Literature DB >> 22535931

Genome sequences of type strains of seven species of the marine bacterium Pseudoalteromonas.

Bin-Bin Xie1, Yan-Li Shu, Qi-Long Qin, Jin-Cheng Rong, Xi-Ying Zhang, Xiu-Lan Chen, Mei Shi, Hai-Lun He, Bai-Cheng Zhou, Yu-Zhong Zhang.   

Abstract

There are over 30 species in the marine bacterial genus Pseudoalteromonas. However, our knowledge about this genus is still limited. We sequenced the genomes of type strains of seven species in the genus, facilitating the study of the physiology, adaptation, and evolution of this genus.

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Year:  2012        PMID： 22535931      PMCID： PMC3347206          DOI： 10.1128/JB.00265-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  Solexa Ltd.

Authors:  Simon Bennett
Journal:  Pharmacogenomics       Date:  2004-06       Impact factor: 2.533

2.  Genome sequences of six Pseudoalteromonas strains isolated from Arctic sea ice.

Authors:  Fei Bian; Bin-Bin Xie; Qi-Long Qin; Yan-Li Shu; Xi-Ying Zhang; Yong Yu; Bo Chen; Xiu-Lan Chen; Bai-Cheng Zhou; Yu-Zhong Zhang
Journal:  J Bacteriol       Date:  2012-02       Impact factor: 3.490

3.  Genome sequence of the cycloprodigiosin-producing bacterial strain Pseudoalteromonas rubra ATCC 29570(T).

Authors:  Bin-Bin Xie; Yan-Li Shu; Qi-Long Qin; Jin-Cheng Rong; Xi-Ying Zhang; Xiu-Lan Chen; Bai-Cheng Zhou; Yu-Zhong Zhang
Journal:  J Bacteriol       Date:  2012-03       Impact factor: 3.490

4.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

5.  KEGG: Kyoto Encyclopedia of Genes and Genomes.

Authors:  H Ogata; S Goto; K Sato; W Fujibuchi; H Bono; M Kanehisa
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

6.  Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913.

Authors:  Qi-Long Qin; Yang Li; Yan-Jiao Zhang; Zhe-Min Zhou; Wei-Xin Zhang; Xiu-Lan Chen; Xi-Ying Zhang; Bai-Cheng Zhou; Lei Wang; Yu-Zhong Zhang
Journal:  ISME J       Date:  2010-08-12       Impact factor: 10.302

7.  Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125.

Authors:  Claudine Médigue; Evelyne Krin; Géraldine Pascal; Valérie Barbe; Andreas Bernsel; Philippe N Bertin; Frankie Cheung; Stéphane Cruveiller; Salvino D'Amico; Angela Duilio; Gang Fang; Georges Feller; Christine Ho; Sophie Mangenot; Gennaro Marino; Johan Nilsson; Ermenegilda Parrilli; Eduardo P C Rocha; Zoé Rouy; Agnieszka Sekowska; Maria Luisa Tutino; David Vallenet; Gunnar von Heijne; Antoine Danchin
Journal:  Genome Res       Date:  2005-09-16       Impact factor: 9.043

8.  Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations.

Authors:  G Gauthier; M Gauthier; R Christen
Journal:  Int J Syst Bacteriol       Date:  1995-10

9.  Bioactive compound synthetic capacity and ecological significance of marine bacterial genus pseudoalteromonas.

Authors:  John P Bowman
Journal:  Mar Drugs       Date:  2007-12-18       Impact factor: 5.118

10.  Analysis of the Pseudoalteromonas tunicata genome reveals properties of a surface-associated life style in the marine environment.

Authors:  Torsten Thomas; Flavia F Evans; David Schleheck; Anne Mai-Prochnow; Catherine Burke; Anahit Penesyan; Doralyn S Dalisay; Sacha Stelzer-Braid; Neil Saunders; Justin Johnson; Steve Ferriera; Staffan Kjelleberg; Suhelen Egan
Journal:  PLoS One       Date:  2008-09-24       Impact factor: 3.240
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  7 in total

1.  MS/MS networking guided analysis of molecule and gene cluster families.

Authors:  Don Duy Nguyen; Cheng-Hsuan Wu; Wilna J Moree; Anne Lamsa; Marnix H Medema; Xiling Zhao; Ronnie G Gavilan; Marystella Aparicio; Librada Atencio; Chanaye Jackson; Javier Ballesteros; Joel Sanchez; Jeramie D Watrous; Vanessa V Phelan; Corine van de Wiel; Roland D Kersten; Samina Mehnaz; René De Mot; Elizabeth A Shank; Pep Charusanti; Harish Nagarajan; Brendan M Duggan; Bradley S Moore; Nuno Bandeira; Bernhard Ø Palsson; Kit Pogliano; Marcelino Gutiérrez; Pieter C Dorrestein
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

2.  Cloning, Expression, and Characterization of a Novel L-Arabinose Isomerase from the Psychrotolerant Bacterium Pseudoalteromonas haloplanktis.

Authors:  Wei Xu; Chen Fan; Tao Zhang; Bo Jiang; Wanmeng Mu
Journal:  Mol Biotechnol       Date:  2016-11       Impact factor: 2.695

3.  Alterocin, an Antibiofilm Protein Secreted by Pseudoalteromonas sp. Strain 3J6.

Authors:  Albane Jouault; Angélique Gobet; Marjolaine Simon; Emilie Portier; Morgan Perennou; Erwan Corre; Fanny Gaillard; David Vallenet; Gurvan Michel; Yannick Fleury; Alexis Bazire; Alain Dufour
Journal:  Appl Environ Microbiol       Date:  2020-10-01       Impact factor: 4.792

4.  Development of an efficient conjugation-based genetic manipulation system for Pseudoalteromonas.

Authors:  Pengxia Wang; Zichao Yu; Baiyuan Li; Xingsheng Cai; Zhenshun Zeng; Xiulan Chen; Xiaoxue Wang
Journal:  Microb Cell Fact       Date:  2015-01-23       Impact factor: 5.328

5.  Life-style and genome structure of marine Pseudoalteromonas siphovirus B8b isolated from the northwestern Mediterranean Sea.

Authors:  Elena Lara; Karin Holmfeldt; Natalie Solonenko; Elisabet Laia Sà; J Cesar Ignacio-Espinoza; Francisco M Cornejo-Castillo; Nathan C Verberkmoes; Dolors Vaqué; Matthew B Sullivan; Silvia G Acinas
Journal:  PLoS One       Date:  2015-01-14       Impact factor: 3.240

6.  Purification, Characterization, and Application for Preparation of Antioxidant Peptides of Extracellular Protease from Pseudoalteromonas sp. H2.

Authors:  Dan Liu; Jiafeng Huang; Cuiling Wu; Congling Liu; Ran Huang; Weng Wang; Tingting Yin; Xiaotao Yan; Hailun He; Leilei Chen
Journal:  Molecules       Date:  2019-09-16       Impact factor: 4.411

7.  New insights on Pseudoalteromonas haloplanktis TAC125 genome organization and benchmarks of genome assembly applications using next and third generation sequencing technologies.

Authors:  Weihong Qi; Andrea Colarusso; Miriam Olombrada; Ermenegilda Parrilli; Andrea Patrignani; Maria Luisa Tutino; Macarena Toll-Riera
Journal:  Sci Rep       Date:  2019-11-11       Impact factor: 4.379
  7 in total

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