Literature DB >> 22301132

Translational genomics: the challenge of developing cancer biomarkers.

James D Brooks1.   

Abstract

Early detection and definitive treatment of cancer have been shown to decrease death and suffering in epidemiologic and intervention studies. Application of genomic approaches to many malignancies has produced thousands of candidate biomarkers for detection and prognostication, yet very few have become established in clinical practice. Fundamental issues related to tumor heterogeneity, cancer progression, natural history, and biomarker performance have provided challenges to biomarker development. Technical issues in biomarker assay detection limits, specificity, clinical deployment, and regulation have also slowed progress. The recent emergence of biomarkers and molecular imaging strategies for treatment selection and monitoring demonstrates the promise of cancer biomarkers. Organized efforts by interdisciplinary teams will spur progress in cancer diagnostics.

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Year:  2012        PMID: 22301132      PMCID: PMC3266026          DOI: 10.1101/gr.124347.111

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  51 in total

1.  Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.

Authors:  Scott A Tomlins; Daniel R Rhodes; Sven Perner; Saravana M Dhanasekaran; Rohit Mehra; Xiao-Wei Sun; Sooryanarayana Varambally; Xuhong Cao; Joelle Tchinda; Rainer Kuefer; Charles Lee; James E Montie; Rajal B Shah; Kenneth J Pienta; Mark A Rubin; Arul M Chinnaiyan
Journal:  Science       Date:  2005-10-28       Impact factor: 47.728

Review 2.  Biomarkers in cancer staging, prognosis and treatment selection.

Authors:  Joseph A Ludwig; John N Weinstein
Journal:  Nat Rev Cancer       Date:  2005-11       Impact factor: 60.716

3.  How much can we rely on the level of prostate-specific antigen as an end point for evaluation of clinical trials? A word of caution!

Authors:  M A Eisenberger; W G Nelson
Journal:  J Natl Cancer Inst       Date:  1996-06-19       Impact factor: 13.506

4.  Quantitative methylation-specific polymerase chain reaction gene patterns in urine sediment distinguish prostate cancer patients from control subjects.

Authors:  Mohammad Obaidul Hoque; Ozlem Topaloglu; Shahnaz Begum; Rui Henrique; Eli Rosenbaum; Wim Van Criekinge; William H Westra; David Sidransky
Journal:  J Clin Oncol       Date:  2005-09-20       Impact factor: 44.544

5.  Detection in fecal DNA of colon cancer-specific methylation of the nonexpressed vimentin gene.

Authors:  Wei-Dong Chen; Z James Han; Joel Skoletsky; Jeff Olson; Jerome Sah; Lois Myeroff; Petra Platzer; Shilong Lu; Dawn Dawson; Joseph Willis; Theresa P Pretlow; James Lutterbaugh; Lakshmi Kasturi; James K V Willson; J Sunil Rao; Anthony Shuber; Sanford D Markowitz
Journal:  J Natl Cancer Inst       Date:  2005-08-03       Impact factor: 13.506

6.  EGFR mutations in lung cancer: correlation with clinical response to gefitinib therapy.

Authors:  J Guillermo Paez; Pasi A Jänne; Jeffrey C Lee; Sean Tracy; Heidi Greulich; Stacey Gabriel; Paula Herman; Frederic J Kaye; Neal Lindeman; Titus J Boggon; Katsuhiko Naoki; Hidefumi Sasaki; Yoshitaka Fujii; Michael J Eck; William R Sellers; Bruce E Johnson; Matthew Meyerson
Journal:  Science       Date:  2004-04-29       Impact factor: 47.728

7.  Quantitative detection of promoter hypermethylation of multiple genes in the tumor, urine, and serum DNA of patients with renal cancer.

Authors:  Mohammad Obaidul Hoque; Shahnaz Begum; Ozlem Topaloglu; Carmen Jeronimo; Elizabeth Mambo; William H Westra; J A Califano; David Sidransky
Journal:  Cancer Res       Date:  2004-08-01       Impact factor: 12.701

8.  Gefitinib in combination with paclitaxel and carboplatin in advanced non-small-cell lung cancer: a phase III trial--INTACT 2.

Authors:  Roy S Herbst; Giuseppe Giaccone; Joan H Schiller; Ronald B Natale; Vincent Miller; Christian Manegold; Giorgio Scagliotti; Rafael Rosell; Ira Oliff; James A Reeves; Michael K Wolf; Annetta D Krebs; Steven D Averbuch; Judith S Ochs; John Grous; Abderrahim Fandi; David H Johnson
Journal:  J Clin Oncol       Date:  2004-03-01       Impact factor: 44.544

9.  Prevalence of prostate cancer among men with a prostate-specific antigen level < or =4.0 ng per milliliter.

Authors:  Ian M Thompson; Donna K Pauler; Phyllis J Goodman; Catherine M Tangen; M Scott Lucia; Howard L Parnes; Lori M Minasian; Leslie G Ford; Scott M Lippman; E David Crawford; John J Crowley; Charles A Coltman
Journal:  N Engl J Med       Date:  2004-05-27       Impact factor: 91.245

10.  Integrated genomic analyses of ovarian carcinoma.

Authors: 
Journal:  Nature       Date:  2011-06-29       Impact factor: 49.962

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  39 in total

1.  An emerging toolkit for targeted cancer therapies.

Authors:  Gordon B Mills
Journal:  Genome Res       Date:  2012-02       Impact factor: 9.043

2.  Increased expression of GCNT1 is associated with altered O-glycosylation of PSA, PAP, and MUC1 in human prostate cancers.

