibration of guanidinium using 2D IR echo spectroscopy.

Authors:  Dmitriy Yu Vorobyev; Chun-Hung Kuo; Daniel G Kuroda; J Nathan Scott; Jane M Vanderkooi; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2010-03-04       Impact factor: 2.991

7.  5-Cyanotryptophan as an Infrared Probe of Local Hydration Status of Proteins.

Authors:  Matthias M Waegele; Matthew J Tucker; Feng Gai
Journal:  Chem Phys Lett       Date:  2009-09-01       Impact factor: 2.328

8.  Two-dimensional infrared spectroscopy as a probe of the solvent electrostatic field for a twelve residue peptide.

Authors:  Jianping Wang; Wei Zhuang; Shaul Mukamel; Robin Hochstrasser
Journal:  J Phys Chem B       Date:  2007-12-14       Impact factor: 2.991

9.  A relaxation-assisted 2D IR spectroscopy method.

Authors:  Dmitry V Kurochkin; Sri Ram G Naraharisetty; Igor V Rubtsov
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-08       Impact factor: 11.205

10.  Identification of arginine residues in peptides by 2D-IR echo spectroscopy.

Authors:  Ayanjeet Ghosh; Matthew J Tucker; Robin M Hochstrasser
Journal:  J Phys Chem A       Date:  2011-05-03       Impact factor: 2.781

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