Literature DB >> 22281810

A test of improved force field parameters for urea: molecular-dynamics simulations of urea crystals.

Gül Altınbaş Özpınar1, Frank R Beierlein, Wolfgang Peukert, Dirk Zahn, Timothy Clark.   

Abstract

Molecular-dynamics (MD) simulations of urea crystals of different shapes (cubic, rectangular prismatic, and sheet) have been performed using our previously published force field for urea. This force field has been validated by calculating values for the cohesive energy, sublimation temperature, and melting point from the MD data. The cohesive energies computed from simulations of cubic and rectangular prismatic urea crystals in vacuo at 300 K agreed very well with the experimental sublimation enthalpies reported at 298 K. We also found very good agreement between the melting points as observed experimentally and from simulations. Annealing the crystals just below the melting point leads to reconstruction to form crystal faces that are consistent with experimental observations. The simulations reveal a melting mechanism that involves surface (corner/edge) melting well below the melting point, and rotational disordering of the urea molecules in the corner/edge regions of the crystal, which then facilitates the translational motion of these molecules.

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Year:  2012        PMID: 22281810     DOI: 10.1007/s00894-011-1336-5

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  11 in total

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5.  Ab initio investigation of structure and cohesive energy of crystalline urea.

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Authors:  Gül Altinbaş Ozpinar; Wolfgang Peukert; Timothy Clark
Journal:  J Mol Model       Date:  2010-02-17       Impact factor: 1.810

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8.  Energy functions for peptides and proteins. I. Derivation of a consistent force field including the hydrogen bond from amide crystals.

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Review 9.  Pharmaceutical applications of polymorphism.

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10.  Atomistic mechanisms of ZnO aggregation from ethanolic solution: ion association, proton transfer, and self-organization.

Authors:  Agnieszka Kawska; Patrick Duchstein; Oliver Hochrein; Dirk Zahn
Journal:  Nano Lett       Date:  2008-06-24       Impact factor: 11.189

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  1 in total

1.  DNA-Dye-Conjugates: Conformations and Spectra of Fluorescence Probes.

Authors:  Frank R Beierlein; Miguel Paradas Palomo; Dmitry I Sharapa; Oleksii Zozulia; Andriy Mokhir; Timothy Clark
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  1 in total

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