Literature DB >> 22271458

CKC: isolation of nucleic acids from a diversity of plants using CTAB and silica columns.

David C Henderson1, John Hammond.   

Abstract

To assay for viruses in plant samples, we required a method for nucleic acid isolation that is rapid, simple, and applicable to the widest possible variety of plants. A protocol for isolation of total nucleic acid (TNA) was developed by combining common CTAB methods with silica spin columns. We report data on TNA purity and RNA quality from over 30 plant genera representing 25 families. Measurements showed that RNA is of high quality, and one-step RT-PCR was successfully performed on all samples. The protocol can be completed in less than 2 h.

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Year:  2013        PMID: 22271458     DOI: 10.1007/s12033-012-9494-y

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  24 in total

1.  Extraction of high-quality genomic DNA from latex-containing plants.

Authors:  An Michiels; Wim Van den Ende; Mark Tucker; Liesbet Van Riet; André Van Laere
Journal:  Anal Biochem       Date:  2003-04-01       Impact factor: 3.365

2.  An efficient method for isolation of RNA and DNA from plants containing polyphenolics.

Authors:  M E John
Journal:  Nucleic Acids Res       Date:  1992-05-11       Impact factor: 16.971

3.  A simple and efficient method for isolation of DNA in high mucilaginous plant tissues.

Authors:  Ileana Echevarría-Machado; Lucila A Sánchez-Cach; Cecilia Hernández-Zepeda; Renata Rivera-Madrid; Oscar A Moreno-Valenzuela
Journal:  Mol Biotechnol       Date:  2005-10       Impact factor: 2.695

Review 4.  Microarrays for rapid identification of plant viruses.

Authors:  Neil Boonham; Jenny Tomlinson; Rick Mumford
Journal:  Annu Rev Phytopathol       Date:  2007       Impact factor: 13.078

Review 5.  Rapid sequence-based diagnosis of viral infection.

Authors:  Phenix-Lan Quan; Thomas Briese; Gustavo Palacios; W Ian Lipkin
Journal:  Antiviral Res       Date:  2008-03-07       Impact factor: 5.970

6.  Rapid and efficient isolation of high quality nucleic acids from plant tissues rich in polyphenols and polysaccharides.

Authors:  Reza Heidari Japelaghi; Raheem Haddad; Ghasem-Ali Garoosi
Journal:  Mol Biotechnol       Date:  2011-10       Impact factor: 2.695

7.  Rapid isolation of high molecular weight plant DNA.

Authors:  M G Murray; W F Thompson
Journal:  Nucleic Acids Res       Date:  1980-10-10       Impact factor: 16.971

8.  Multiplex RT-PCR detection of four aphid-borne strawberry viruses in Fragaria spp. in combination with a plant mRNA specific internal control.

Authors:  J R Thompson; S Wetzel; M M Klerks; D Vasková; C D Schoen; J Spak; W Jelkmann
Journal:  J Virol Methods       Date:  2003-08       Impact factor: 2.014

9.  A modified hot borate method significantly enhances the yield of high-quality RNA from cotton (Gossypium hirsutum L.).

Authors:  C Y Wan; T A Wilkins
Journal:  Anal Biochem       Date:  1994-11-15       Impact factor: 3.365

10.  A new arenavirus in a cluster of fatal transplant-associated diseases.

Authors:  Gustavo Palacios; Julian Druce; Lei Du; Thomas Tran; Chris Birch; Thomas Briese; Sean Conlan; Phenix-Lan Quan; Jeffrey Hui; John Marshall; Jan Fredrik Simons; Michael Egholm; Christopher D Paddock; Wun-Ju Shieh; Cynthia S Goldsmith; Sherif R Zaki; Mike Catton; W Ian Lipkin
Journal:  N Engl J Med       Date:  2008-02-06       Impact factor: 91.245

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  2 in total

1.  Lipid droplet-associated gene expression and chromatin remodelling in LIPASE 5'-upstream region from beginning- to mid-endodormant bud in 'Fuji' apple.

Authors:  Takanori Saito; Shanshan Wang; Katsuya Ohkawa; Hitoshi Ohara; Hiromi Ikeura; Yukiharu Ogawa; Satoru Kondo
Journal:  Plant Mol Biol       Date:  2017-10-10       Impact factor: 4.076

2.  The crucial role of PpMYB10.1 in anthocyanin accumulation in peach and relationships between its allelic type and skin color phenotype.

Authors:  Pham Anh Tuan; Songling Bai; Hideaki Yaegaki; Takayuki Tamura; Seisuke Hihara; Takaya Moriguchi; Kenji Oda
Journal:  BMC Plant Biol       Date:  2015-11-18       Impact factor: 4.215

  2 in total

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