Literature DB >> 22266780

Genome analyses highlight the different biological roles of cellulases.

Felix Mba Medie1, Gideon J Davies, Michel Drancourt, Bernard Henrissat.   

Abstract

Cellulolytic enzymes have been the subject of renewed interest owing to their potential role in the conversion of plant lignocellulose to sustainable biofuels. An analysis of ∼1,500 complete bacterial genomes, presented here, reveals that ∼40% of the genomes of sequenced bacteria encode at least one cellulase gene. Most of the bacteria that encode cellulases are soil and marine saprophytes, many of which encode a range of enzymes for cellulose hydrolysis and also for the breakdown of the other constituents of plant cell walls (hemicelluloses and pectins). Intriguingly, cellulases are present in organisms that are usually considered as non-saprophytic, such as Mycobacterium tuberculosis, Legionella pneumophila, Yersinia pestis and even Escherichia coli. We also discuss newly emerging roles of cellulases in such non-saprophytic organisms.

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Year:  2012        PMID: 22266780     DOI: 10.1038/nrmicro2729

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  46 in total

Review 1.  Amoebae as training grounds for intracellular bacterial pathogens.

Authors:  Maëlle Molmeret; Matthias Horn; Michael Wagner; Marina Santic; Yousef Abu Kwaik
Journal:  Appl Environ Microbiol       Date:  2005-01       Impact factor: 4.792

2.  Biomass recalcitrance: engineering plants and enzymes for biofuels production.

Authors:  Michael E Himmel; Shi-You Ding; David K Johnson; William S Adney; Mark R Nimlos; John W Brady; Thomas D Foust
Journal:  Science       Date:  2007-02-09       Impact factor: 47.728

3.  A classification of glycosyl hydrolases based on amino acid sequence similarities.

Authors:  B Henrissat
Journal:  Biochem J       Date:  1991-12-01       Impact factor: 3.857

4.  Cleavage of cellulose by a CBM33 protein.

Authors:  Zarah Forsberg; Gustav Vaaje-Kolstad; Bjørge Westereng; Anne C Bunæs; Yngve Stenstrøm; Alasdair MacKenzie; Morten Sørlie; Svein J Horn; Vincent G H Eijsink
Journal:  Protein Sci       Date:  2011-08-08       Impact factor: 6.725

Review 5.  Structural and sequence-based classification of glycoside hydrolases.

Authors:  B Henrissat; G Davies
Journal:  Curr Opin Struct Biol       Date:  1997-10       Impact factor: 6.809

6.  Paradoxical conservation of a set of three cellulose-targeting genes in Mycobacterium tuberculosis complex organisms.

Authors:  Felix Mba Medie; Iskandar Ben Salah; Michel Drancourt; Bernard Henrissat
Journal:  Microbiology       Date:  2010-02-11       Impact factor: 2.777

7.  Temporal and spatial trigger of post-exponential virulence-associated regulatory cascades by Legionella pneumophila after bacterial escape into the host cell cytosol.

Authors:  Maëlle Molmeret; Snake Jones; Marina Santic; Fabien Habyarimana; Maria Teresa Garcia Esteban; Yousef Abu Kwaik
Journal:  Environ Microbiol       Date:  2009-12-02       Impact factor: 5.491

8.  Structures of oligosaccharide-bound forms of the endoglucanase V from Humicola insolens at 1.9 A resolution.

Authors:  G J Davies; S P Tolley; B Henrissat; C Hjort; M Schülein
Journal:  Biochemistry       Date:  1995-12-12       Impact factor: 3.162

9.  Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components.

Authors:  R Jason Quinlan; Matt D Sweeney; Leila Lo Leggio; Harm Otten; Jens-Christian N Poulsen; Katja Salomon Johansen; Kristian B R M Krogh; Christian Isak Jørgensen; Morten Tovborg; Annika Anthonsen; Theodora Tryfona; Clive P Walter; Paul Dupree; Feng Xu; Gideon J Davies; Paul H Walton
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-29       Impact factor: 11.205

10.  Mycobacterium tuberculosis uses host triacylglycerol to accumulate lipid droplets and acquires a dormancy-like phenotype in lipid-loaded macrophages.

