Literature DB >> 22275364

RAD51 protein ATP cap regulates nucleoprotein filament stability.

Ravindra Amunugama1, Yujiong He, Smaranda Willcox, Robert A Forties, Kang-Sup Shim, Ralf Bundschuh, Yu Luo, Jack Griffith, Richard Fishel.   

Abstract

RAD51 mediates homologous recombination by forming an active DNA nucleoprotein filament (NPF). A conserved aspartate that forms a salt bridge with the ATP γ-phosphate is found at the nucleotide-binding interface between RAD51 subunits of the NPF known as the ATP cap. The salt bridge accounts for the nonphysiological cation(s) required to fully activate the RAD51 NPF. In contrast, RecA homologs and most RAD51 paralogs contain a conserved lysine at the analogous structural position. We demonstrate that substitution of human RAD51(Asp-316) with lysine (HsRAD51(D316K)) decreases NPF turnover and facilitates considerably improved recombinase functions. Structural analysis shows that archaebacterial Methanococcus voltae RadA(D302K) (MvRAD51(D302K)) and HsRAD51(D316K) form extended active NPFs without salt. These studies suggest that the HsRAD51(Asp-316) salt bridge may function as a conformational sensor that enhances turnover at the expense of recombinase activity.

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Year:  2012        PMID: 22275364      PMCID: PMC3308741          DOI: 10.1074/jbc.M111.239426

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  48 in total

1.  Complex formation by the human RAD51C and XRCC3 recombination repair proteins.

Authors:  J Y Masson; A Z Stasiak; A Stasiak; F E Benson; S C West
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

2.  RAD51C interacts with RAD51B and is central to a larger protein complex in vivo exclusive of RAD51.

Authors:  Kristi A Miller; Daniel M Yoshikawa; Ian R McConnell; Robin Clark; David Schild; Joanna S Albala
Journal:  J Biol Chem       Date:  2001-12-13       Impact factor: 5.157

3.  Identification and purification of two distinct complexes containing the five RAD51 paralogs.

Authors:  J Y Masson; M C Tarsounas; A Z Stasiak; A Stasiak; R Shah; M J McIlwraith; F E Benson; S C West
Journal:  Genes Dev       Date:  2001-12-15       Impact factor: 11.361

4.  Mediator function of the human Rad51B-Rad51C complex in Rad51/RPA-catalyzed DNA strand exchange.

Authors:  S Sigurdsson; S Van Komen; W Bussen; D Schild; J S Albala; P Sung
Journal:  Genes Dev       Date:  2001-12-15       Impact factor: 11.361

5.  The Rad51-dependent pairing of long DNA substrates is stabilized by replication protein A.

Authors:  Aimee L Eggler; Ross B Inman; Michael M Cox
Journal:  J Biol Chem       Date:  2002-08-06       Impact factor: 5.157

6.  Functional cross-talk among Rad51, Rad54, and replication protein A in heteroduplex DNA joint formation.

Authors:  Stephen Van Komen; Galina Petukhova; Stefan Sigurdsson; Patrick Sung
Journal:  J Biol Chem       Date:  2002-09-10       Impact factor: 5.157

7.  The hRad51 and RecA proteins show significant differences in cooperative binding to single-stranded DNA.

Authors:  J K De Zutter; K L Knight
Journal:  J Mol Biol       Date:  1999-11-05       Impact factor: 5.469

8.  Basis for avid homologous DNA strand exchange by human Rad51 and RPA.

Authors:  S Sigurdsson; K Trujillo; B Song; S Stratton; P Sung
Journal:  J Biol Chem       Date:  2000-12-20       Impact factor: 5.157

9.  Activation of human meiosis-specific recombinase Dmc1 by Ca2+.

Authors:  Dmitry V Bugreev; Efim I Golub; Alicja Z Stasiak; Andrzej Stasiak; Alexander V Mazin
Journal:  J Biol Chem       Date:  2005-05-25       Impact factor: 5.157

10.  Biochemical characterization of the human RAD51 protein. I. ATP hydrolysis.

Authors:  Gregory Tombline; Richard Fishel
Journal:  J Biol Chem       Date:  2002-02-11       Impact factor: 5.157

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  16 in total

1.  Mismatch repair protein hMSH2-hMSH6 recognizes mismatches and forms sliding clamps within a D-loop recombination intermediate.

Authors:  Masayoshi Honda; Yusuke Okuno; Sarah R Hengel; Juana V Martín-López; Christopher P Cook; Ravindra Amunugama; Randal J Soukup; Shyamal Subramanyam; Richard Fishel; Maria Spies
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-06       Impact factor: 11.205

2.  Dynamic control of strand excision during human DNA mismatch repair.

Authors:  Yongmoon Jeon; Daehyung Kim; Juana V Martín-López; Ryanggeun Lee; Jungsic Oh; Jeungphill Hanne; Richard Fishel; Jong-Bong Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-07       Impact factor: 11.205

3.  Structure of a filament of stacked octamers of human DMC1 recombinase.

Authors:  Liqin Du; Yu Luo
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-03-28

4.  Evolution of cation binding in the active sites of P-loop nucleoside triphosphatases in relation to the basic catalytic mechanism.

Authors:  Daria N Shalaeva; Dmitry A Cherepanov; Michael Y Galperin; Andrey V Golovin; Armen Y Mulkidjanian
Journal:  Elife       Date:  2018-12-11       Impact factor: 8.140

5.  Functional Relationship of ATP Hydrolysis, Presynaptic Filament Stability, and Homologous DNA Pairing Activity of the Human Meiotic Recombinase DMC1.

Authors:  Hao-Yen Chang; Chia-Yu Liao; Guan-Chin Su; Sheng-Wei Lin; Hong-Wei Wang; Peter Chi
Journal:  J Biol Chem       Date:  2015-06-18       Impact factor: 5.157

6.  Cryo-EM structures of human RAD51 recombinase filaments during catalysis of DNA-strand exchange.

Authors:  Jingfei Xu; Lingyun Zhao; Yuanyuan Xu; Weixing Zhao; Patrick Sung; Hong-Wei Wang
Journal:  Nat Struct Mol Biol       Date:  2016-12-12       Impact factor: 15.369

7.  Tyrosine phosphorylation stimulates activity of human RAD51 recombinase through altered nucleoprotein filament dynamics.

Authors:  Shyamal Subramanyam; Mohammed Ismail; Ipshita Bhattacharya; Maria Spies
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-26       Impact factor: 11.205

8.  The HsRAD51B-HsRAD51C stabilizes the HsRAD51 nucleoprotein filament.

Authors:  Ravindra Amunugama; Joanna Groden; Richard Fishel
Journal:  DNA Repair (Amst)       Date:  2013-06-28

9.  Molecular modeling and molecular dynamics simulations of recombinase Rad51.

Authors:  Yuichi Kokabu; Mitsunori Ikeguchi
Journal:  Biophys J       Date:  2013-04-02       Impact factor: 4.033

10.  Mechanisms of distinctive mismatch tolerance between Rad51 and Dmc1 in homologous recombination.

Authors:  Jingfei Xu; Lingyun Zhao; Sijia Peng; Huiying Chu; Rui Liang; Meng Tian; Philip P Connell; Guohui Li; Chunlai Chen; Hong-Wei Wang
Journal:  Nucleic Acids Res       Date:  2021-12-16       Impact factor: 16.971

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