Literature DB >> 22294819

A closed literature-based discovery technique finds a mechanistic link between hypogonadism and diminished sleep quality in aging men.

Christopher M Miller1, Thomas C Rindflesch, Marcelo Fiszman, Dimitar Hristovski, Dongwook Shin, Graciela Rosemblat, Han Zhang, Kingman P Strohl.   

Abstract

STUDY
OBJECTIVES: Sleep quality commonly diminishes with age, and, further, aging men often exhibit a wider range of sleep pathologies than women. We used a freely available, web-based discovery technique (Semantic MEDLINE) supported by semantic relationships to automatically extract information from MEDLINE titles and abstracts.
DESIGN: We assumed that testosterone is associated with sleep (the A-C relationship in the paradigm) and looked for a mechanism to explain this association (B explanatory link) as a potential or partial mechanism underpinning the etiology of eroded sleep quality in aging men. MEASUREMENTS AND
RESULTS: Review of full-text papers in critical nodes discovered in this manner resulted in the proposal that testosterone enhances sleep by inhibiting cortisol. Using this discovery method, we posit, and could confirm as a novel hypothesis, cortisol as part of a mechanistic link elucidating the observed correlation between decreased testosterone in aging men and diminished sleep quality.
CONCLUSIONS: This approach is publically available and useful not only in this manner but also to generate from the literature alternative explanatory models for observed experimental results.

Entities:  

Keywords:  Information technology; cortisol; literature-based discovery; men; sleep; testosterone

Mesh:

Substances:

Year:  2012        PMID: 22294819      PMCID: PMC3250368          DOI: 10.5665/sleep.1640

Source DB:  PubMed          Journal:  Sleep        ISSN: 0161-8105            Impact factor:   5.849


  58 in total

1.  The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text.

Authors:  Thomas C Rindflesch; Marcelo Fiszman
Journal:  J Biomed Inform       Date:  2003-12       Impact factor: 6.317

2.  Effects of leuprolide-induced hypogonadism and testosterone replacement on sleep, melatonin, and prolactin secretion in men.

Authors:  E Leibenluft; P J Schmidt; E H Turner; M A Danaceau; S B Ashman; T A Wehr; D R Rubinow
Journal:  J Clin Endocrinol Metab       Date:  1997-10       Impact factor: 5.958

Review 3.  The cortisol awakening response: more than a measure of HPA axis function.

Authors:  Angela Clow; Frank Hucklebridge; Tobias Stalder; Phil Evans; Lisa Thorn
Journal:  Neurosci Biobehav Rev       Date:  2009-12-22       Impact factor: 8.989

4.  Twenty-four hour pattern of the episodic secretion of cortisol in normal subjects.

Authors:  E D Weitzman; D Fukushima; C Nogeire; H Roffwarg; T F Gallagher; L Hellman
Journal:  J Clin Endocrinol Metab       Date:  1971-07       Impact factor: 5.958

5.  Middle-aged men show higher sensitivity of sleep to the arousing effects of corticotropin-releasing hormone than young men: clinical implications.

Authors:  A N Vgontzas; E O Bixler; A M Wittman; K Zachman; H M Lin; A Vela-Bueno; A Kales; G P Chrousos
Journal:  J Clin Endocrinol Metab       Date:  2001-04       Impact factor: 5.958

6.  Testosterone suppression of CRH-stimulated cortisol in men.

Authors:  David R Rubinow; Catherine A Roca; Peter J Schmidt; Merry A Danaceau; Karen Putnam; Giovanni Cizza; George Chrousos; Lynnette Nieman
Journal:  Neuropsychopharmacology       Date:  2005-10       Impact factor: 7.853

7.  Hormonal correlates of paternal responsiveness in new and expectant fathers.

Authors: 
Journal:  Evol Hum Behav       Date:  2000-03-01       Impact factor: 4.178

8.  A corticotropin-releasing hormone antisense oligodeoxynucleotide reduces spontaneous waking in the rat.

Authors:  Fang-Chia Chang; Mark R Opp
Journal:  Regul Pept       Date:  2004-01-15

Review 9.  The role of cytokines in sleep regulation.

Authors:  James M Krueger
Journal:  Curr Pharm Des       Date:  2008       Impact factor: 3.116

Review 10.  Sleep and metabolic control: waking to a problem?

Authors:  Michael I Trenell; Nathaniel S Marshall; Naomi L Rogers
Journal:  Clin Exp Pharmacol Physiol       Date:  2007 Jan-Feb       Impact factor: 2.557

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  16 in total

1.  Classification-by-Analogy: Using Vector Representations of Implicit Relationships to Identify Plausibly Causal Drug/Side-effect Relationships.

Authors:  Justin Mower; Devika Subramanian; Ning Shang; Trevor Cohen
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

2.  Biomedical text mining for research rigor and integrity: tasks, challenges, directions.

Authors:  Halil Kilicoglu
Journal:  Brief Bioinform       Date:  2018-11-27       Impact factor: 11.622

3.  A literature-based assessment of concept pairs as a measure of semantic relatedness.

Authors:  T Elizabeth Workman; Graciela Rosemblat; Marcelo Fiszman; Thomas C Rindflesch
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

4.  Automating case definitions using literature-based reasoning.

Authors:  T Botsis; R Ball
Journal:  Appl Clin Inform       Date:  2013-10-30       Impact factor: 2.342

5.  Rediscovering Don Swanson: the Past, Present and Future of Literature-Based Discovery.

Authors:  Neil R Smalheiser
Journal:  J Data Inf Sci       Date:  2017-12

6.  Semantic MEDLINE for discovery browsing: using semantic predications and the literature-based discovery paradigm to elucidate a mechanism for the obesity paradox.

Authors:  Michael J Cairelli; Christopher M Miller; Marcelo Fiszman; T Elizabeth Workman; Thomas C Rindflesch
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

7.  SemMedDB: a PubMed-scale repository of biomedical semantic predications.

Authors:  Halil Kilicoglu; Dongwook Shin; Marcelo Fiszman; Graciela Rosemblat; Thomas C Rindflesch
Journal:  Bioinformatics       Date:  2012-10-08       Impact factor: 6.937

8.  Extending SemRep to the Public Health Domain.

Authors:  Graciela Rosemblat; Melissa P Resnick; Ione Auston; Dongwook Shin; Charles Sneiderman; Marcelo Fizsman; Thomas C Rindflesch
Journal:  J Am Soc Inf Sci Technol       Date:  2013-10

9.  A methodology for extending domain coverage in SemRep.

Authors:  Graciela Rosemblat; Dongwook Shin; Halil Kilicoglu; Charles Sneiderman; Thomas C Rindflesch
Journal:  J Biomed Inform       Date:  2013-08-21       Impact factor: 6.317

10.  Networks of neuroinjury semantic predications to identify biomarkers for mild traumatic brain injury.

Authors:  Michael J Cairelli; Marcelo Fiszman; Han Zhang; Thomas C Rindflesch
Journal:  J Biomed Semantics       Date:  2015-05-18
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