Authors:  Jaiyanth Daniel; Hédia Maamar; Chirajyoti Deb; Tatiana D Sirakova; Pappachan E Kolattukudy
Journal:  PLoS Pathog       Date:  2011-06-23       Impact factor: 6.823

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  59 in total

Review 1.  Current and past strategies for bacterial culture in clinical microbiology.

Authors:  Jean-Christophe Lagier; Sophie Edouard; Isabelle Pagnier; Oleg Mediannikov; Michel Drancourt; Didier Raoult
Journal:  Clin Microbiol Rev       Date:  2015-01       Impact factor: 26.132

2.  Sequence, structure, and evolution of cellulases in glycoside hydrolase family 48.

Authors:  Leonid O Sukharnikov; Markus Alahuhta; Roman Brunecky; Amit Upadhyay; Michael E Himmel; Vladimir V Lunin; Igor B Zhulin
Journal:  J Biol Chem       Date:  2012-10-10       Impact factor: 5.157

3.  Characterization of cellulolytic activities of environmental bacterial consortia from an Argentinian native forest.

Authors:  Nelson Romano; Andrea Gioffré; Silvana M Sede; Eleonora Campos; Angel Cataldi; Paola Talia
Journal:  Curr Microbiol       Date:  2013-03-08       Impact factor: 2.188

4.  Integration of bacterial lytic polysaccharide monooxygenases into designer cellulosomes promotes enhanced cellulose degradation.

Authors:  Yonathan Arfi; Melina Shamshoum; Ilana Rogachev; Yoav Peleg; Edward A Bayer
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-09       Impact factor: 11.205

Review 5.  Function, distribution, and annotation of characterized cellulases, xylanases, and chitinases from CAZy.

Authors:  Stanley T C Nguyen; Hannah L Freund; Joshua Kasanjian; Renaud Berlemont
Journal:  Appl Microbiol Biotechnol       Date:  2018-01-22       Impact factor: 4.813

6.  Structural Basis for the Strict Substrate Selectivity of the Mycobacterial Hydrolase LipW.

Authors:  Magy G McKary; Jan Abendroth; Thomas E Edwards; R Jeremy Johnson
Journal:  Biochemistry       Date:  2016-12-12       Impact factor: 3.162

7.  Systems analysis in Cellvibrio japonicus resolves predicted redundancy of β-glucosidases and determines essential physiological functions.

Authors:  Cassandra E Nelson; Artur Rogowski; Carl Morland; Joshua A Wilhide; Harry J Gilbert; Jeffrey G Gardner
Journal:  Mol Microbiol       Date:  2017-02-28       Impact factor: 3.501

8.  Phylogenetic distribution of potential cellulases in bacteria.

Authors:  Renaud Berlemont; Adam C Martiny
Journal:  Appl Environ Microbiol       Date:  2012-12-21       Impact factor: 4.792

9.  Comprehensive functional characterization of the glycoside hydrolase family 3 enzymes from Cellvibrio japonicus reveals unique metabolic roles in biomass saccharification.

Authors:  Cassandra E Nelson; Mohamed A Attia; Artur Rogowski; Carl Morland; Harry Brumer; Jeffrey G Gardner
Journal:  Environ Microbiol       Date:  2017-12-07       Impact factor: 5.491

10.  NMR structure of a lytic polysaccharide monooxygenase provides insight into copper binding, protein dynamics, and substrate interactions.

Authors:  Finn L Aachmann; Morten Sørlie; Gudmund Skjåk-Bræk; Vincent G H Eijsink; Gustav Vaaje-Kolstad
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-29       Impact factor: 11.205

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