Literature DB >> 24729747

Extending SemRep to the Public Health Domain.

Graciela Rosemblat1, Melissa P Resnick1, Ione Auston1, Dongwook Shin1, Charles Sneiderman1, Marcelo Fizsman1, Thomas C Rindflesch1.   

Abstract

We describe the use of a domain-independent methodology to extend a natural language processing (NLP) application, SemRep (Rindflesch, Fiszman, & Libbus, 2005), based on the knowledge sources afforded by the Unified Medical Language System (UMLS®) (Humphreys, Lindberg, Schoolman, & Barnett, 1998) to support the area of health promotion within the public health domain. Public health professionals require good information about successful health promotion policies and programs that might be considered for application within their own communities. Our effort seeks to improve access to relevant information for the public health profession, to help those in the field remain an information-savvy workforce. NLP and semantic techniques hold promise to help public health professionals navigate the growing ocean of information by organizing and structuring this knowledge into a focused public health framework paired with a user-friendly visualization application as a way to summarize results of PubMed searches in this field of knowledge.

Entities:  

Keywords:  Health Promotion; Natural Language Processing; Public Health; Semantic Predications; Semi-Automated Ontology Development

Year:  2013        PMID: 24729747      PMCID: PMC3981099          DOI: 10.1002/asi.22899

Source DB:  PubMed          Journal:  J Am Soc Inf Sci Technol        ISSN: 1532-2882


  19 in total

Review 1.  Public health quality measurement: concepts and challenges.

Authors:  Stephen F Derose; Mark A Schuster; Jonathan E Fielding; Steven M Asch
Journal:  Annu Rev Public Health       Date:  2001-10-25       Impact factor: 21.981

2.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

3.  What is a "health disparity"?

Authors:  Olivia Carter-Pokras; Claudia Baquet
Journal:  Public Health Rep       Date:  2002 Sep-Oct       Impact factor: 2.792

Review 4.  Actual causes of death in the United States, 2000.

Authors:  Ali H Mokdad; James S Marks; Donna F Stroup; Julie L Gerberding
Journal:  JAMA       Date:  2004-03-10       Impact factor: 56.272

5.  Semantic web representation of LOINC: an ontological perspective.

Authors:  Arunkumar Srinivasan; Narendra Kunapareddy; Parsa Mirhaji; S Ward Casscells
Journal:  AMIA Annu Symp Proc       Date:  2006

6.  Methodology to develop and evaluate a semantic representation for NLP.

Authors:  Jeannie Y Irwin; Henk Harkema; Lee M Christensen; Titus Schleyer; Peter J Haug; Wendy W Chapman
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

Review 7.  A closed literature-based discovery technique finds a mechanistic link between hypogonadism and diminished sleep quality in aging men.

Authors:  Christopher M Miller; Thomas C Rindflesch; Marcelo Fiszman; Dimitar Hristovski; Dongwook Shin; Graciela Rosemblat; Han Zhang; Kingman P Strohl
Journal:  Sleep       Date:  2012-02-01       Impact factor: 5.849

8.  Word Sense Disambiguation by Selecting the Best Semantic Type Based on Journal Descriptor Indexing: Preliminary Experiment.

Authors:  Susanne M Humphrey; Willie J Rogers; Halil Kilicoglu; Dina Demner-Fushman; Thomas C Rindflesch
Journal:  J Am Soc Inf Sci Technol       Date:  2006-01-01

9.  Identifying strategies to improve access to credible and relevant information for public health professionals: a qualitative study.

Authors:  Nancy R LaPelle; Roger Luckmann; E Hatheway Simpson; Elaine R Martin
Journal:  BMC Public Health       Date:  2006-04-05       Impact factor: 3.295

10.  Muscle Research and Gene Ontology: New standards for improved data integration.

Authors:  Erika Feltrin; Stefano Campanaro; Alexander D Diehl; Elisabeth Ehler; Georgine Faulkner; Jennifer Fordham; Chiara Gardin; Midori Harris; David Hill; Ralph Knoell; Paolo Laveder; Lorenza Mittempergher; Alessandra Nori; Carlo Reggiani; Vincenzo Sorrentino; Pompeo Volpe; Ivano Zara; Giorgio Valle; Jennifer Deegan
Journal:  BMC Med Genomics       Date:  2009-01-29       Impact factor: 3.063

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  5 in total

1.  Evaluating active learning methods for annotating semantic predications.

Authors:  Jake Vasilakes; Rubina Rizvi; Genevieve B Melton; Serguei Pakhomov; Rui Zhang
Journal:  JAMIA Open       Date:  2018-06-27

2.  A methodology for extending domain coverage in SemRep.

Authors:  Graciela Rosemblat; Dongwook Shin; Halil Kilicoglu; Charles Sneiderman; Thomas C Rindflesch
Journal:  J Biomed Inform       Date:  2013-08-21       Impact factor: 6.317

3.  Integrating Unified Medical Language System and Kleinberg's Burst Detection Algorithm into Research Topics of Medications for Post-Traumatic Stress Disorder.

Authors:  Shuang Xu; Dan Xu; Liang Wen; Chen Zhu; Ying Yang; Shuang Han; Peng Guan
Journal:  Drug Des Devel Ther       Date:  2020-09-24       Impact factor: 4.162

4.  Lightweight predicate extraction for patient-level cancer information and ontology development.

Authors:  Muhammad Amith; Hsing-Yi Song; Yaoyun Zhang; Hua Xu; Cui Tao
Journal:  BMC Med Inform Decis Mak       Date:  2017-07-05       Impact factor: 2.796

5.  Broad-coverage biomedical relation extraction with SemRep.

Authors:  Halil Kilicoglu; Graciela Rosemblat; Marcelo Fiszman; Dongwook Shin
Journal:  BMC Bioinformatics       Date:  2020-05-14       Impact factor: 3.169

  5 in total

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