Authors:  Zuxiong Chen; Zulfiqar G Gulzar; Catherine A St Hill; Bruce Walcheck; James D Brooks
Journal:  Prostate       Date:  2014-05-22       Impact factor: 4.104

3.  An Automated Microfluidic Assay for Photonic Crystal Enhanced Detection and Analysis of an Antiviral Antibody Cancer Biomarker in Serum.

Authors:  Caitlin M Race; Lydia E Kwon; Myles T Foreman; Qinglan Huang; Hakan Inan; Sailaja Kesiraju; Phuong Le; Sung Jun Lim; Andrew M Smith; Richard C Zangar; Utkan Demirci; Karen S Anderson; Brian T Cunningham
Journal:  IEEE Sens J       Date:  2017-11-24       Impact factor: 3.301

4.  Point-of-care diagnostics for noncommunicable diseases using synthetic urinary biomarkers and paper microfluidics.

Authors:  Andrew D Warren; Gabriel A Kwong; David K Wood; Kevin Y Lin; Sangeeta N Bhatia
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-24       Impact factor: 11.205

5.  Treatment of multifocal breast cancer by systemic delivery of dual-targeted adeno-associated viral vectors.

Authors:  M Trepel; J Körbelin; E Spies; M B Heckmann; A Hunger; B Fehse; H A Katus; J A Kleinschmidt; O J Müller; S Michelfelder
Journal:  Gene Ther       Date:  2015-06-02       Impact factor: 5.250

Review 6.  The use of genomics, proteomics, and metabolomics in identifying biomarkers of male infertility.

Authors:  Jason R Kovac; Alexander W Pastuszak; Dolores J Lamb
Journal:  Fertil Steril       Date:  2013-02-15       Impact factor: 7.329

7.  Loss of Expression of AZGP1 Is Associated With Worse Clinical Outcomes in a Multi-Institutional Radical Prostatectomy Cohort.

Authors:  James D Brooks; Wei Wei; Jonathan R Pollack; Robert B West; Jun Ho Shin; John B Sunwoo; Sarah J Hawley; Heidi Auman; Lisa F Newcomb; Jeff Simko; Antonio Hurtado-Coll; Dean A Troyer; Peter R Carroll; Martin E Gleave; Daniel W Lin; Peter S Nelson; Ian M Thompson; Lawrence D True; Jesse K McKenney; Ziding Feng; Ladan Fazli
Journal:  Prostate       Date:  2016-06-21       Impact factor: 4.104

Review 8.  Exosomes in bodily fluids are a highly stable resource of disease biomarkers.

Authors:  Stephanie Boukouris; Suresh Mathivanan
Journal:  Proteomics Clin Appl       Date:  2015-03-19       Impact factor: 3.494

9.  Integrated Proteomic and Genomic Analysis of Gastric Cancer Patient Tissues.

Authors:  Julia Fangfei Yan; Hoguen Kim; Seul-Ki Jeong; Hyoung-Joo Lee; Manveen K Sethi; Ling Y Lee; Ronald C Beavis; Hogune Im; Michael P Snyder; Matan Hofree; Trey Ideker; Shiaw-Lin Wu; Young-Ki Paik; Susan Fanayan; William S Hancock
Journal:  J Proteome Res       Date:  2015-10-20       Impact factor: 4.466

10.  Detection of circulating tumor DNA in early- and late-stage human malignancies.

Authors:  Chetan Bettegowda; Mark Sausen; Rebecca J Leary; Isaac Kinde; Yuxuan Wang; Nishant Agrawal; Bjarne R Bartlett; Hao Wang; Brandon Luber; Rhoda M Alani; Emmanuel S Antonarakis; Nilofer S Azad; Alberto Bardelli; Henry Brem; John L Cameron; Clarence C Lee; Leslie A Fecher; Gary L Gallia; Peter Gibbs; Dung Le; Robert L Giuntoli; Michael Goggins; Michael D Hogarty; Matthias Holdhoff; Seung-Mo Hong; Yuchen Jiao; Hartmut H Juhl; Jenny J Kim; Giulia Siravegna; Daniel A Laheru; Calogero Lauricella; Michael Lim; Evan J Lipson; Suely Kazue Nagahashi Marie; George J Netto; Kelly S Oliner; Alessandro Olivi; Louise Olsson; Gregory J Riggins; Andrea Sartore-Bianchi; Kerstin Schmidt; le-Ming Shih; Sueli Mieko Oba-Shinjo; Salvatore Siena; Dan Theodorescu; Jeanne Tie; Timothy T Harkins; Silvio Veronese; Tian-Li Wang; Jon D Weingart; Christopher L Wolfgang; Laura D Wood; Dongmei Xing; Ralph H Hruban; Jian Wu; Peter J Allen; C Max Schmidt; Michael A Choti; Victor E Velculescu; Kenneth W Kinzler; Bert Vogelstein; Nickolas Papadopoulos; Luis A Diaz
Journal:  Sci Transl Med       Date:  2014-02-19       Impact factor: 17.956

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