Literature DB >> 22275105

Genome sequences of six Pseudoalteromonas strains isolated from Arctic sea ice.

Fei Bian1, Bin-Bin Xie, Qi-Long Qin, Yan-Li Shu, Xi-Ying Zhang, Yong Yu, Bo Chen, Xiu-Lan Chen, Bai-Cheng Zhou, Yu-Zhong Zhang.   

Abstract

Yu et al. (Polar Biol. 32:1539-1547, 2009) isolated 199 Pseudoalteromonas strains from Arctic sea ice. We sequenced the genomes of six of these strains, which are affiliated to different Pseudoalteromonas species based on 16S rRNA gene sequences, facilitating the study of physiology and adaptation of Arctic sea ice Pseudoalteromonas strains.

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Year:  2012        PMID: 22275105      PMCID: PMC3272954          DOI: 10.1128/JB.06427-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  10 in total

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Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

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Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
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3.  KEGG: Kyoto Encyclopedia of Genes and Genomes.

Authors:  H Ogata; S Goto; K Sato; W Fujibuchi; H Bono; M Kanehisa
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

4.  Pseudoalteromonas antarctica sp. nov., isolated from an Antarctic coastal environment.

Authors:  N Bozal; E Tudela; R Rosselló-Mora; J Lalucat; J Guinea
Journal:  Int J Syst Bacteriol       Date:  1997-04

5.  Pseudoalteromonas byunsanensis sp. nov., isolated from tidal flat sediment in Korea.

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6.  Pseudoalteromonas prydzensis sp. nov., a psychrotrophic, halotolerant bacterium form Antarctic sea ice.

Authors:  J P Bowman
Journal:  Int J Syst Bacteriol       Date:  1998-07

7.  Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913.

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8.  Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125.

Authors:  Claudine Médigue; Evelyne Krin; Géraldine Pascal; Valérie Barbe; Andreas Bernsel; Philippe N Bertin; Frankie Cheung; Stéphane Cruveiller; Salvino D'Amico; Angela Duilio; Gang Fang; Georges Feller; Christine Ho; Sophie Mangenot; Gennaro Marino; Johan Nilsson; Ermenegilda Parrilli; Eduardo P C Rocha; Zoé Rouy; Agnieszka Sekowska; Maria Luisa Tutino; David Vallenet; Gunnar von Heijne; Antoine Danchin
Journal:  Genome Res       Date:  2005-09-16       Impact factor: 9.043

9.  Pseudoalteromonas arctica sp. nov., an aerobic, psychrotolerant, marine bacterium isolated from Spitzbergen.

Authors:  Rami Al Khudary; Nele Isabelle Stösser; Farah Qoura; Garabed Antranikian
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10.  Analysis of the Pseudoalteromonas tunicata genome reveals properties of a surface-associated life style in the marine environment.

Authors:  Torsten Thomas; Flavia F Evans; David Schleheck; Anne Mai-Prochnow; Catherine Burke; Anahit Penesyan; Doralyn S Dalisay; Sacha Stelzer-Braid; Neil Saunders; Justin Johnson; Steve Ferriera; Staffan Kjelleberg; Suhelen Egan
Journal:  PLoS One       Date:  2008-09-24       Impact factor: 3.240

  10 in total
  10 in total

1.  Genome sequences of type strains of seven species of the marine bacterium Pseudoalteromonas.

Authors:  Bin-Bin Xie; Yan-Li Shu; Qi-Long Qin; Jin-Cheng Rong; Xi-Ying Zhang; Xiu-Lan Chen; Mei Shi; Hai-Lun He; Bai-Cheng Zhou; Yu-Zhong Zhang
Journal:  J Bacteriol       Date:  2012-05       Impact factor: 3.490

2.  Comparative analysis of mobilizable genomic islands.

Authors:  Aurélie Daccord; Daniela Ceccarelli; Sébastien Rodrigue; Vincent Burrus
Journal:  J Bacteriol       Date:  2012-11-30       Impact factor: 3.490

3.  Isolation and Complete Sequence of One Novel Marine Bacteriophage PHS21 Infecting Pseudoalteromonas marina.

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4.  Isolation and Genome Sequencing of a Novel Pseudoalteromonas Phage PH1.

Authors:  Zhaoyang Liu; Min Wang; Xue Meng; Yan Li; Duobing Wang; Yong Jiang; Hongbing Shao; Yaoyuan Zhang
Journal:  Curr Microbiol       Date:  2016-12-09       Impact factor: 2.188

5.  Morphology, physiological characteristics, and complete sequence of marine bacteriophage ϕRIO-1 infecting Pseudoalteromonas marina.

Authors:  Stephen C Hardies; Yeon J Hwang; Chung Y Hwang; Gwang I Jang; Byung C Cho
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6.  Development of an efficient conjugation-based genetic manipulation system for Pseudoalteromonas.

Authors:  Pengxia Wang; Zichao Yu; Baiyuan Li; Xingsheng Cai; Zhenshun Zeng; Xiulan Chen; Xiaoxue Wang
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7.  Six Pseudoalteromonas Strains Isolated from Surface Waters of Kabeltonne, Offshore Helgoland, North Sea.

Authors:  Melissa B Duhaime; Antje Wichels; Matthew B Sullivan
Journal:  Genome Announc       Date:  2016-02-11

8.  MALDI-TOF Mass Spectrometry Discriminates Known Species and Marine Environmental Isolates of Pseudoalteromonas.

Authors:  Kaveh Emami; Andrew Nelson; Ethan Hack; Jinwei Zhang; David H Green; Gary S Caldwell; Ehsan Mesbahi
Journal:  Front Microbiol       Date:  2016-02-12       Impact factor: 5.640

9.  Draft Genome Sequence of Pseudoalteromonas sp. Strain R3, a Red-Pigmented l-Amino Acid Oxidase-Producing Bacterium.

Authors:  Zhiliang Yu; Minyan Zhao; Juanping Qiu
Journal:  Genome Announc       Date:  2015-11-19

10.  Filamentous phages prevalent in Pseudoalteromonas spp. confer properties advantageous to host survival in Arctic sea ice.

Authors:  Zi-Chao Yu; Xiu-Lan Chen; Qing-Tao Shen; Dian-Li Zhao; Bai-Lu Tang; Hai-Nan Su; Zhao-Yu Wu; Qi-Long Qin; Bin-Bin Xie; Xi-Ying Zhang; Yong Yu; Bai-Cheng Zhou; Bo Chen; Yu-Zhong Zhang
Journal:  ISME J       Date:  2015-03-17       Impact factor: 10.302

  10 in total

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