Literature DB >> 12672415

Extraction of high-quality genomic DNA from latex-containing plants.

An Michiels1, Wim Van den Ende, Mark Tucker, Liesbet Van Riet, André Van Laere.   

Abstract

The isolation of intact, high-molecular-mass genomic DNA is essential for many molecular biology applications including long PCR, endonuclease restriction digestion, Southern blot analysis, and genomic library construction. Many protocols are available for the extraction of DNA from plant material. However, for latex-containing Asteraceae (Cichorioideae) species, standard protocols and commercially available kits do not produce efficient yields of high-quality amplifiable DNA. A cetyltrimethylammonium bromide protocol has been optimized for isolation of genomic DNA from latex-containing plants. Key steps in the modified protocol are the use of etiolated leaf tissue for extraction and an overnight 25 degrees C isopropanol precipitation step. The purified DNA has excellent spectral qualities, is efficiently digested by restriction endonucleases, and is suitable for long-fragment PCR amplification.

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Year:  2003        PMID: 12672415     DOI: 10.1016/s0003-2697(02)00665-6

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  27 in total

1.  Two micro-scale protocols for the isolation of DNA from polysaccharide-rich plant tissue.

Authors:  Lara D Shepherd; Todd G B McLay
Journal:  J Plant Res       Date:  2010-10-07       Impact factor: 2.629

2.  CKC: isolation of nucleic acids from a diversity of plants using CTAB and silica columns.

Authors:  David C Henderson; John Hammond
Journal:  Mol Biotechnol       Date:  2013-02       Impact factor: 2.695

3.  Promoter of the AlSAP gene from the halophyte grass Aeluropus littoralis directs developmental-regulated, stress-inducible, and organ-specific gene expression in transgenic tobacco.

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4.  Gene identification in black cohosh (Actaea racemosa L.): expressed sequence tag profiling and genetic screening yields candidate genes for production of bioactive secondary metabolites.

Authors:  Martin J Spiering; Lori A Urban; Donald L Nuss; Vivek Gopalan; Arlin Stoltzfus; Edward Eisenstein
Journal:  Plant Cell Rep       Date:  2010-12-28       Impact factor: 4.570

5.  Over-expression of a cacao class I chitinase gene in Theobroma cacao L. enhances resistance against the pathogen, Colletotrichum gloeosporioides.

Authors:  Siela N Maximova; Jean-Philippe Marelli; Ann Young; Sharon Pishak; Joseph A Verica; Mark J Guiltinan
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6.  Aspergillus loretoensis, a single isolate from marine sediment of Loreto Bay, Baja California Sur, México resulting as a new obligate halophile species.

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7.  Protocol for optimal quality and quantity pollen DNA isolation from honey samples.

Authors:  Ralte Lalhmangaihi; Souvik Ghatak; Ramachandra Laha; Guruswami Gurusubramanian; Nachimuthu Senthil Kumar
Journal:  J Biomol Tech       Date:  2014-12

8.  Protocol: a rapid and economical procedure for purification of plasmid or plant DNA with diverse applications in plant biology.

Authors:  Jian-Feng Li; Li Li; Jen Sheen
Journal:  Plant Methods       Date:  2010-01-14       Impact factor: 4.993

9.  Comparative functional analysis of two wheat Na(+)/H (+) antiporter SOS1 promoters in Arabidopsis thaliana under various stress conditions.

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Journal:  J Appl Genet       Date:  2014-08-01       Impact factor: 3.240

10.  Heterologous oligonucleotide microarrays for transcriptomics in a non-model species; a proof-of-concept study of drought stress in Musa.

Authors:  Mark W Davey; Neil S Graham; Bartel Vanholme; Rony Swennen; Sean T May; Johan Keulemans
Journal:  BMC Genomics       Date:  2009-09-16       Impact factor: 3.969

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