Literature DB >> 22298009

Expression, purification, crystallization and preliminary X-ray diffraction analysis of a ribokinase from the thermohalophile Halothermothrix orenii.

Lokesh D Kori1, Andreas Hofmann, Bharat K C Patel.   

Abstract

A ribokinase gene (rbk) from the anaerobic halothermophilic bacterium Halothermothrix orenii was cloned and overexpressed in Escherichia coli. The recombinant protein (Ho-Rbk) was purified using immobilized metal-ion affinity chromatography and crystals were obtained using the sitting-drop method. Diffraction data were collected to a resolution of 3.1 Å using synchrotron radiation. The crystals belonged to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 45.6, b = 61.1, c = 220.2, and contained two molecules per asymmetric unit. A molecular-replacement solution has been found and attempts are currently under way to build a model of the ribokinase. Efforts to improve crystal quality so that higher resolution data can be obtained are also being considered.

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Year:  2012        PMID: 22298009      PMCID: PMC3274413          DOI: 10.1107/S1744309111041091

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  22 in total

1.  Induced fit on sugar binding activates ribokinase.

Authors:  J A Sigrell; A D Cameron; S L Mowbray
Journal:  J Mol Biol       Date:  1999-07-30       Impact factor: 5.469

2.  Expression, purification and preliminary crystallographic analysis of sucrose phosphate synthase (SPS) from Halothermothrix orenii.

Authors:  Frederick Huynh; Tien-Chye Tan; Kunchithapadam Swaminathan; Bharat K C Patel
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2004-12-24

3.  Crystal structure of AmyA lacks acidic surface and provide insights into protein stability at poly-extreme condition.

Authors:  Neelamegam Sivakumar; Nan Li; Julian W Tang; Bharat K C Patel; Kunchithapadam Swaminathan
Journal:  FEBS Lett       Date:  2006-04-19       Impact factor: 4.124

4.  The structure of sucrose phosphate synthase from Halothermothrix orenii reveals its mechanism of action and binding mode.

Authors:  Teck Khiang Chua; Janusz M Bujnicki; Tien-Chye Tan; Frederick Huynh; Bharat K Patel; J Sivaraman
Journal:  Plant Cell       Date:  2008-04-18       Impact factor: 11.277

5.  Structure of Escherichia coli ribokinase in complex with ribose and dinucleotide determined to 1.8 A resolution: insights into a new family of kinase structures.

Authors:  J A Sigrell; A D Cameron; T A Jones; S L Mowbray
Journal:  Structure       Date:  1998-02-15       Impact factor: 5.006

6.  Crystal structure of the polyextremophilic alpha-amylase AmyB from Halothermothrix orenii: details of a productive enzyme-substrate complex and an N domain with a role in binding raw starch.

Authors:  Tien-Chye Tan; Benjamin N Mijts; Kunchithapadam Swaminathan; Bharat K C Patel; Christina Divne
Journal:  J Mol Biol       Date:  2008-02-29       Impact factor: 5.469

7.  Structural analysis of monosaccharide recognition by rat liver mannose-binding protein.

Authors:  K K Ng; K Drickamer; W I Weis
Journal:  J Biol Chem       Date:  1996-01-12       Impact factor: 5.157

8.  Isolation and characterization of Halothermothrix orenii gen. nov., sp. nov., a halophilic, thermophilic, fermentative, strictly anaerobic bacterium.

Authors:  J L Cayol; B Ollivier; B K Patel; G Prensier; J Guezennec; J L Garcia
Journal:  Int J Syst Bacteriol       Date:  1994-07

9.  Protein structure prediction servers at University College London.

Authors:  Kevin Bryson; Liam J McGuffin; Russell L Marsden; Jonathan J Ward; Jaspreet S Sodhi; David T Jones
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

10.  Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii.

Authors:  Konstantinos Mavromatis; Natalia Ivanova; Iain Anderson; Athanasios Lykidis; Sean D Hooper; Hui Sun; Victor Kunin; Alla Lapidus; Philip Hugenholtz; Bharat Patel; Nikos C Kyrpides
Journal:  PLoS One       Date:  2009-01-15       Impact factor: 3.240

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