Literature DB >> 17201425

Ab initio investigation of structure and cohesive energy of crystalline urea.

B Civalleri1, K Doll, C M Zicovich-Wilson.   

Abstract

The structure and cohesive energy of crystalline urea have been investigated at the ab initio level of calculation. The performance of different Hamiltonians in dealing with a hydrogen-bonded molecular crystal as crystalline urea is assessed. Detailed calculations carried out by adopting both HF and some of the most popular DFT methods in solid-state chemistry are reported. Local, gradient-corrected, and hybrid functionals have been adopted: SVWN, PW91, PBE, B3LYP, and PBE0. First, a 6-31G(d,p) basis set has been adopted, and then the basis set dependence of computed results has been investigated at the B3LYP level. All calculations were carried out by using a development version of the periodic ab initio code CRYSTAL06, which allows full optimization of lattice parameters and atomic coordinates. With the 6-31G(d,p) basis set, structural features are well reproduced by hybrid methods and GGA. LDA gives lattice parameters and hydrogen-bond distances that are too small relative to experiment, while at the HF level the opposite trend is observed. Results show that hybrid methods are more accurate than HF and both LDA and GGA functionals, with a trend in the computed properties similar to that of hydrogen-bonded molecular complexes. When BSSE and ZPE are taken into account, all methods, except LDA, give computed cohesive energies that are underestimated with respect to the experimental sublimation enthalpy. Dispersion energy, not properly taken into account by DFT methods, plays a crucial role. Such a deficiency also affects dramatically the computed crystalline structure, especially when large basis sets are adopted. We show that this is an artifact due to the BSSE. Indeed, with small basis sets the BSSE gives an extra-binding that compensates for the missing dispersion forces, thus yielding structures in fortuitous agreement with experiment.

Entities:  

Year:  2007        PMID: 17201425     DOI: 10.1021/jp065757c

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

1.  A test of improved force field parameters for urea: molecular-dynamics simulations of urea crystals.

Authors:  Gül Altınbaş Özpınar; Frank R Beierlein; Wolfgang Peukert; Dirk Zahn; Timothy Clark
Journal:  J Mol Model       Date:  2012-01-27       Impact factor: 1.810

2.  An improved generalized AMBER force field (GAFF) for urea.

Authors:  Gül Altinbaş Ozpinar; Wolfgang Peukert; Timothy Clark
Journal:  J Mol Model       Date:  2010-02-17       Impact factor: 1.810

3.  Impact of dihydrogen bonding on lattice energies and sublimation enthalpies of crystalline [H2GaNH2]3, [H2BNH2]3 and [H2GeCH2]3.

Authors:  Wayne L Gladfelter; Christopher J Cramer
Journal:  RSC Adv       Date:  2019-09-17       Impact factor: 4.036

4.  Recent developments in the Inorganic Crystal Structure Database: theoretical crystal structure data and related features.

Authors:  D Zagorac; H Müller; S Ruehl; J Zagorac; S Rehme
Journal:  J Appl Crystallogr       Date:  2019-09-23       Impact factor: 3.304

5.  Controlling the aqueous growth of urea crystals with different growth inhibitors: a molecular-scale study.

Authors:  M K Singh
Journal:  RSC Adv       Date:  2021-04-06       Impact factor: 3.361

6.  A variable-temperature X-ray diffraction and theoretical study of conformational polymorphism in a complex organic molecule (DTC).

Authors:  Andrea Gionda; Giovanni Macetti; Laura Loconte; Silvia Rizzato; Ahmed M Orlando; Carlo Gatti; Leonardo Lo Presti
Journal:  RSC Adv       Date:  2018-11-14       Impact factor: 3.361

  6 in total

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