Literature DB >> 10927338

Electron density study of urea using TDS-corrected X-ray diffraction data: quantitative comparison of experimental and theoretical results.

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Abstract

The electron-density distribution in urea, CO(NH(2))(2), was studied by high-precision single-crystal X-ray diffraction analysis at 148 (1) K. An experimental correction for TDS was applied to the X-ray intensities. R(merge)(F(2)) = 0.015. The displacement parameters agree quite well with results from neutron diffraction. The deformation density was obtained by refinement of 145 unique low-order reflections with the Hansen & Coppens [Acta Cryst. (1978), A34, 909-921] multipole model, resulting in R = 0.008, wR = 0.011 and S = 1.09. Orbital calculations were carried out applying different potentials to account for correlation and exchange: Hartree-Fock (HF), density-functional theory/local density approximation (DFT/LDA) and density-functional theory/generalized gradient approximation (DFT/GGA). Extensive comparisons of the deformation densities and structure factors were made between the results of the various calculations and the outcome of the refinement. The agreement between the experimental and theoretical results is excellent, judged by the deformation density and the structure factors [wR(HF) = 0.023, wR(DFT) = 0.019] and fair with respect to the results of a topological analysis. Density-functional calculations seem to yield slightly better results than Hartree-Fock calculations.

Entities:  

Year:  1999        PMID: 10927338     DOI: 10.1107/s0108768198005746

Source DB:  PubMed          Journal:  Acta Crystallogr B        ISSN: 0108-7681


  5 in total

1.  A test of improved force field parameters for urea: molecular-dynamics simulations of urea crystals.

Authors:  Gül Altınbaş Özpınar; Frank R Beierlein; Wolfgang Peukert; Dirk Zahn; Timothy Clark
Journal:  J Mol Model       Date:  2012-01-27       Impact factor: 1.810

2.  An improved generalized AMBER force field (GAFF) for urea.

Authors:  Gül Altinbaş Ozpinar; Wolfgang Peukert; Timothy Clark
Journal:  J Mol Model       Date:  2010-02-17       Impact factor: 1.810

3.  Accurate high-resolution single-crystal diffraction data from a Pilatus3 X CdTe detector.

Authors:  Lennard Krause; Kasper Tolborg; Thomas Bjørn Egede Grønbech; Kunihisa Sugimoto; Bo Brummerstedt Iversen; Jacob Overgaard
Journal:  J Appl Crystallogr       Date:  2020-04-23       Impact factor: 3.304

4.  Assembling the Puzzle of Taxifolin Polymorphism.

Authors:  Roman P Terekhov; Irina A Selivanova; Nonna A Tyukavkina; Igor R Ilyasov; Anastasiya K Zhevlakova; Alexander V Dzuban; Anatoliy G Bogdanov; Georgiy N Davidovich; Gennadii V Shylov; Andrey N Utenishev; Dmitriy Yu Kovalev; Anatoliy A Fenin; Tatyana G Kabluchko
Journal:  Molecules       Date:  2020-11-20       Impact factor: 4.411

5.  Validation of experimental charge-density refinement strategies: when do we overfit?

Authors:  Lennard Krause; Benedikt Niepötter; Christian J Schürmann; Dietmar Stalke; Regine Herbst-Irmer
Journal:  IUCrJ       Date:  2017-05-24       Impact factor: 4.769

  5 in total

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