Literature DB >> 16647060

Crystal structure of AmyA lacks acidic surface and provide insights into protein stability at poly-extreme condition.

Neelamegam Sivakumar1, Nan Li, Julian W Tang, Bharat K C Patel, Kunchithapadam Swaminathan.   

Abstract

Here we report the first crystal structure of a protein, AmyA, a secretory alpha-amylase isolated from Halothermothrix orenii, which is both halophilic and thermophilic. The crystal structure was determined at 1.6 A resolution. AmyA lacks the conserved acidic surface, which is considered essential for protein stability at high salinity. Sedimentation velocity and CD experiments on AmyA reveal the formation of unique reversible poly-dispersed oligomers that show unusually high thermal stability. These studies provide valuable insight into the structural elements that contribute to the stability of AmyA at both physical and chemical extremes and their functional implications.

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Year:  2006        PMID: 16647060     DOI: 10.1016/j.febslet.2006.04.017

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  22 in total

1.  Expression, purification, crystallization and preliminary X-ray diffraction analysis of a ribokinase from the thermohalophile Halothermothrix orenii.

Authors:  Lokesh D Kori; Andreas Hofmann; Bharat K C Patel
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-01-27

2.  Distinct characteristics of single starch-binding domain SBD1 derived from tandem domains SBD1-SBD2 of halophilic Kocuria varians alpha-amylase.

Authors:  Rui Yamaguchi; Tsutomu Arakawa; Hiroko Tokunaga; Matsujiro Ishibashi; Masao Tokunaga
Journal:  Protein J       Date:  2012-03       Impact factor: 2.371

3.  Expression, purification and preliminary crystallographic analysis of the recombinant β-glucosidase (BglA) from the halothermophile Halothermothrix orenii.

Authors:  Lokesh D Kori; Andreas Hofmann; Bharat K C Patel
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-12-23

4.  Crystal structure of full-length Mycobacterium tuberculosis H37Rv glycogen branching enzyme: insights of N-terminal beta-sandwich in substrate specificity and enzymatic activity.

Authors:  Kuntal Pal; Shiva Kumar; Shikha Sharma; Saurabh Kumar Garg; Mohammad Suhail Alam; H Eric Xu; Pushpa Agrawal; Kunchithapadam Swaminathan
Journal:  J Biol Chem       Date:  2010-05-05       Impact factor: 5.157

Review 5.  α-Amylase: an enzyme specificity found in various families of glycoside hydrolases.

Authors:  Štefan Janeček; Birte Svensson; E Ann MacGregor
Journal:  Cell Mol Life Sci       Date:  2013-06-27       Impact factor: 9.261

6.  New insight in the structural features of haloadaptation in α-amylases from halophilic Archaea following homology modeling strategy: folded and stable conformation maintained through low hydrophobicity and highly negative charged surface.

Authors:  Mohamed Amine Zorgani; Kevin Patron; Mickaël Desvaux
Journal:  J Comput Aided Mol Des       Date:  2014-05-28       Impact factor: 3.686

7.  Novel Maltogenic Amylase CoMA from Corallococcus sp. Strain EGB Catalyzes the Conversion of Maltooligosaccharides and Soluble Starch to Maltose.

Authors:  Jie Zhou; Zhoukun Li; Han Zhang; Jiale Wu; Xianfeng Ye; Weiliang Dong; Min Jiang; Yan Huang; Zhongli Cui
Journal:  Appl Environ Microbiol       Date:  2018-07-02       Impact factor: 4.792

Review 8.  The Sus operon: a model system for starch uptake by the human gut Bacteroidetes.

Authors:  Matthew H Foley; Darrell W Cockburn; Nicole M Koropatkin
Journal:  Cell Mol Life Sci       Date:  2016-05-02       Impact factor: 9.261

9.  Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii.

Authors:  Konstantinos Mavromatis; Natalia Ivanova; Iain Anderson; Athanasios Lykidis; Sean D Hooper; Hui Sun; Victor Kunin; Alla Lapidus; Philip Hugenholtz; Bharat Patel; Nikos C Kyrpides
Journal:  PLoS One       Date:  2009-01-15       Impact factor: 3.240

10.  The crystal structure of Haloferax volcanii proliferating cell nuclear antigen reveals unique surface charge characteristics due to halophilic adaptation.

Authors:  Jody A Winter; Panayiotis Christofi; Shaun Morroll; Karen A Bunting
Journal:  BMC Struct Biol       Date:  2009-08-22
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